Wall clock time and date at job start Tue Mar 31 2020 04:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48508 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47175 * 299.99675 * 3 2 1 6 6 H 1.48499 * 109.47470 * 60.00032 * 3 2 1 7 7 C 1.38812 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49315 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11716 * 155.35359 * 10 9 7 12 12 N 1.46501 * 113.74051 * 137.94779 * 11 10 9 13 13 C 1.46768 * 124.34528 * 121.92672 * 12 11 10 14 14 C 1.54479 * 105.47008 * 162.98291 * 13 12 11 15 15 H 1.09004 * 110.96814 * 143.53721 * 14 13 12 16 16 N 1.46495 * 111.00056 * 267.27780 * 14 13 12 17 17 C 1.34778 * 120.00062 * 198.85408 * 16 14 13 18 18 O 1.21548 * 120.00041 * 359.97438 * 17 16 14 19 19 C 1.47844 * 119.99915 * 180.02562 * 17 16 14 20 20 C 1.39580 * 120.14619 * 359.72632 * 19 17 16 21 21 C 1.37953 * 119.85233 * 179.74484 * 20 19 17 22 22 C 1.38361 * 120.14847 * 0.52783 * 21 20 19 23 23 C 1.38362 * 120.28815 * 359.74765 * 22 21 20 24 24 C 1.37955 * 120.14627 * 359.96802 * 23 22 21 25 25 C 1.54623 * 101.76734 * 25.41638 * 14 13 12 26 26 C 1.34735 * 124.30373 * 301.88768 * 12 11 10 27 27 O 1.21281 * 125.12016 * 0.40331 * 26 12 11 28 28 C 1.47816 * 134.45398 * 359.86087 * 9 7 2 29 29 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 30 30 H 1.08994 * 113.77002 * 41.05452 * 10 9 7 31 31 H 1.08999 * 113.76564 * 269.65204 * 10 9 7 32 32 H 1.09002 * 113.74051 * 269.15371 * 11 10 9 33 33 H 1.09000 * 110.24529 * 43.98091 * 13 12 11 34 34 H 1.09008 * 110.31722 * 282.02153 * 13 12 11 35 35 H 0.97006 * 120.00084 * 18.85526 * 16 14 13 36 36 H 1.08000 * 120.06906 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.92860 * 180.27247 * 21 20 19 38 38 H 1.08002 * 119.85915 * 179.76473 * 22 21 20 39 39 H 1.08001 * 119.92590 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.07299 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.48860 * 93.88058 * 25 14 13 42 42 H 1.08998 * 110.48497 * 216.38951 * 25 14 13 43 43 H 1.08998 * 113.76947 * 90.38748 * 28 9 7 44 44 H 1.08996 * 113.83861 * 318.91589 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.7204 -3.8101 0.0015 11 6 0.3468 -4.0827 0.6411 12 7 -0.3331 -5.2613 0.0982 13 6 -0.7620 -6.4128 0.9008 14 6 -1.7840 -7.1690 0.0233 15 1 -1.6926 -8.2468 0.1589 16 7 -3.1503 -6.7220 0.3051 17 6 -4.1981 -7.4904 -0.0528 18 8 -4.0095 -8.5541 -0.6100 19 6 -5.5770 -7.0390 0.2311 20 6 -5.7970 -5.8202 0.8749 21 6 -7.0863 -5.4024 1.1321 22 6 -8.1598 -6.1935 0.7633 23 6 -7.9485 -7.4054 0.1300 24 6 -6.6644 -7.8322 -0.1384 25 6 -1.3476 -6.7514 -1.4001 26 6 -0.6453 -5.4262 -1.2021 27 8 -0.4002 -4.6312 -2.0847 28 6 -0.1056 -2.7571 0.0026 29 1 -0.4851 0.8400 -0.0004 30 1 2.5622 -4.0320 0.6574 31 1 1.8328 -4.2354 -0.9958 32 1 0.3585 -4.0631 1.7309 33 1 -1.2339 -6.0748 1.8233 34 1 0.0895 -7.0550 1.1266 35 1 -3.3009 -5.8729 0.7494 36 1 -4.9598 -5.2040 1.1676 37 1 -7.2581 -4.4575 1.6263 38 1 -9.1672 -5.8636 0.9704 39 1 -8.7907 -8.0185 -0.1550 40 1 -6.5008 -8.7782 -0.6332 41 1 -0.6621 -7.4874 -1.8203 42 1 -2.2175 -6.6296 -2.0454 43 1 -0.5310 -2.8723 -0.9943 44 1 -0.7187 -2.1400 0.6595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094697139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:18 Heat of formation + Delta-G solvation = 30.678822 kcal Electronic energy + Delta-G solvation = -27579.313353 eV Core-core repulsion = 23691.957483 eV Total energy + Delta-G solvation = -3887.355870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.90611 -39.98629 -38.50148 -37.23324 -36.37481 -34.07646 -32.34035 -31.57382 -31.25015 -30.08413 -27.60266 -27.12477 -24.75992 -24.37710 -23.41627 -22.87628 -21.69420 -20.75689 -20.36978 -18.42414 -18.28159 -17.11005 -16.76777 -16.38137 -16.26777 -15.56861 -15.32833 -15.07710 -14.87414 -14.60083 -14.41542 -13.97522 -13.92894 -13.65733 -13.50854 -13.45310 -13.09316 -12.75360 -12.51170 -12.02067 -11.96914 -11.79763 -11.73453 -11.44024 -11.39289 -11.35462 -10.86217 -10.69894 -10.25935 -10.15932 -9.96845 -9.64847 -9.50205 -9.35247 -9.31765 -9.12967 -8.67984 -8.19705 -6.82794 -5.73888 -3.05513 0.53051 1.02997 2.59107 2.78802 2.93886 3.23700 3.41000 3.46631 3.48666 3.57040 4.19717 4.39021 4.43594 4.49985 4.50296 4.60610 4.74500 4.78761 5.01168 5.04259 5.14439 5.22920 5.36281 5.38745 5.45920 5.52403 5.56935 5.61441 5.64091 5.74188 5.82592 5.96506 6.04420 6.10332 6.18598 6.27971 6.51201 6.53201 6.58147 6.86597 7.19308 7.26797 7.47197 7.56610 7.61075 7.91837 7.99765 8.55402 9.07210 9.73388 10.62344 11.43478 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002819 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.153501 B = 9930.500701 C =11259.636166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.611 5.611 13 C 0.096 3.904 14 C 0.135 3.865 15 H 0.116 0.884 16 N -0.716 5.716 17 C 0.563 3.437 18 O -0.535 6.535 19 C -0.137 4.137 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.130 4.130 24 C -0.060 4.060 25 C -0.167 4.167 26 C 0.513 3.487 27 O -0.508 6.508 28 C 0.154 3.846 29 H 0.252 0.748 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -18.095 5.716 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.347 5.347 13 C -0.028 4.028 14 C 0.030 3.970 15 H 0.133 0.867 16 N -0.369 5.369 17 C 0.351 3.649 18 O -0.413 6.413 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.209 4.209 26 C 0.299 3.701 27 O -0.382 6.382 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.241 0.759 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.068 -17.992 4.879 23.354 hybrid contribution 0.384 1.394 0.150 1.454 sum -13.684 -16.598 5.030 22.092 Atomic orbital electron populations 1.69834 1.05011 1.25138 1.56672 1.24794 0.95698 0.97531 1.02483 0.86032 0.78727 0.83684 0.77228 1.20463 1.21737 1.21721 1.19036 0.90230 0.81719 1.43662 0.90150 1.45715 1.02423 0.99172 1.85840 1.22922 0.94237 0.86862 0.97570 1.24051 0.94314 0.83769 0.98284 1.48619 1.59121 1.18871 1.08079 1.22322 0.97143 0.88507 0.94858 1.21858 0.80667 1.00327 0.94158 0.86650 1.45957 1.05354 1.23963 1.61617 1.18276 0.84656 0.83866 0.78109 1.90773 1.86042 1.22637 1.41850 1.19939 0.93237 0.96822 1.03970 1.21395 0.97881 0.94700 0.96228 1.21171 0.92271 1.00319 1.00656 1.21418 0.99336 0.94165 0.96363 1.21178 0.96873 0.96923 0.99857 1.21289 0.91359 0.99172 0.96083 1.22826 1.02657 0.97204 0.98174 1.20762 0.78991 0.87748 0.82554 1.90791 1.54416 1.47948 1.45042 1.22764 0.88339 0.87242 0.98885 0.93747 0.93961 0.94219 0.87696 0.89821 0.89569 0.75900 0.85385 0.85152 0.85538 0.85317 0.84638 0.87105 0.88059 0.92751 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.87 11.39 55.49 0.63 -27.24 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 9 N -0.61 -16.19 3.70 -177.87 -0.66 -16.85 16 10 C 0.11 2.40 8.44 -2.96 -0.02 2.38 16 11 C 0.10 1.82 4.81 -70.14 -0.34 1.48 16 12 N -0.61 -9.01 3.16 -166.53 -0.53 -9.54 16 13 C 0.10 0.91 6.96 -3.12 -0.02 0.89 16 14 C 0.14 1.30 3.42 -66.30 -0.23 1.07 16 15 H 0.12 1.00 7.72 -51.93 -0.40 0.60 16 16 N -0.72 -6.92 5.11 -53.17 -0.27 -7.19 16 17 C 0.56 6.36 7.77 -12.33 -0.10 6.26 16 18 O -0.54 -7.52 16.09 5.32 0.09 -7.43 16 19 C -0.14 -1.36 5.87 -104.97 -0.62 -1.98 16 20 C -0.08 -0.71 9.54 -39.19 -0.37 -1.08 16 21 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 22 C -0.09 -0.66 10.04 -39.49 -0.40 -1.05 16 23 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 24 C -0.06 -0.56 9.60 -39.19 -0.38 -0.93 16 25 C -0.17 -2.03 6.57 -26.74 -0.18 -2.20 16 26 C 0.51 8.58 7.42 -10.72 -0.08 8.50 16 27 O -0.51 -11.30 14.64 5.56 0.08 -11.22 16 28 C 0.15 3.76 6.90 -2.84 -0.02 3.74 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.92 7.23 -51.93 -0.38 0.54 16 32 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 34 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.40 3.44 6.61 -40.82 -0.27 3.17 16 36 H 0.13 0.90 6.41 -52.49 -0.34 0.57 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 43 H 0.05 1.48 5.75 -51.93 -0.30 1.18 16 44 H 0.07 1.84 7.16 -51.93 -0.37 1.46 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -37.18 366.13 -9.76 -46.94 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.80 Total: 1.91 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -3.80 Total: 7.53 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.83 Total: -60.82 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.18 -9.76 -46.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094697139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.620 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds