Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33722 * 126.12423 * 2 1 4 4 H 0.96994 * 124.97142 * 0.02562 * 3 2 1 5 5 N 1.39884 * 110.05146 * 180.02562 * 3 2 1 6 6 C 1.31908 * 109.18116 * 359.97438 * 5 3 2 7 7 N 1.34416 * 134.12906 * 180.02562 * 6 5 3 8 8 C 1.30504 * 121.56262 * 179.68223 * 7 6 5 9 9 C 1.40813 * 122.37144 * 0.59645 * 8 7 6 10 10 C 1.47519 * 119.91746 * 179.70856 * 9 8 7 11 11 O 1.21594 * 120.00515 * 179.72474 * 10 9 8 12 12 N 1.34780 * 119.99736 * 359.72493 * 10 9 8 13 13 C 1.46502 * 119.99751 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46813 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61327 * 174.99822 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98497 * 15 14 13 17 17 N 1.46506 * 113.61361 * 89.11956 * 16 15 14 18 18 C 1.36932 * 119.99948 * 156.53166 * 17 16 15 19 19 H 1.08003 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99865 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00043 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47266 * 89.99689 * 22 20 18 24 24 H 1.48502 * 109.46703 * 209.99822 * 22 20 18 25 25 H 1.48500 * 109.46754 * 329.99754 * 22 20 18 26 26 C 1.53773 * 87.17302 * 334.52628 * 16 15 14 27 27 C 1.38873 * 120.16797 * 359.43296 * 9 8 7 28 28 C 1.38541 * 126.12546 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46988 * 269.99693 * 1 2 3 30 30 H 1.08998 * 109.47052 * 29.99927 * 1 2 3 31 31 H 1.09003 * 109.47095 * 149.99970 * 1 2 3 32 32 H 1.08000 * 118.81285 * 180.28061 * 8 7 6 33 33 H 0.97002 * 120.00271 * 359.97438 * 12 10 9 34 34 H 1.09005 * 109.47329 * 60.00307 * 13 12 10 35 35 H 1.08995 * 109.47088 * 299.99471 * 13 12 10 36 36 H 1.09005 * 112.84988 * 43.80903 * 14 13 12 37 37 H 1.09001 * 113.61537 * 25.43951 * 15 14 13 38 38 H 1.08998 * 113.61680 * 254.53105 * 15 14 13 39 39 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 40 40 H 0.96997 * 119.99707 * 336.52824 * 17 16 15 41 41 H 0.97001 * 119.99982 * 180.02562 * 21 20 18 42 42 H 1.09007 * 113.61678 * 140.01927 * 26 16 15 43 43 H 1.09000 * 113.61916 * 270.92600 * 26 16 15 44 44 H 1.07995 * 121.04844 * 180.23633 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2953 1.0801 0.0000 4 1 1.9810 1.9978 0.0004 5 7 3.6395 0.6928 -0.0006 6 6 3.7110 -0.6243 -0.0004 7 7 4.7251 -1.5065 -0.0003 8 6 4.5107 -2.7938 0.0060 9 6 3.2137 -3.3421 0.0008 10 6 3.0338 -4.8063 0.0020 11 8 1.9146 -5.2814 0.0025 12 7 4.1103 -5.6174 0.0024 13 6 3.9317 -7.0715 0.0030 14 6 5.3013 -7.7534 0.0028 15 6 5.2271 -9.2845 0.1262 16 6 6.3661 -9.3442 -0.9053 17 7 7.7027 -9.3100 -0.3062 18 6 8.7727 -9.8227 -0.9898 19 1 8.6313 -10.2526 -1.9704 20 6 10.0391 -9.7898 -0.4224 21 7 11.0675 -10.2830 -1.0793 22 14 10.2836 -9.0467 1.2740 23 1 10.1203 -10.1027 2.3051 24 1 11.6482 -8.4687 1.3691 25 1 9.2766 -7.9781 1.4960 26 6 5.8808 -7.9742 -1.4074 27 6 2.1034 -2.5079 0.0003 28 6 2.3237 -1.1190 0.0005 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 5.3586 -3.4627 0.0104 33 1 5.0032 -5.2384 0.0016 34 1 3.3775 -7.3699 -0.8870 35 1 3.3774 -7.3691 0.8930 36 1 6.0035 -7.2930 0.6978 37 1 4.2890 -9.7067 -0.2344 38 1 5.5096 -9.6574 1.1107 39 1 6.2508 -10.1435 -1.6374 40 1 7.8296 -8.9241 0.5746 41 1 11.9524 -10.2603 -0.6827 42 1 6.6907 -7.2898 -1.6601 43 1 5.1212 -8.0386 -2.1864 44 1 1.1023 -2.9131 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091366699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = 103.742765 kcal Electronic energy + Delta-G solvation = -26428.707351 eV Core-core repulsion = 22576.812522 eV Total energy + Delta-G solvation = -3851.894829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10119 -40.10216 -38.79471 -37.96727 -34.85000 -33.94981 -33.26164 -32.02936 -31.48145 -30.60126 -28.42812 -27.20300 -25.24317 -25.16384 -23.99568 -23.17101 -21.73317 -21.09915 -20.51141 -18.82119 -18.50813 -18.00334 -17.62456 -17.27956 -16.35606 -16.09862 -15.53752 -15.32446 -15.07730 -14.78093 -14.40376 -14.00931 -13.92597 -13.87981 -13.58075 -13.52109 -13.38916 -13.05595 -12.85472 -12.72022 -12.48278 -12.03955 -11.63523 -11.57332 -11.34753 -11.03731 -10.90543 -10.51422 -10.43693 -10.18595 -10.00327 -9.66972 -9.61713 -9.56534 -9.47916 -9.11808 -8.90533 -8.46843 -7.29908 -5.79254 -3.15503 -0.15986 0.81262 1.71540 1.90101 2.77046 3.00568 3.35767 3.38619 3.42064 3.44760 3.57933 3.65958 4.09199 4.30544 4.40429 4.56664 4.59902 4.65283 4.72560 4.81352 4.92712 4.96432 5.05010 5.09108 5.17429 5.39984 5.43138 5.51409 5.63395 5.65154 5.76401 5.86542 5.92314 5.97673 6.12981 6.23365 6.30933 6.36375 6.49269 6.63748 6.74101 6.88183 6.90138 7.39213 7.57436 7.98628 8.08198 8.40400 9.18272 9.90468 10.09584 11.38818 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.002220 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.352973 B =12607.203257 C =13708.312286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.154 3.846 3 N -0.409 5.409 4 H 0.448 0.552 5 N -0.290 5.290 6 C 0.285 3.715 7 N -0.473 5.473 8 C 0.224 3.776 9 C -0.243 4.243 10 C 0.569 3.431 11 O -0.547 6.547 12 N -0.720 5.720 13 C 0.132 3.868 14 C -0.125 4.125 15 C -0.147 4.147 16 C 0.172 3.828 17 N -0.730 5.730 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.167 4.167 27 C 0.089 3.911 28 C -0.274 4.274 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.427 21.739 3.327 33.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 N -0.110 5.110 4 H 0.294 0.706 5 N -0.120 5.120 6 C 0.022 3.978 7 N -0.185 5.185 8 C 0.037 3.963 9 C -0.251 4.251 10 C 0.356 3.644 11 O -0.426 6.426 12 N -0.371 5.371 13 C 0.009 3.991 14 C -0.144 4.144 15 C -0.187 4.187 16 C 0.060 3.940 17 N -0.370 5.370 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.208 4.208 27 C 0.061 3.939 28 C -0.286 4.286 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.185 0.815 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.472 22.910 3.150 33.670 hybrid contribution -0.547 0.309 1.229 1.381 sum -25.020 23.219 4.379 34.413 Atomic orbital electron populations 1.20716 0.85378 1.05334 1.04745 1.21458 0.94748 0.87132 0.95558 1.46446 1.04576 1.09046 1.50926 0.70585 1.77811 0.91711 1.10363 1.32110 1.21428 0.88644 0.91490 0.96198 1.67374 1.31503 1.01758 1.17865 1.23082 0.95410 0.90478 0.87326 1.20511 0.94972 0.94359 1.15242 1.17823 0.84747 0.85533 0.76300 1.90768 1.24043 1.76874 1.50878 1.45973 1.08874 1.07526 1.74740 1.21501 0.97672 0.77835 1.02076 1.22822 0.94996 0.96564 0.99970 1.23436 1.00222 0.93821 1.01224 1.21005 0.84333 0.94808 0.93833 1.42512 1.03205 1.72218 1.19093 1.19102 0.85505 1.31824 1.01180 0.89046 1.24689 0.95543 1.00805 0.98055 1.69699 0.99248 1.50919 1.38057 0.86556 0.77157 0.79192 0.85628 1.21066 1.21696 1.20305 1.23909 1.00198 1.02249 0.94414 1.21095 0.99447 0.89210 0.84179 1.20055 0.94835 0.94297 1.19425 0.88604 0.89799 0.88375 0.81523 0.76341 0.91172 0.91562 0.89098 0.89951 0.91426 0.91177 0.80511 0.92993 0.91202 0.90911 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 10.45 36.00 0.38 0.23 16 2 C 0.15 0.91 7.28 -81.66 -0.59 0.31 16 3 N -0.41 -2.58 7.16 33.86 0.24 -2.33 16 4 H 0.45 0.92 8.96 -182.77 -1.64 -0.71 16 5 N -0.29 -3.35 12.68 31.98 0.41 -2.94 16 6 C 0.29 3.57 8.60 -156.39 -1.35 2.22 16 7 N -0.47 -6.19 10.42 -11.02 -0.11 -6.30 16 8 C 0.22 2.37 10.64 -17.14 -0.18 2.19 16 9 C -0.24 -2.58 5.88 -104.91 -0.62 -3.20 16 10 C 0.57 6.86 7.76 -12.48 -0.10 6.76 16 11 O -0.55 -8.14 16.34 5.28 0.09 -8.05 16 12 N -0.72 -7.86 5.51 -61.35 -0.34 -8.19 16 13 C 0.13 1.56 5.51 -4.04 -0.02 1.53 16 14 C -0.12 -1.64 3.65 -89.67 -0.33 -1.97 16 15 C -0.15 -2.10 7.38 -25.92 -0.19 -2.29 16 16 C 0.17 3.10 4.55 -67.12 -0.31 2.80 16 17 N -0.73 -16.55 5.11 -52.64 -0.27 -16.82 16 18 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 22 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 26 C -0.17 -2.53 7.45 -25.78 -0.19 -2.72 16 27 C 0.09 0.85 9.75 -38.45 -0.37 0.47 16 28 C -0.27 -2.60 6.26 -105.21 -0.66 -3.26 16 29 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.17 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.40 3.67 6.44 -40.82 -0.26 3.41 16 34 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 40 H 0.36 8.03 5.76 -40.82 -0.24 7.80 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 44 H 0.15 1.16 7.67 -52.49 -0.40 0.76 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -37.49 371.23 -10.20 -47.68 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.08 Total: 6.37 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -4.78 Total: -3.82 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: 0.70 Total: -64.77 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.49 -10.20 -47.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091366699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.426 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds