Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30900 * 119.96379 * 2 1 4 4 C 1.34153 * 121.16866 * 179.97438 * 3 2 1 5 5 C 1.38702 * 132.25283 * 180.02562 * 4 3 2 6 6 C 1.38839 * 107.67661 * 179.97438 * 5 4 3 7 7 N 1.31290 * 108.99026 * 359.97438 * 6 5 4 8 8 N 1.37265 * 120.89877 * 0.02562 * 4 3 2 9 9 C 1.36082 * 119.97616 * 359.73919 * 8 4 3 10 10 C 1.38060 * 118.88662 * 0.53260 * 9 8 4 11 11 C 1.47599 * 120.50427 * 179.72886 * 10 9 8 12 12 O 1.21584 * 120.00648 * 173.83562 * 11 10 9 13 13 N 1.34782 * 119.99734 * 353.83346 * 11 10 9 14 14 C 1.46502 * 120.00213 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 180.02562 * 14 13 11 16 16 C 1.53786 * 113.61635 * 274.13681 * 15 14 13 17 17 C 1.53950 * 87.02121 * 220.04862 * 16 15 14 18 18 N 1.46497 * 113.53792 * 270.81130 * 17 16 15 19 19 C 1.36936 * 120.00061 * 252.49615 * 18 17 16 20 20 H 1.08003 * 119.99766 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47382 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47132 * 120.00013 * 23 21 19 26 26 H 1.48499 * 109.47346 * 240.00142 * 23 21 19 27 27 C 1.53784 * 113.61393 * 176.52780 * 15 14 13 28 28 H 1.08996 * 109.47713 * 263.53362 * 1 2 3 29 29 H 1.09005 * 109.47020 * 23.53152 * 1 2 3 30 30 H 1.09002 * 109.47204 * 143.52724 * 1 2 3 31 31 H 1.07997 * 126.16148 * 359.94011 * 5 4 3 32 32 H 1.08004 * 125.50476 * 180.02562 * 6 5 4 33 33 H 1.07997 * 120.55393 * 180.28372 * 9 8 4 34 34 H 0.96997 * 119.99960 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.46656 * 300.00091 * 14 13 11 36 36 H 1.08997 * 109.46867 * 59.99628 * 14 13 11 37 37 H 1.09002 * 112.84931 * 45.33448 * 15 14 13 38 38 H 1.08998 * 113.60965 * 334.56651 * 16 15 14 39 39 H 1.09001 * 113.61519 * 105.46810 * 16 15 14 40 40 H 1.09002 * 113.74410 * 139.94224 * 17 16 15 41 41 H 0.97006 * 120.00200 * 72.49055 * 18 17 16 42 42 H 0.97004 * 120.00133 * 179.97438 * 22 21 19 43 43 H 1.08998 * 113.61428 * 254.52791 * 27 15 14 44 44 H 1.08996 * 113.61595 * 25.44024 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1623 0.0005 5 6 4.4129 2.2083 0.0011 6 6 5.6873 1.6575 0.0020 7 7 5.5870 0.3485 0.0026 8 7 4.2315 -0.0005 0.0005 9 6 3.5943 -1.2029 0.0054 10 6 2.2139 -1.2262 -0.0010 11 6 1.4863 -2.5104 -0.0021 12 8 0.2753 -2.5232 0.1054 13 7 2.1644 -3.6690 -0.1222 14 6 1.4422 -4.9437 -0.1238 15 6 2.4394 -6.0946 -0.2713 16 6 2.7937 -6.4194 -1.7321 17 6 2.7444 -7.9046 -1.3296 18 7 4.0278 -8.4240 -0.8508 19 6 4.7536 -9.2824 -1.6327 20 1 4.3797 -9.5769 -2.6022 21 6 5.9700 -9.7741 -1.1793 22 7 6.4254 -9.4157 0.0025 23 14 6.9598 -10.9457 -2.2456 24 1 6.2341 -11.1900 -3.5180 25 1 8.2862 -10.3463 -2.5400 26 1 7.1462 -12.2317 -1.5268 27 6 1.7889 -7.4863 -0.1995 28 1 -0.3634 -0.1157 1.0211 29 1 -0.3633 0.9423 -0.4103 30 1 -0.3634 -0.8264 -0.6109 31 1 4.1738 3.2615 0.0003 32 1 6.6119 2.2158 0.0031 33 1 4.1590 -2.1235 0.0100 34 1 3.1306 -3.6589 -0.2076 35 1 0.8971 -5.0536 0.8137 36 1 0.7397 -4.9621 -0.9569 37 1 3.3101 -5.9858 0.3754 38 1 2.0186 -6.1338 -2.4432 39 1 3.7863 -6.0787 -2.0267 40 1 2.2805 -8.5470 -2.0781 41 1 4.3635 -8.1597 0.0201 42 1 7.2752 -9.7595 0.3195 43 1 1.9715 -8.0056 0.7413 44 1 0.7386 -7.4929 -0.4909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091305305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = 97.656920 kcal Electronic energy + Delta-G solvation = -26814.673840 eV Core-core repulsion = 22962.515109 eV Total energy + Delta-G solvation = -3852.158731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.50753 -41.19733 -40.01964 -38.86639 -36.26228 -35.51196 -34.83188 -33.17563 -32.13575 -30.94856 -29.18230 -28.47373 -26.41224 -26.00941 -25.50516 -23.90179 -23.03975 -22.52596 -22.04460 -20.01496 -19.69323 -19.38720 -18.84537 -17.54652 -17.40312 -16.93468 -16.63821 -16.40779 -16.38406 -15.80207 -15.72499 -15.20468 -15.11687 -14.92409 -14.66618 -14.54270 -14.35093 -13.95251 -13.75769 -13.29656 -13.15188 -12.94987 -12.91470 -12.84735 -12.66326 -12.46694 -12.41817 -12.12962 -12.04633 -11.54028 -11.47156 -11.28937 -10.97003 -10.87708 -10.70923 -10.66560 -10.10092 -9.10537 -8.99121 -7.96180 -5.23689 -0.86701 -0.52458 0.80157 1.31393 1.47261 1.47915 1.57497 1.75865 1.91401 2.30858 2.55166 2.64808 2.92034 2.99145 3.37028 3.49148 3.72051 3.75452 3.80771 3.89893 4.06153 4.08630 4.17357 4.29261 4.35622 4.43202 4.60606 4.71705 4.75674 4.76651 4.80874 4.88521 4.96801 5.03055 5.08517 5.13621 5.21937 5.35465 5.38571 5.40457 5.47657 5.55601 5.68893 6.21962 6.28200 6.32204 6.47060 7.00065 7.33334 8.11456 8.32728 9.27210 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.002463 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.346314 B =11366.420359 C =13098.549584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.249 3.751 3 N -0.490 5.490 4 C 0.238 3.762 5 C -0.266 4.266 6 C 0.110 3.890 7 N -0.339 5.339 8 N -0.332 5.332 9 C 0.219 3.781 10 C -0.242 4.242 11 C 0.582 3.418 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.141 3.859 15 C -0.104 4.104 16 C -0.155 4.155 17 C 0.141 3.859 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.133 4.133 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.243 0.757 33 H 0.206 0.794 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 22.543 0.252 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 N -0.203 5.203 4 C 0.014 3.986 5 C -0.296 4.296 6 C -0.069 4.069 7 N -0.161 5.161 8 N -0.102 5.102 9 C 0.081 3.919 10 C -0.252 4.252 11 C 0.368 3.632 12 O -0.422 6.422 13 N -0.363 5.363 14 C 0.019 3.981 15 C -0.123 4.123 16 C -0.195 4.195 17 C 0.031 3.969 18 N -0.358 5.358 19 C -0.371 4.371 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.172 4.172 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.202 0.798 32 H 0.259 0.741 33 H 0.223 0.777 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.003 22.247 0.163 24.393 hybrid contribution 1.643 -0.708 -0.025 1.790 sum -8.360 21.539 0.138 23.105 Atomic orbital electron populations 1.21107 0.84680 1.05011 1.05257 1.22308 0.99022 0.85527 0.84752 1.68129 1.03927 1.28534 1.19694 1.21344 0.88677 0.87910 1.00690 1.21480 0.89540 0.99552 1.19067 1.24714 1.00378 0.90123 0.91671 1.77970 0.88891 1.17283 1.31989 1.47302 1.08050 1.06373 1.48481 1.22913 0.91992 0.89442 0.87588 1.20526 0.91759 0.96787 1.16168 1.17315 0.86628 0.82590 0.76669 1.90761 1.13656 1.86860 1.50958 1.45927 1.11450 1.05682 1.73284 1.21414 0.93983 0.79977 1.02751 1.22514 0.98206 0.93797 0.97801 1.23755 1.00848 0.99070 0.95843 1.21456 0.86297 0.93252 0.95930 1.42315 1.19902 1.53833 1.19793 1.19691 0.99955 1.18265 0.99146 0.90610 1.25513 0.99598 1.03225 0.98431 1.69805 1.21700 1.50078 1.20348 0.85130 0.78382 0.78238 0.78367 1.19060 1.22235 1.22202 1.23336 0.99911 0.94740 0.99209 0.88387 0.89410 0.87685 0.79759 0.74124 0.77690 0.75665 0.90812 0.90336 0.90036 0.88783 0.93481 0.92348 0.79343 0.94078 0.92441 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 8.93 71.24 0.64 -1.14 16 2 C 0.25 5.23 6.87 43.51 0.30 5.52 16 3 N -0.49 -11.41 10.37 -179.76 -1.86 -13.27 16 4 C 0.24 5.49 7.91 133.01 1.05 6.55 16 5 C -0.27 -4.73 10.91 22.52 0.25 -4.48 16 6 C 0.11 1.72 11.95 84.92 1.01 2.73 16 7 N -0.34 -7.47 12.65 -57.45 -0.73 -8.20 16 8 N -0.33 -7.49 3.88 -190.86 -0.74 -8.23 16 9 C 0.22 4.11 10.82 83.99 0.91 5.02 16 10 C -0.24 -4.76 5.88 -20.03 -0.12 -4.88 16 11 C 0.58 11.91 7.71 86.71 0.67 12.58 16 12 O -0.54 -13.30 13.44 -3.98 -0.05 -13.35 16 13 N -0.71 -13.03 5.51 -466.21 -2.57 -15.59 16 14 C 0.14 2.82 5.50 86.38 0.47 3.29 16 15 C -0.10 -2.57 3.62 -10.27 -0.04 -2.61 16 16 C -0.15 -4.43 7.44 31.18 0.23 -4.20 16 17 C 0.14 5.01 4.57 45.58 0.21 5.22 16 18 N -0.72 -34.25 5.31 -320.16 -1.70 -35.95 16 19 C -0.24 -12.79 9.97 84.03 0.84 -11.96 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 23 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C -0.13 -3.63 7.39 31.12 0.23 -3.40 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.10 1.95 5.90 -2.39 -0.01 1.94 16 31 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.24 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.21 2.70 6.49 -2.91 -0.02 2.68 16 34 H 0.41 6.25 6.58 -92.71 -0.61 5.64 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.53 7.88 -2.39 -0.02 1.51 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 41 H 0.37 19.09 7.90 -92.70 -0.73 18.35 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -71.12 370.03 1.49 -69.63 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.29 Total: 30.70 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 7.12 Total: 4.50 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -7.32 Total: -138.70 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.05 Total: -13.35 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.12 1.49 -69.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091305305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.284 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds