Wall clock time and date at job start Tue Mar 31 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99761 * 2 1 4 4 H 1.48502 * 109.47218 * 274.98653 * 3 2 1 5 5 H 1.48499 * 109.47170 * 34.98510 * 3 2 1 6 6 H 1.48500 * 109.47115 * 154.98395 * 3 2 1 7 7 C 1.38805 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99676 * 185.06621 * 7 2 1 9 9 N 1.36932 * 120.00531 * 5.06875 * 7 2 1 10 10 C 1.47576 * 134.49757 * 173.47898 * 9 7 2 11 11 C 1.53945 * 86.11907 * 155.35700 * 10 9 7 12 12 N 1.46498 * 113.74001 * 137.95014 * 11 10 9 13 13 C 1.46762 * 124.34598 * 122.12479 * 12 11 10 14 14 C 1.54479 * 105.53551 * 163.21521 * 13 12 11 15 15 H 1.09005 * 110.96785 * 267.08835 * 14 13 12 16 16 N 1.46499 * 110.97218 * 143.32605 * 14 13 12 17 17 C 1.34783 * 120.00365 * 161.16535 * 16 14 13 18 18 O 1.21557 * 119.99220 * 359.97438 * 17 16 14 19 19 C 1.47840 * 120.00333 * 180.02562 * 17 16 14 20 20 C 1.39580 * 120.14235 * 359.72077 * 19 17 16 21 21 C 1.37955 * 119.85144 * 179.79566 * 20 19 17 22 22 C 1.38359 * 120.14495 * 0.48463 * 21 20 19 23 23 C 1.38362 * 120.29160 * 359.74596 * 22 21 20 24 24 C 1.37954 * 120.14766 * 0.02562 * 23 22 21 25 25 C 1.54630 * 101.76755 * 25.20348 * 14 13 12 26 26 C 1.34421 * 124.35413 * 301.95026 * 12 11 10 27 27 O 1.21279 * 124.94185 * 0.43142 * 26 12 11 28 28 C 1.47820 * 134.45132 * 353.34333 * 9 7 2 29 29 H 0.96997 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09003 * 113.76886 * 41.05150 * 10 9 7 31 31 H 1.09003 * 113.76807 * 269.65839 * 10 9 7 32 32 H 1.08994 * 113.73914 * 269.15477 * 11 10 9 33 33 H 1.09002 * 110.39536 * 44.09731 * 13 12 11 34 34 H 1.09001 * 110.04355 * 282.14002 * 13 12 11 35 35 H 0.96996 * 120.00391 * 341.16843 * 16 14 13 36 36 H 1.07993 * 120.07302 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.93056 * 180.23366 * 21 20 19 38 38 H 1.08000 * 119.86014 * 179.76745 * 22 21 20 39 39 H 1.08006 * 119.92578 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.08029 * 179.97438 * 24 23 22 41 41 H 1.08990 * 110.48817 * 216.52365 * 25 14 13 42 42 H 1.08999 * 110.48160 * 93.88195 * 25 14 13 43 43 H 1.09001 * 113.76325 * 90.38168 * 28 9 7 44 44 H 1.08990 * 113.83684 * 318.91957 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3298 -2.3857 -0.1037 10 6 1.7288 -3.7984 -0.2551 11 6 0.3712 -4.1416 0.3844 12 7 -0.3172 -5.2633 -0.2593 13 6 -0.7275 -6.4904 0.4334 14 6 -1.7612 -7.1642 -0.4960 15 1 -2.7756 -6.8622 -0.2351 16 7 -1.6252 -8.6224 -0.4616 17 6 -2.6394 -9.4041 -0.8824 18 8 -3.6671 -8.8989 -1.2900 19 6 -2.5024 -10.8757 -0.8470 20 6 -1.3218 -11.4588 -0.3839 21 6 -1.2020 -12.8327 -0.3496 22 6 -2.2451 -13.6321 -0.7823 23 6 -3.4162 -13.0604 -1.2470 24 6 -3.5508 -11.6879 -1.2822 25 6 -1.3552 -6.6030 -1.8785 26 6 -0.6570 -5.2995 -1.5593 27 8 -0.4321 -4.4176 -2.3609 28 6 -0.1000 -2.7610 -0.1072 29 1 -0.4849 0.8400 -0.0004 30 1 2.5862 -4.0806 0.3560 31 1 1.8198 -4.1205 -1.2924 32 1 0.4078 -4.2319 1.4699 33 1 -1.1838 -6.2500 1.3937 34 1 0.1329 -7.1439 0.5770 35 1 -0.8053 -9.0256 -0.1359 36 1 -0.5054 -10.8358 -0.0498 37 1 -0.2905 -13.2852 0.0120 38 1 -2.1449 -14.7072 -0.7569 39 1 -4.2269 -13.6901 -1.5830 40 1 -4.4652 -11.2428 -1.6455 41 1 -2.2382 -6.4228 -2.4914 42 1 -0.6730 -7.2876 -2.3826 43 1 -0.5473 -2.7776 -1.1011 44 1 -0.7001 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094697138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:11 Heat of formation + Delta-G solvation = 4.724695 kcal Electronic energy + Delta-G solvation = -27076.820753 eV Core-core repulsion = 23188.339427 eV Total energy + Delta-G solvation = -3888.481326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97101 -41.02031 -39.33616 -38.84861 -37.63643 -35.36696 -34.22543 -32.55834 -31.82339 -31.16690 -29.19225 -28.38746 -26.62873 -25.42443 -24.84728 -23.47758 -22.60708 -22.15776 -21.53499 -19.81063 -19.12058 -18.76957 -18.00798 -17.62751 -17.03375 -16.89519 -16.67428 -16.14455 -16.05571 -15.67029 -15.57108 -15.38027 -15.03900 -14.71962 -14.65938 -14.51582 -14.19720 -14.07016 -13.57702 -13.49868 -13.44729 -13.29742 -12.84558 -12.80421 -12.61002 -12.55544 -12.29938 -12.02522 -11.95969 -11.89287 -11.52182 -11.17745 -11.04517 -10.70203 -10.23918 -9.89335 -9.84411 -9.59682 -8.94340 -7.95197 -5.28815 -0.09809 0.47464 1.41764 1.45935 1.54515 1.56114 1.77456 1.85898 2.12903 2.47654 2.94981 3.23139 3.28946 3.46505 3.47209 3.67980 3.78816 3.89564 3.96251 4.00622 4.08493 4.24520 4.30472 4.49864 4.52153 4.56772 4.59481 4.62596 4.74802 4.80960 4.85951 4.92340 4.93068 5.11469 5.17032 5.23204 5.32415 5.39855 5.46419 5.50837 5.57351 5.82978 5.87753 6.00072 6.22318 6.46842 6.86521 7.14697 7.20270 7.56216 8.52264 9.23009 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.002074 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.570189 B =13496.726443 C =13819.824840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.983 3.017 4 H -0.293 1.293 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.236 4.236 8 H 0.089 0.911 9 N -0.636 5.636 10 C 0.114 3.886 11 C 0.137 3.863 12 N -0.604 5.604 13 C 0.101 3.899 14 C 0.148 3.852 15 H 0.102 0.898 16 N -0.696 5.696 17 C 0.560 3.440 18 O -0.577 6.577 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.082 4.082 25 C -0.154 4.154 26 C 0.505 3.495 27 O -0.572 6.572 28 C 0.149 3.851 29 H 0.248 0.752 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.420 0.580 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.020 0.980 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -34.007 4.357 34.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.811 3.189 4 H -0.220 1.220 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.365 4.365 8 H 0.107 0.893 9 N -0.362 5.362 10 C -0.012 4.012 11 C 0.033 3.967 12 N -0.337 5.337 13 C -0.021 4.021 14 C 0.042 3.958 15 H 0.120 0.880 16 N -0.350 5.350 17 C 0.349 3.651 18 O -0.457 6.457 19 C -0.158 4.158 20 C -0.101 4.101 21 C -0.148 4.148 22 C -0.111 4.111 23 C -0.153 4.153 24 C -0.101 4.101 25 C -0.195 4.195 26 C 0.293 3.707 27 O -0.451 6.451 28 C 0.022 3.978 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.261 0.739 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.038 0.962 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.063 -32.800 3.760 33.157 hybrid contribution 0.262 1.481 -0.561 1.605 sum -2.801 -31.319 3.200 31.607 Atomic orbital electron populations 1.70061 1.06779 1.25719 1.57665 1.25798 0.96623 1.01341 1.02659 0.84993 0.78150 0.78719 0.77078 1.22039 1.21735 1.18329 1.19454 0.91393 0.83171 1.42448 0.89307 1.46128 1.03489 1.02063 1.84557 1.23003 0.96770 0.83979 0.97454 1.23430 0.91625 0.83400 0.98257 1.48443 1.57541 1.18284 1.09478 1.22532 0.98406 0.84921 0.96234 1.21570 1.00778 0.80277 0.93180 0.87954 1.45589 1.18905 1.04823 1.65675 1.18669 0.82655 0.87509 0.76223 1.90793 1.30549 1.76305 1.48028 1.19880 0.97604 0.91359 1.06976 1.21636 0.95821 0.96402 0.96221 1.21536 1.00344 0.93110 0.99762 1.21804 0.92585 1.01787 0.94948 1.21422 0.99442 0.93950 1.00473 1.21381 0.98018 0.94356 0.96315 1.22744 1.02194 0.94417 1.00175 1.21423 0.78372 0.88625 0.82293 1.90766 1.57435 1.43825 1.53067 1.22541 0.87388 0.90318 0.97521 0.94269 0.90936 0.95934 0.84128 0.87096 0.86830 0.73949 0.82779 0.82552 0.83027 0.83769 0.86252 0.88784 0.85919 0.96191 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.40 11.51 21.65 0.25 -61.15 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.98 47.82 29.56 68.60 2.03 49.85 16 4 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -14.00 10.69 84.03 0.90 -13.10 16 8 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 9 N -0.64 -35.04 3.70 -716.69 -2.65 -37.69 16 10 C 0.11 4.86 8.43 86.49 0.73 5.59 16 11 C 0.14 5.00 4.81 46.75 0.22 5.23 16 12 N -0.60 -17.48 3.16 -799.72 -2.52 -20.00 16 13 C 0.10 1.57 7.07 86.83 0.61 2.18 16 14 C 0.15 2.58 3.43 46.05 0.16 2.74 16 15 H 0.10 2.11 7.73 -2.38 -0.02 2.09 16 16 N -0.70 -8.75 5.13 -440.38 -2.26 -11.01 16 17 C 0.56 10.56 7.77 86.78 0.67 11.24 16 18 O -0.58 -16.20 16.09 -3.90 -0.06 -16.26 16 19 C -0.16 -2.28 5.87 -20.09 -0.12 -2.39 16 20 C -0.08 -0.65 9.54 22.53 0.21 -0.44 16 21 C -0.13 -0.77 10.03 22.23 0.22 -0.55 16 22 C -0.09 -0.63 10.04 22.33 0.22 -0.41 16 23 C -0.14 -1.37 10.03 22.23 0.22 -1.15 16 24 C -0.08 -1.26 9.60 22.53 0.22 -1.04 16 25 C -0.15 -3.68 6.59 30.59 0.20 -3.47 16 26 C 0.50 17.45 7.42 87.90 0.65 18.10 16 27 O -0.57 -27.34 14.60 -3.03 -0.04 -27.38 16 28 C 0.15 7.77 6.81 86.44 0.59 8.36 16 29 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.02 1.06 7.22 -2.39 -0.02 1.04 16 32 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 0.95 7.77 -2.39 -0.02 0.93 16 35 H 0.42 2.09 6.40 -92.71 -0.59 1.49 16 36 H 0.15 0.24 6.41 -2.91 -0.02 0.22 16 37 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.15 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.12 2.14 7.65 -2.91 -0.02 2.11 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.12 2.45 8.08 -2.39 -0.02 2.43 16 43 H 0.02 1.21 5.75 -2.39 -0.01 1.19 16 44 H 0.04 2.14 7.36 -2.39 -0.02 2.13 16 Total: -1.00 -90.70 365.95 1.36 -89.33 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.44 Total: 7.26 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 6.19 Total: 27.05 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -7.19 Total: -129.85 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.11 Total: -43.64 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -90.70 1.36 -89.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094697138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -90.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds