Wall clock time and date at job start Tue Mar 31 2020 04:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48501 * 109.46718 * 269.99330 * 3 2 1 5 5 H 1.48494 * 109.47384 * 29.99391 * 3 2 1 6 6 H 1.48498 * 109.47005 * 149.99884 * 3 2 1 7 7 C 1.38813 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00066 * 197.36539 * 7 2 1 9 9 N 1.36940 * 119.99725 * 17.36307 * 7 2 1 10 10 C 1.46921 * 120.63237 * 207.66195 * 9 7 2 11 11 C 1.53195 * 108.77950 * 233.63539 * 10 9 7 12 12 C 1.53034 * 109.31148 * 305.36448 * 11 10 9 13 13 H 1.09004 * 109.45104 * 301.35161 * 12 11 10 14 14 N 1.46498 * 109.46310 * 181.38217 * 12 11 10 15 15 C 1.34783 * 119.99947 * 84.93216 * 14 12 11 16 16 O 1.21598 * 119.99593 * 0.02562 * 15 14 12 17 17 C 1.47493 * 120.00289 * 180.02562 * 15 14 12 18 18 C 1.41200 * 126.36976 * 359.97438 * 17 15 14 19 19 C 1.37998 * 106.86362 * 180.02562 * 18 17 15 20 20 C 1.41387 * 131.98646 * 180.02562 * 19 18 17 21 21 C 1.35734 * 119.33555 * 179.97438 * 20 19 18 22 22 C 1.40834 * 119.72012 * 359.97438 * 21 20 19 23 23 C 1.34539 * 120.57872 * 0.26470 * 22 21 20 24 24 N 1.37435 * 120.74494 * 359.48133 * 23 22 21 25 25 C 1.35122 * 131.28566 * 180.19794 * 24 23 22 26 26 C 1.53042 * 109.53946 * 61.36666 * 12 11 10 27 27 H 1.08993 * 109.50275 * 178.65305 * 26 12 11 28 28 O 1.42904 * 109.50061 * 58.58134 * 26 12 11 29 29 C 1.46927 * 120.63161 * 27.69326 * 9 7 2 30 30 H 0.97003 * 119.99634 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.59125 * 353.42307 * 10 9 7 32 32 H 1.09003 * 109.59097 * 113.84398 * 10 9 7 33 33 H 1.09000 * 109.50041 * 185.41441 * 11 10 9 34 34 H 1.09000 * 109.49667 * 65.31556 * 11 10 9 35 35 H 0.96995 * 120.00483 * 264.93924 * 14 12 11 36 36 H 1.08002 * 126.56986 * 0.03749 * 18 17 15 37 37 H 1.08001 * 120.33318 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.14450 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.71176 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.62484 * 179.74567 * 23 22 21 41 41 H 1.07997 * 125.61771 * 0.32353 * 25 24 23 42 42 H 0.96696 * 114.00141 * 180.02562 * 28 26 12 43 43 H 1.09004 * 109.58308 * 6.57520 * 29 9 7 44 44 H 1.09004 * 109.70292 * 246.22292 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2797 9 7 1.3723 -2.3612 -0.3529 10 6 1.8194 -3.6547 0.1815 11 6 2.0751 -4.6098 -0.9887 12 6 0.8198 -4.6899 -1.8602 13 1 -0.0194 -5.0367 -1.2570 14 7 1.0494 -5.6279 -2.9619 15 6 0.8494 -6.9478 -2.7760 16 8 0.4778 -7.3599 -1.6939 17 6 1.0811 -7.8922 -3.8849 18 6 1.5101 -7.5631 -5.1892 19 6 1.5933 -8.7467 -5.8939 20 6 1.9653 -9.0287 -7.2285 21 6 1.9566 -10.3143 -7.6637 22 6 1.5791 -11.3469 -6.7836 23 6 1.2219 -11.0697 -5.5164 24 7 1.2280 -9.7763 -5.0517 25 6 0.9189 -9.2626 -3.8407 26 6 0.5016 -3.3048 -2.4280 27 1 -0.3786 -3.3672 -3.0678 28 8 1.6143 -2.8354 -3.1920 29 6 0.2281 -2.3349 -1.2741 30 1 -0.4850 0.8401 -0.0004 31 1 2.7400 -3.5173 0.7488 32 1 1.0471 -4.0692 0.8294 33 1 2.3145 -5.6011 -0.6036 34 1 2.9090 -4.2395 -1.5850 35 1 1.3455 -5.2992 -3.8250 36 1 1.7310 -6.5744 -5.5637 37 1 2.2542 -8.2293 -7.8947 38 1 2.2387 -10.5446 -8.6805 39 1 1.5718 -12.3697 -7.1301 40 1 0.9312 -11.8731 -4.8558 41 1 0.5983 -9.8304 -2.9799 42 1 1.4823 -1.9606 -3.5824 43 1 0.0986 -1.3265 -1.6673 44 1 -0.6756 -2.6403 -0.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090622453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:38 Heat of formation + Delta-G solvation = 16.477295 kcal Electronic energy + Delta-G solvation = -27612.843906 eV Core-core repulsion = 23724.872211 eV Total energy + Delta-G solvation = -3887.971695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42072 -39.53934 -37.86378 -36.57572 -34.74976 -34.22079 -33.36280 -32.02596 -30.42851 -29.19937 -28.94451 -27.99216 -25.40729 -24.13778 -22.88317 -22.18600 -21.99988 -21.43612 -19.76081 -19.20479 -17.95596 -17.32672 -16.91508 -16.48288 -15.86285 -15.70503 -15.42438 -15.36342 -14.91446 -14.67195 -14.37541 -14.10215 -13.80173 -13.72413 -13.43222 -13.15626 -12.72346 -12.63542 -12.25361 -12.03957 -11.94559 -11.92852 -11.57738 -11.22626 -11.08745 -10.79553 -10.73512 -10.53646 -10.42859 -10.14454 -10.00216 -9.78280 -9.56551 -9.13382 -8.84176 -8.56287 -8.43423 -7.65246 -6.65673 -5.78960 -3.19315 0.46698 1.09207 2.03274 2.37761 3.19833 3.37859 3.45622 3.47316 3.55437 3.66946 4.19112 4.45615 4.50202 4.50974 4.68015 4.77720 4.89076 5.05751 5.21873 5.25562 5.35487 5.45526 5.51593 5.52805 5.62078 5.63965 5.81283 5.98627 6.01862 6.03172 6.09702 6.27754 6.36429 6.47527 6.52891 6.60215 6.63427 6.84347 6.94218 6.98324 7.05054 7.21904 7.46892 7.80257 7.89732 8.28695 8.45750 8.54557 9.20617 9.83879 10.40871 11.29811 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.002391 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.313120 B =11707.891883 C =12188.210799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.164 3.836 13 H 0.091 0.909 14 N -0.710 5.710 15 C 0.581 3.419 16 O -0.549 6.549 17 C -0.164 4.164 18 C -0.161 4.161 19 C 0.024 3.976 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.138 4.138 23 C 0.043 3.957 24 N -0.343 5.343 25 C 0.017 3.983 26 C 0.073 3.927 27 H 0.043 0.957 28 O -0.560 6.560 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.182 0.818 42 H 0.374 0.626 43 H 0.096 0.904 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 -20.307 -16.461 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.060 3.940 13 H 0.108 0.892 14 N -0.359 5.359 15 C 0.368 3.632 16 O -0.429 6.429 17 C -0.171 4.171 18 C -0.185 4.185 19 C -0.080 4.080 20 C -0.092 4.092 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.076 4.076 24 N -0.007 5.007 25 C -0.117 4.117 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.365 6.365 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.199 0.801 42 H 0.221 0.779 43 H 0.114 0.886 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.571 -21.259 -15.452 26.328 hybrid contribution 0.257 1.479 -0.627 1.627 sum 1.828 -19.780 -16.079 25.556 Atomic orbital electron populations 1.70027 1.05187 1.25443 1.54620 1.25017 0.95298 0.98364 1.01338 0.86263 0.79109 0.83635 0.77628 1.21530 1.21911 1.20491 1.19200 0.92723 0.84740 1.40364 0.91644 1.43883 1.35412 1.01621 1.49609 1.20902 0.97849 0.86390 0.92750 1.22302 0.97604 0.99313 0.98417 1.21006 0.99266 0.86389 0.87350 0.89150 1.45994 1.68112 1.05843 1.16000 1.17417 0.77189 0.82067 0.86504 1.90766 1.47597 1.78218 1.26287 1.19679 1.09479 0.92944 0.95018 1.21248 1.07661 0.96818 0.92804 1.18800 1.09384 0.87686 0.92082 1.20681 0.98453 0.97736 0.92362 1.20928 1.02202 0.92320 1.00335 1.20720 1.01933 1.00744 0.92405 1.21681 1.03914 0.84718 0.97252 1.41325 1.42992 1.06059 1.10299 1.22025 1.08373 0.93552 0.87713 1.22840 0.87660 0.94020 0.94289 0.93870 1.86349 1.41917 1.38155 1.70056 1.21439 0.89661 0.98485 0.88617 0.93680 0.92472 0.96215 0.92844 0.91213 0.76347 0.82949 0.83926 0.84924 0.83772 0.82129 0.80138 0.77888 0.88633 0.95444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.82 11.19 55.49 0.62 -25.20 16 2 C 0.00 -0.07 4.91 -17.43 -0.09 -0.15 16 3 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.54 9.59 -15.06 -0.14 -6.69 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.58 -14.52 2.94 -172.31 -0.51 -15.02 16 10 C 0.15 3.27 6.52 -3.71 -0.02 3.24 16 11 C -0.14 -2.67 5.51 -26.61 -0.15 -2.81 16 12 C 0.16 3.01 2.20 -67.89 -0.15 2.86 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 N -0.71 -11.29 5.04 -54.82 -0.28 -11.57 16 15 C 0.58 9.61 7.78 -12.49 -0.10 9.51 16 16 O -0.55 -10.82 16.56 5.28 0.09 -10.74 16 17 C -0.16 -2.25 6.12 -105.07 -0.64 -2.89 16 18 C -0.16 -1.89 10.44 -38.55 -0.40 -2.29 16 19 C 0.02 0.26 6.70 -84.00 -0.56 -0.30 16 20 C -0.07 -0.60 10.11 -39.28 -0.40 -1.00 16 21 C -0.14 -0.91 10.07 -39.50 -0.40 -1.31 16 22 C -0.14 -0.84 9.97 -39.91 -0.40 -1.24 16 23 C 0.04 0.32 10.89 -16.35 -0.18 0.14 16 24 N -0.34 -3.60 2.92 -60.42 -0.18 -3.78 16 25 C 0.02 0.20 11.37 -16.17 -0.18 0.02 16 26 C 0.07 1.35 3.38 -26.61 -0.09 1.26 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 O -0.56 -9.99 12.09 -35.23 -0.43 -10.41 16 29 C 0.15 3.33 4.95 -3.71 -0.02 3.32 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.43 7.61 -51.93 -0.40 1.04 16 35 H 0.40 5.66 7.23 -40.82 -0.29 5.36 16 36 H 0.15 1.50 7.53 -52.49 -0.40 1.10 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.37 5.80 9.08 45.56 0.41 6.21 16 43 H 0.10 2.39 6.03 -51.93 -0.31 2.08 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -33.46 364.19 -9.28 -42.75 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.14 Total: 10.32 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.92 Total: 1.67 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.34 Total: -55.56 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.34 Total: -21.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.46 -9.28 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090622453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.222 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds