Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30696 * 125.63867 * 2 1 4 4 N 1.39912 * 109.51726 * 179.97438 * 3 2 1 5 5 C 1.36321 * 132.16360 * 180.02562 * 4 3 2 6 6 C 1.35754 * 119.15459 * 179.97438 * 5 4 3 7 7 C 1.39960 * 119.35807 * 0.28380 * 6 5 4 8 8 N 1.31503 * 120.10307 * 359.41640 * 7 6 5 9 9 C 1.33379 * 120.85622 * 0.59257 * 8 7 6 10 10 C 1.40651 * 125.63388 * 179.97438 * 2 1 3 11 11 C 1.46579 * 126.53638 * 0.07249 * 10 2 1 12 12 O 1.21709 * 120.00286 * 89.97518 * 11 10 2 13 13 N 1.34782 * 119.99854 * 269.97352 * 11 10 2 14 14 C 1.46508 * 119.99881 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47203 * 179.97438 * 14 13 11 16 16 C 1.53782 * 113.61222 * 274.13708 * 15 14 13 17 17 C 1.53953 * 87.01723 * 220.04645 * 16 15 14 18 18 N 1.46506 * 113.53838 * 270.81078 * 17 16 15 19 19 C 1.36938 * 119.99856 * 252.49617 * 18 17 16 20 20 H 1.07996 * 120.00433 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99662 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00060 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00340 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47420 * 90.00159 * 23 21 19 25 25 H 1.48498 * 109.47359 * 210.00318 * 23 21 19 26 26 H 1.48503 * 109.46875 * 330.00156 * 23 21 19 27 27 C 1.53779 * 113.61638 * 176.52538 * 15 14 13 28 28 H 1.08997 * 109.46876 * 90.02617 * 1 2 3 29 29 H 1.09003 * 109.47228 * 210.02822 * 1 2 3 30 30 H 1.08998 * 109.46556 * 330.02803 * 1 2 3 31 31 H 1.08002 * 120.41918 * 359.95430 * 5 4 3 32 32 H 1.08002 * 120.31693 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.94751 * 179.69763 * 7 6 5 34 34 H 0.97000 * 120.00132 * 359.97438 * 13 11 10 35 35 H 1.09004 * 109.46636 * 299.99987 * 14 13 11 36 36 H 1.09002 * 109.47020 * 59.99437 * 14 13 11 37 37 H 1.09003 * 112.85362 * 45.33003 * 15 14 13 38 38 H 1.08998 * 113.61591 * 334.56286 * 16 15 14 39 39 H 1.08995 * 113.61719 * 105.47124 * 16 15 14 40 40 H 1.09006 * 113.74488 * 139.94526 * 17 16 15 41 41 H 0.96995 * 119.99945 * 72.49559 * 18 17 16 42 42 H 0.96998 * 120.00657 * 180.02562 * 22 21 19 43 43 H 1.08992 * 113.61818 * 254.52875 * 27 15 14 44 44 H 1.09002 * 113.61377 * 25.43736 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0622 0.0000 4 7 3.6126 0.6737 0.0006 5 6 4.7723 1.3903 0.0013 6 6 5.9581 0.7295 0.0023 7 6 5.9637 -0.6701 -0.0035 8 7 4.8287 -1.3342 0.0018 9 6 3.6600 -0.6915 0.0008 10 6 2.3265 -1.1432 0.0005 11 6 1.8776 -2.5385 -0.0004 12 8 1.6919 -3.1175 -1.0547 13 7 1.6706 -3.1806 1.1665 14 6 1.2226 -4.5754 1.1656 15 6 1.0661 -5.0617 2.6078 16 6 2.3704 -5.5961 3.2226 17 6 1.5183 -6.7050 3.8662 18 7 0.9869 -6.3447 5.1831 19 6 1.5052 -6.9214 6.3118 20 1 2.3053 -7.6422 6.2312 21 6 1.0020 -6.5796 7.5595 22 7 1.5005 -7.1335 8.6445 23 14 -0.3815 -5.3323 7.6990 24 1 -1.6887 -6.0343 7.6397 25 1 -0.2668 -4.6081 8.9904 26 1 -0.2888 -4.3629 6.5779 27 6 0.5164 -6.4936 2.7189 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3632 0.8902 0.5134 31 1 4.7479 2.4701 0.0007 32 1 6.8882 1.2785 0.0024 33 1 6.9016 -1.2055 -0.0077 34 1 1.8190 -2.7193 2.0068 35 1 0.2645 -4.6489 0.6510 36 1 1.9592 -5.1933 0.6521 37 1 0.5462 -4.3441 3.2425 38 1 3.0820 -5.9654 2.4842 39 1 2.8228 -4.9170 3.9452 40 1 1.9937 -7.6859 3.8557 41 1 0.2680 -5.6976 5.2555 42 1 1.1487 -6.8950 9.5163 43 1 -0.5256 -6.5380 3.0353 44 1 0.7203 -7.1088 1.8424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091369896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = 118.041659 kcal Electronic energy + Delta-G solvation = -27050.404789 eV Core-core repulsion = 23199.130006 eV Total energy + Delta-G solvation = -3851.274782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83292 -39.67490 -38.75651 -38.22247 -34.63005 -34.60088 -33.17512 -32.57479 -30.77006 -30.06937 -28.82029 -27.38972 -25.14321 -24.99907 -24.25539 -23.25088 -21.84237 -21.45669 -20.33237 -18.85799 -18.39464 -17.84754 -17.65837 -17.25014 -16.69251 -16.04367 -15.88104 -15.18379 -14.98085 -14.60880 -14.36639 -14.00706 -13.94263 -13.67493 -13.59214 -13.47530 -13.16087 -12.83779 -12.71883 -12.69522 -12.43476 -12.01422 -11.69722 -11.55921 -11.49204 -11.33462 -10.91218 -10.48192 -10.31824 -10.27456 -10.14959 -9.87555 -9.86043 -9.65284 -9.50676 -8.96713 -8.89367 -8.34124 -7.30086 -5.80172 -3.16084 -0.00106 0.36531 1.50566 1.98700 2.54675 2.89326 3.29236 3.34149 3.35495 3.37128 3.42595 3.68669 3.87643 4.33523 4.45656 4.55549 4.65335 4.80852 4.93248 4.98729 5.01611 5.06762 5.17752 5.21078 5.22419 5.40463 5.44287 5.49055 5.50677 5.56947 5.78725 5.85817 5.91603 5.97449 6.07498 6.17009 6.26627 6.42944 6.53495 6.66081 6.78252 6.92401 6.95180 7.14621 7.56321 7.98247 8.26893 8.39705 9.17655 9.89938 10.09415 11.38045 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.002640 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.376371 B =10605.425622 C =10854.354884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.159 3.841 3 N -0.311 5.311 4 N -0.306 5.306 5 C 0.168 3.832 6 C -0.226 4.226 7 C 0.188 3.812 8 N -0.460 5.460 9 C 0.298 3.702 10 C -0.280 4.280 11 C 0.608 3.392 12 O -0.538 6.538 13 N -0.714 5.714 14 C 0.131 3.869 15 C -0.123 4.123 16 C -0.166 4.166 17 C 0.172 3.828 18 N -0.730 5.730 19 C -0.245 4.245 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.183 0.817 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 19.388 -20.307 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.002 4.002 3 N -0.136 5.136 4 N -0.074 5.074 5 C 0.032 3.968 6 C -0.250 4.250 7 C 0.005 3.995 8 N -0.171 5.171 9 C 0.068 3.932 10 C -0.296 4.296 11 C 0.392 3.608 12 O -0.414 6.414 13 N -0.364 5.364 14 C 0.008 3.992 15 C -0.142 4.142 16 C -0.207 4.207 17 C 0.061 3.939 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.187 4.187 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.200 0.800 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.962 19.140 -20.849 28.924 hybrid contribution -0.568 1.392 0.660 1.642 sum 5.395 20.532 -20.189 29.296 Atomic orbital electron populations 1.20408 0.84764 1.04459 1.04327 1.22416 0.97317 0.88280 0.92182 1.77542 0.82354 1.21194 1.32471 1.46856 1.06705 1.07117 1.46732 1.22151 0.81637 0.99656 0.93334 1.21908 0.98223 0.96359 1.08475 1.23565 0.96589 0.91612 0.87717 1.68190 0.96150 1.37333 1.15403 1.20313 0.93743 0.80570 0.98535 1.19274 0.88857 0.95077 1.26399 1.16747 0.76454 0.83845 0.83770 1.90797 1.51532 1.67658 1.31426 1.46045 1.68189 1.13952 1.08249 1.21487 0.99652 0.80758 0.97269 1.22749 0.99948 0.97412 0.94098 1.23873 0.95674 1.01245 0.99892 1.21052 0.92639 0.96015 0.84235 1.42522 1.42466 1.50557 1.01496 1.19120 1.15580 1.19327 0.83469 0.89019 1.24679 0.99394 0.99731 0.95304 1.69697 1.44624 1.46363 0.97337 0.86560 0.83177 0.81903 0.76934 1.20987 1.21710 1.20401 1.23449 1.00369 0.94800 1.00110 0.89064 0.89486 0.89613 0.79987 0.81078 0.79808 0.76457 0.91660 0.91310 0.89291 0.90882 0.91458 0.91057 0.80538 0.93004 0.91426 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.26 36.01 0.37 -0.33 16 2 C 0.16 1.89 7.22 -82.16 -0.59 1.30 16 3 N -0.31 -3.71 12.58 33.80 0.43 -3.29 16 4 N -0.31 -3.32 3.86 -11.97 -0.05 -3.37 16 5 C 0.17 1.04 11.29 -16.45 -0.19 0.85 16 6 C -0.23 -0.93 10.05 -39.83 -0.40 -1.33 16 7 C 0.19 1.25 11.28 -17.05 -0.19 1.05 16 8 N -0.46 -5.42 10.47 -12.00 -0.13 -5.55 16 9 C 0.30 3.87 7.90 -155.84 -1.23 2.64 16 10 C -0.28 -3.86 5.91 -104.66 -0.62 -4.48 16 11 C 0.61 9.20 7.28 -12.89 -0.09 9.11 16 12 O -0.54 -9.92 17.11 5.18 0.09 -9.83 16 13 N -0.71 -9.56 5.55 -61.64 -0.34 -9.90 16 14 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 15 C -0.12 -1.77 3.62 -89.81 -0.33 -2.10 16 16 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 17 C 0.17 3.24 4.57 -67.02 -0.31 2.93 16 18 N -0.73 -16.97 5.11 -52.54 -0.27 -17.24 16 19 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 23 Si 0.88 21.87 27.73 -169.99 -4.71 17.15 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 27 C -0.15 -2.22 7.39 -25.92 -0.19 -2.42 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.73 7.97 -51.93 -0.41 0.31 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.17 -0.01 8.06 -52.49 -0.42 -0.44 16 33 H 0.19 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.40 4.93 8.45 -40.82 -0.35 4.59 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.10 7.92 -51.93 -0.41 0.68 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.36 8.23 5.76 -40.82 -0.24 8.00 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -37.90 376.34 -8.82 -46.72 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.05 Total: 8.87 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.24 Total: -0.89 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.42 Total: -67.70 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.90 -8.82 -46.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091369896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.764 kcal (2) G-P(sol) polarization free energy of solvation -37.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds