Wall clock time and date at job start Tue Mar 31 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99761 * 2 1 4 4 H 1.48502 * 109.47218 * 274.98653 * 3 2 1 5 5 H 1.48499 * 109.47170 * 34.98510 * 3 2 1 6 6 H 1.48500 * 109.47115 * 154.98395 * 3 2 1 7 7 C 1.38805 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99676 * 185.06621 * 7 2 1 9 9 N 1.36932 * 120.00531 * 5.06875 * 7 2 1 10 10 C 1.47576 * 134.49757 * 173.47898 * 9 7 2 11 11 C 1.53945 * 86.11907 * 155.35700 * 10 9 7 12 12 N 1.46498 * 113.74001 * 137.95014 * 11 10 9 13 13 C 1.46762 * 124.34598 * 122.12479 * 12 11 10 14 14 C 1.54479 * 105.53551 * 163.21521 * 13 12 11 15 15 H 1.09005 * 110.96785 * 267.08835 * 14 13 12 16 16 N 1.46499 * 110.97218 * 143.32605 * 14 13 12 17 17 C 1.34783 * 120.00365 * 161.16535 * 16 14 13 18 18 O 1.21557 * 119.99220 * 359.97438 * 17 16 14 19 19 C 1.47840 * 120.00333 * 180.02562 * 17 16 14 20 20 C 1.39580 * 120.14235 * 359.72077 * 19 17 16 21 21 C 1.37955 * 119.85144 * 179.79566 * 20 19 17 22 22 C 1.38359 * 120.14495 * 0.48463 * 21 20 19 23 23 C 1.38362 * 120.29160 * 359.74596 * 22 21 20 24 24 C 1.37954 * 120.14766 * 0.02562 * 23 22 21 25 25 C 1.54630 * 101.76755 * 25.20348 * 14 13 12 26 26 C 1.34421 * 124.35413 * 301.95026 * 12 11 10 27 27 O 1.21279 * 124.94185 * 0.43142 * 26 12 11 28 28 C 1.47820 * 134.45132 * 353.34333 * 9 7 2 29 29 H 0.96997 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.76886 * 41.05150 * 10 9 7 31 31 H 1.09003 * 113.76807 * 269.65839 * 10 9 7 32 32 H 1.08994 * 113.73914 * 269.15477 * 11 10 9 33 33 H 1.09002 * 110.39536 * 44.09731 * 13 12 11 34 34 H 1.09001 * 110.04355 * 282.14002 * 13 12 11 35 35 H 0.96996 * 120.00391 * 341.16843 * 16 14 13 36 36 H 1.07993 * 120.07302 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.93056 * 180.23366 * 21 20 19 38 38 H 1.08000 * 119.86014 * 179.76745 * 22 21 20 39 39 H 1.08006 * 119.92578 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.08029 * 179.97438 * 24 23 22 41 41 H 1.08990 * 110.48817 * 216.52365 * 25 14 13 42 42 H 1.08999 * 110.48160 * 93.88195 * 25 14 13 43 43 H 1.09001 * 113.76325 * 90.38168 * 28 9 7 44 44 H 1.08990 * 113.83684 * 318.91957 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3298 -2.3857 -0.1037 10 6 1.7288 -3.7984 -0.2551 11 6 0.3712 -4.1416 0.3844 12 7 -0.3172 -5.2633 -0.2593 13 6 -0.7275 -6.4904 0.4334 14 6 -1.7612 -7.1642 -0.4960 15 1 -2.7756 -6.8622 -0.2351 16 7 -1.6252 -8.6224 -0.4616 17 6 -2.6394 -9.4041 -0.8824 18 8 -3.6671 -8.8989 -1.2900 19 6 -2.5024 -10.8757 -0.8470 20 6 -1.3218 -11.4588 -0.3839 21 6 -1.2020 -12.8327 -0.3496 22 6 -2.2451 -13.6321 -0.7823 23 6 -3.4162 -13.0604 -1.2470 24 6 -3.5508 -11.6879 -1.2822 25 6 -1.3552 -6.6030 -1.8785 26 6 -0.6570 -5.2995 -1.5593 27 8 -0.4321 -4.4176 -2.3609 28 6 -0.1000 -2.7610 -0.1072 29 1 -0.4849 0.8400 -0.0004 30 1 2.5862 -4.0806 0.3560 31 1 1.8198 -4.1205 -1.2924 32 1 0.4078 -4.2319 1.4699 33 1 -1.1838 -6.2500 1.3937 34 1 0.1329 -7.1439 0.5770 35 1 -0.8053 -9.0256 -0.1359 36 1 -0.5054 -10.8358 -0.0498 37 1 -0.2905 -13.2852 0.0120 38 1 -2.1449 -14.7072 -0.7569 39 1 -4.2269 -13.6901 -1.5830 40 1 -4.4652 -11.2428 -1.6455 41 1 -2.2382 -6.4228 -2.4914 42 1 -0.6730 -7.2876 -2.3826 43 1 -0.5473 -2.7776 -1.1011 44 1 -0.7001 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094697138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:12 Heat of formation + Delta-G solvation = 32.245942 kcal Electronic energy + Delta-G solvation = -27075.627342 eV Core-core repulsion = 23188.339427 eV Total energy + Delta-G solvation = -3887.287915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.91243 -40.09436 -38.62252 -37.22894 -36.39629 -34.27184 -32.35435 -31.67630 -31.39257 -30.07246 -27.59295 -27.09675 -24.73952 -24.44813 -23.39165 -22.99144 -21.77582 -20.91448 -20.37226 -18.52760 -18.32055 -17.09258 -16.74851 -16.50484 -16.14984 -15.75383 -15.39599 -15.15410 -14.93082 -14.76167 -14.35307 -14.08133 -13.92737 -13.65499 -13.58882 -13.47586 -13.32915 -12.95974 -12.45313 -12.14342 -12.03829 -11.82626 -11.59742 -11.53221 -11.44028 -11.17292 -10.83990 -10.69628 -10.31775 -10.20083 -9.96161 -9.73140 -9.49135 -9.48411 -9.44066 -9.14802 -8.64578 -8.19365 -6.79428 -5.72741 -3.03835 0.39988 0.88504 2.48834 2.62296 2.92941 3.29075 3.43317 3.44388 3.48986 3.50109 4.13166 4.28424 4.36182 4.45291 4.48067 4.52589 4.65287 4.80096 4.87617 4.89283 5.00964 5.22998 5.30752 5.32170 5.39486 5.49403 5.53860 5.63066 5.64711 5.75392 5.81813 5.84093 5.90944 5.96872 6.09678 6.28787 6.39232 6.52036 6.58900 6.88247 7.08584 7.28408 7.48793 7.59511 7.64597 7.83341 8.01683 8.55404 9.08964 9.75332 10.65138 11.45148 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.002074 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.570189 B =13496.726443 C =13819.824840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.606 5.606 13 C 0.100 3.900 14 C 0.135 3.865 15 H 0.113 0.887 16 N -0.716 5.716 17 C 0.561 3.439 18 O -0.529 6.529 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.128 4.128 22 C -0.095 4.095 23 C -0.128 4.128 24 C -0.059 4.059 25 C -0.167 4.167 26 C 0.515 3.485 27 O -0.506 6.506 28 C 0.156 3.844 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -30.649 2.354 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.005 4.005 12 N -0.341 5.341 13 C -0.025 4.025 14 C 0.030 3.970 15 H 0.131 0.869 16 N -0.369 5.369 17 C 0.348 3.652 18 O -0.405 6.405 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.113 4.113 23 C -0.146 4.146 24 C -0.078 4.078 25 C -0.208 4.208 26 C 0.301 3.699 27 O -0.380 6.380 28 C 0.030 3.970 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.287 -29.342 1.706 29.863 hybrid contribution 0.952 0.590 0.105 1.125 sum -4.335 -28.752 1.812 29.134 Atomic orbital electron populations 1.69847 1.05072 1.25376 1.55966 1.24850 0.95695 0.97579 1.02243 0.86114 0.78655 0.83538 0.77542 1.21598 1.21712 1.20555 1.18975 0.90671 0.81817 1.43551 0.90151 1.45690 1.02432 1.00534 1.84474 1.22916 0.94146 0.86846 0.97662 1.24106 0.94244 0.85180 0.96955 1.48500 1.58565 1.17443 1.09641 1.22183 0.96868 0.87101 0.96369 1.21832 1.01129 0.79086 0.94977 0.86893 1.45843 1.18535 1.06079 1.66413 1.18287 0.83161 0.86510 0.77210 1.90811 1.28585 1.75385 1.45762 1.19943 0.96188 0.92734 1.04869 1.21339 0.96293 0.95520 0.97317 1.21139 0.99434 0.93395 1.00618 1.21418 0.93228 1.00299 0.96393 1.21204 0.98263 0.94696 1.00474 1.21332 0.98202 0.93180 0.95105 1.22831 1.02865 0.96664 0.98473 1.20599 0.79009 0.87985 0.82272 1.90798 1.54891 1.41210 1.51087 1.22737 0.88232 0.86113 0.99939 0.93605 0.94029 0.94250 0.87632 0.89485 0.91040 0.76192 0.85496 0.85284 0.85535 0.85237 0.84520 0.87672 0.87904 0.92444 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.36 11.51 55.49 0.64 -27.72 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.86 29.56 -169.99 -5.02 17.83 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.51 10.69 -15.06 -0.16 -6.67 16 8 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -16.41 3.70 -177.88 -0.66 -17.07 16 10 C 0.11 2.43 8.43 -2.97 -0.03 2.40 16 11 C 0.10 1.85 4.81 -70.15 -0.34 1.52 16 12 N -0.61 -9.29 3.16 -166.64 -0.53 -9.82 16 13 C 0.10 0.97 7.07 -3.12 -0.02 0.95 16 14 C 0.14 1.33 3.43 -66.30 -0.23 1.10 16 15 H 0.11 1.23 7.73 -51.93 -0.40 0.83 16 16 N -0.72 -5.55 5.13 -53.16 -0.27 -5.82 16 17 C 0.56 5.60 7.77 -12.33 -0.10 5.50 16 18 O -0.53 -7.28 16.09 5.32 0.09 -7.19 16 19 C -0.13 -1.08 5.87 -104.97 -0.62 -1.70 16 20 C -0.09 -0.49 9.54 -39.18 -0.37 -0.86 16 21 C -0.13 -0.63 10.03 -39.64 -0.40 -1.03 16 22 C -0.10 -0.47 10.04 -39.49 -0.40 -0.87 16 23 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 24 C -0.06 -0.46 9.60 -39.19 -0.38 -0.84 16 25 C -0.17 -2.05 6.59 -26.74 -0.18 -2.23 16 26 C 0.52 8.84 7.42 -10.86 -0.08 8.76 16 27 O -0.51 -11.44 14.60 5.56 0.08 -11.36 16 28 C 0.16 3.92 6.81 -2.83 -0.02 3.90 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.92 7.22 -51.93 -0.37 0.54 16 32 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.53 7.77 -51.93 -0.40 0.12 16 35 H 0.40 1.93 6.40 -40.82 -0.26 1.67 16 36 H 0.13 0.41 6.41 -52.49 -0.34 0.08 16 37 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.14 1.11 7.65 -52.49 -0.40 0.71 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.06 1.61 5.75 -51.93 -0.30 1.31 16 44 H 0.07 1.80 7.36 -51.93 -0.38 1.42 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -38.08 365.95 -9.74 -47.83 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.78 Total: -0.69 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -3.80 Total: 8.49 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.82 Total: -60.42 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.08 -9.74 -47.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094697138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.075 kcal (2) G-P(sol) polarization free energy of solvation -38.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds