Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53780 * 111.85858 * 2 1 4 4 N 1.47216 * 106.37753 * 140.61013 * 3 2 1 5 5 C 1.36934 * 126.70647 * 148.74711 * 4 3 2 6 6 H 1.08001 * 119.99732 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99617 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47433 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47100 * 119.99788 * 9 7 5 12 12 H 1.48503 * 109.47101 * 239.99498 * 9 7 5 13 13 C 1.47224 * 106.59433 * 328.72751 * 4 3 2 14 14 C 1.53784 * 106.37509 * 31.27448 * 13 4 3 15 15 H 1.08998 * 111.85449 * 218.43338 * 14 13 4 16 16 C 1.53770 * 109.34627 * 93.95498 * 14 13 4 17 17 N 1.47216 * 106.37912 * 228.51178 * 16 14 13 18 18 C 1.34775 * 126.70741 * 211.26783 * 17 16 14 19 19 O 1.21708 * 120.00334 * 180.08945 * 18 17 16 20 20 C 1.46601 * 119.99442 * 0.10054 * 18 17 16 21 21 C 1.41158 * 126.56481 * 350.37010 * 20 18 17 22 22 N 1.30520 * 108.27170 * 179.97438 * 21 20 18 23 23 N 1.39991 * 109.37318 * 359.97438 * 22 21 20 24 24 C 1.38446 * 143.84977 * 179.97438 * 23 22 21 25 25 C 1.33082 * 108.42349 * 180.02562 * 24 23 22 26 26 N 1.38057 * 108.13087 * 0.26155 * 25 24 23 27 27 H 0.96999 * 126.15481 * 179.71411 * 26 25 24 28 28 C 1.35014 * 108.27136 * 0.02562 * 23 22 21 29 29 C 1.47215 * 106.59005 * 31.53838 * 17 16 14 30 30 H 1.08998 * 109.47046 * 302.05588 * 1 2 3 31 31 H 1.08998 * 109.46690 * 62.05862 * 1 2 3 32 32 H 1.08997 * 109.46802 * 182.05514 * 1 2 3 33 33 H 1.09000 * 110.07441 * 21.38609 * 3 2 1 34 34 H 1.08994 * 110.07785 * 259.84014 * 3 2 1 35 35 H 0.97003 * 120.00410 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.07242 * 272.04603 * 13 4 3 37 37 H 1.08991 * 110.12196 * 150.52945 * 13 4 3 38 38 H 1.09003 * 110.07406 * 109.28821 * 16 14 13 39 39 H 1.08999 * 110.07449 * 347.74544 * 16 14 13 40 40 H 1.08001 * 125.86238 * 359.97438 * 21 20 18 41 41 H 1.08006 * 125.79224 * 359.97438 * 24 23 22 42 42 H 1.07994 * 125.92962 * 180.02562 * 25 24 23 43 43 H 1.09002 * 110.07499 * 87.69808 * 29 17 16 44 44 H 1.09011 * 110.07129 * 209.23663 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2703 1.4061 0.8963 5 6 4.4003 2.1716 0.7865 6 1 4.4959 2.8803 -0.0228 7 6 5.4230 2.0366 1.7154 8 7 5.3063 1.1733 2.7019 9 14 6.9643 3.0814 1.5659 10 1 6.8488 3.9671 0.3796 11 1 7.1216 3.9092 2.7888 12 1 8.1479 2.1982 1.4104 13 6 2.9855 0.4014 1.9341 14 6 2.1092 -0.6730 1.2687 15 1 1.3347 -1.0393 1.9424 16 6 3.0040 -1.8117 0.7518 17 7 2.5853 -2.0715 -0.6355 18 6 2.6203 -3.2551 -1.2792 19 8 2.2433 -3.3312 -2.4340 20 6 3.1123 -4.4509 -0.5884 21 6 3.7534 -4.4919 0.6685 22 7 4.0391 -5.7358 0.9417 23 7 3.6039 -6.5536 -0.1079 24 6 3.5355 -7.8639 -0.5497 25 6 2.9353 -7.8764 -1.7374 26 7 2.6181 -6.5752 -2.0723 27 1 2.1774 -6.2849 -2.8862 28 6 3.0353 -5.7689 -1.0480 29 6 2.1271 -0.7847 -1.1843 30 1 -0.3633 0.5454 0.8710 31 1 -0.3633 0.4815 -0.9079 32 1 -0.3633 -1.0270 0.0369 33 1 1.3572 2.1294 0.3733 34 1 2.4095 1.7073 -1.0076 35 1 6.0208 1.0792 3.3512 36 1 2.4480 0.8619 2.7632 37 1 3.9147 -0.0422 2.2915 38 1 2.8607 -2.7053 1.3594 39 1 4.0500 -1.5060 0.7759 40 1 3.9703 -3.6403 1.2962 41 1 3.9070 -8.7291 -0.0206 42 1 2.7350 -8.7520 -2.3370 43 1 2.9685 -0.2394 -1.6119 44 1 1.3642 -0.9526 -1.9446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092230221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = 150.430295 kcal Electronic energy + Delta-G solvation = -28739.382966 eV Core-core repulsion = 24889.512660 eV Total energy + Delta-G solvation = -3849.870306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.18361 -40.07768 -38.39775 -37.67563 -34.80317 -33.04545 -32.58713 -30.81582 -29.96538 -29.69955 -28.88389 -26.28890 -25.66521 -25.15210 -23.12947 -22.55034 -21.91993 -21.23038 -20.05614 -19.60129 -18.62362 -17.46411 -16.75604 -16.44126 -16.30506 -15.65227 -15.35593 -15.06498 -14.72203 -14.62394 -14.28497 -13.99039 -13.70782 -13.35063 -13.24161 -13.08149 -12.74868 -12.65629 -12.34168 -11.86755 -11.66713 -11.59012 -11.24142 -10.96385 -10.86774 -10.77347 -10.71443 -10.63408 -10.10844 -10.05642 -9.81404 -9.73544 -9.56830 -9.47707 -9.26441 -8.70513 -8.23870 -7.66471 -6.87656 -5.65659 -3.09659 1.45148 1.78586 1.91272 2.38811 2.66025 3.39944 3.44424 3.46524 3.48123 3.71739 4.25627 4.48264 4.56632 4.71626 4.88374 5.07116 5.09359 5.19370 5.26552 5.42183 5.47925 5.49699 5.56705 5.63224 5.77583 5.79589 5.88463 6.00930 6.12112 6.22722 6.34028 6.37095 6.39791 6.42497 6.55940 6.61658 6.72279 6.82406 6.84245 6.92397 6.96072 7.40950 7.61296 7.65094 7.81379 8.04545 8.37922 8.62186 9.20404 9.80868 10.48225 11.35920 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.003587 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.685100 B = 7803.906349 C = 8804.295472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C 0.144 3.856 4 N -0.595 5.595 5 C -0.216 4.216 6 H 0.079 0.921 7 C -0.011 4.011 8 N -0.921 5.921 9 Si 0.914 3.086 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.140 3.860 14 C -0.116 4.116 15 H 0.078 0.922 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.618 3.382 19 O -0.580 6.580 20 C -0.325 4.325 21 C 0.117 3.883 22 N -0.302 5.302 23 N -0.309 5.309 24 C 0.003 3.997 25 C 0.023 3.977 26 N -0.575 5.575 27 H 0.443 0.557 28 C 0.317 3.683 29 C 0.129 3.871 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.044 0.956 35 H 0.252 0.748 36 H 0.009 0.991 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.216 0.784 41 H 0.191 0.809 42 H 0.204 0.796 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -17.138 -6.495 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.090 4.090 3 C 0.017 3.983 4 N -0.318 5.318 5 C -0.344 4.344 6 H 0.096 0.904 7 C -0.206 4.206 8 N -0.570 5.570 9 Si 0.745 3.255 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.218 1.218 13 C 0.014 3.986 14 C -0.136 4.136 15 H 0.097 0.903 16 C -0.023 4.023 17 N -0.337 5.337 18 C 0.410 3.590 19 O -0.463 6.463 20 C -0.345 4.345 21 C -0.066 4.066 22 N -0.123 5.123 23 N -0.079 5.079 24 C -0.124 4.124 25 C -0.104 4.104 26 N -0.187 5.187 27 H 0.285 0.715 28 C 0.082 3.918 29 C 0.007 3.993 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.232 0.768 41 H 0.208 0.792 42 H 0.220 0.780 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.086 -18.030 -6.106 20.312 hybrid contribution 0.217 1.123 -0.917 1.466 sum -6.868 -16.907 -7.023 19.554 Atomic orbital electron populations 1.21631 0.93808 1.01085 1.01531 1.22204 0.94769 0.97357 0.94690 1.21404 0.90105 0.92057 0.94766 1.44500 1.15099 1.44114 1.28123 1.19129 0.92176 1.13983 1.09101 0.90356 1.24733 0.98704 0.99823 0.97356 1.69574 1.32910 1.38077 1.16462 0.86001 0.82964 0.79328 0.77225 1.20603 1.21798 1.21766 1.21998 0.99396 0.87721 0.89447 1.23046 0.97744 0.96545 0.96296 0.90344 1.22713 1.00225 0.97955 0.81381 1.48202 1.63611 1.07481 1.14410 1.16424 0.77122 0.80814 0.84675 1.90704 1.52457 1.85768 1.17325 1.18409 1.25961 0.89124 1.01037 1.24889 0.92626 0.95192 0.93891 1.77558 1.27423 1.01065 1.06286 1.47119 1.40406 1.05909 1.14422 1.21575 1.09338 0.85103 0.96347 1.22247 1.03541 0.87651 0.97000 1.41544 1.53461 1.04712 1.19013 0.71532 1.19175 0.96247 0.91113 0.85301 1.22090 0.98741 0.82799 0.95690 0.92319 0.92850 0.93116 0.96119 0.93809 0.93668 0.97290 0.85473 0.90747 0.89677 0.76793 0.79161 0.77957 0.91106 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.53 37.16 0.32 -1.45 16 2 C -0.09 -1.51 1.10 -152.55 -0.17 -1.68 16 3 C 0.14 2.88 6.19 -3.25 -0.02 2.86 16 4 N -0.59 -14.41 3.39 -171.13 -0.58 -14.99 16 5 C -0.22 -5.77 10.34 -15.06 -0.16 -5.92 16 6 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 7 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 8 N -0.92 -25.46 10.08 55.49 0.56 -24.90 16 9 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.14 3.16 5.56 -3.24 -0.02 3.14 16 14 C -0.12 -2.07 3.66 -88.83 -0.32 -2.40 16 15 H 0.08 1.28 7.92 -51.93 -0.41 0.86 16 16 C 0.10 1.71 5.00 -3.25 -0.02 1.69 16 17 N -0.61 -10.77 3.32 -172.94 -0.57 -11.34 16 18 C 0.62 11.28 7.84 -12.89 -0.10 11.18 16 19 O -0.58 -11.68 17.15 5.18 0.09 -11.59 16 20 C -0.33 -5.31 6.08 -104.83 -0.64 -5.95 16 21 C 0.12 1.79 10.28 -17.00 -0.17 1.62 16 22 N -0.30 -4.71 12.61 30.84 0.39 -4.32 16 23 N -0.31 -4.20 4.67 -11.88 -0.06 -4.26 16 24 C 0.00 0.02 11.91 -16.35 -0.19 -0.17 16 25 C 0.02 0.15 11.92 -16.54 -0.20 -0.05 16 26 N -0.58 -5.62 6.24 -11.98 -0.07 -5.70 16 27 H 0.44 3.63 8.96 -40.82 -0.37 3.27 16 28 C 0.32 4.50 8.39 -154.52 -1.30 3.21 16 29 C 0.13 2.30 6.15 -3.08 -0.02 2.28 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.04 0.86 7.51 -51.93 -0.39 0.47 16 35 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.13 3.18 4.81 -51.93 -0.25 2.93 16 38 H 0.07 1.10 4.88 -51.93 -0.25 0.85 16 39 H 0.09 1.65 7.39 -51.93 -0.38 1.27 16 40 H 0.22 2.99 4.95 -52.49 -0.26 2.74 16 41 H 0.19 0.97 8.06 -52.48 -0.42 0.54 16 42 H 0.20 0.21 8.06 -52.49 -0.42 -0.21 16 43 H 0.07 1.38 7.41 -51.93 -0.38 0.99 16 44 H 0.07 1.19 7.64 -51.92 -0.40 0.80 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -34.42 350.94 -8.67 -43.09 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.59 Total: 4.15 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.10 Total: 7.96 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.34 Total: -65.50 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.42 -8.67 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092230221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.517 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds