Wall clock time and date at job start Tue Mar 31 2020 04:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48508 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47175 * 299.99675 * 3 2 1 6 6 H 1.48499 * 109.47470 * 60.00032 * 3 2 1 7 7 C 1.38812 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49315 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11716 * 155.35359 * 10 9 7 12 12 N 1.46501 * 113.74051 * 137.94779 * 11 10 9 13 13 C 1.46768 * 124.34528 * 121.92672 * 12 11 10 14 14 C 1.54479 * 105.47008 * 162.98291 * 13 12 11 15 15 H 1.09004 * 110.96814 * 143.53721 * 14 13 12 16 16 N 1.46495 * 111.00056 * 267.27780 * 14 13 12 17 17 C 1.34778 * 120.00062 * 198.85408 * 16 14 13 18 18 O 1.21548 * 120.00041 * 359.97438 * 17 16 14 19 19 C 1.47844 * 119.99915 * 180.02562 * 17 16 14 20 20 C 1.39580 * 120.14619 * 359.72632 * 19 17 16 21 21 C 1.37953 * 119.85233 * 179.74484 * 20 19 17 22 22 C 1.38361 * 120.14847 * 0.52783 * 21 20 19 23 23 C 1.38362 * 120.28815 * 359.74765 * 22 21 20 24 24 C 1.37955 * 120.14627 * 359.96802 * 23 22 21 25 25 C 1.54623 * 101.76734 * 25.41638 * 14 13 12 26 26 C 1.34735 * 124.30373 * 301.88768 * 12 11 10 27 27 O 1.21281 * 125.12016 * 0.40331 * 26 12 11 28 28 C 1.47816 * 134.45398 * 359.86087 * 9 7 2 29 29 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 30 30 H 1.08994 * 113.77002 * 41.05452 * 10 9 7 31 31 H 1.08999 * 113.76564 * 269.65204 * 10 9 7 32 32 H 1.09002 * 113.74051 * 269.15371 * 11 10 9 33 33 H 1.09000 * 110.24529 * 43.98091 * 13 12 11 34 34 H 1.09008 * 110.31722 * 282.02153 * 13 12 11 35 35 H 0.97006 * 120.00084 * 18.85526 * 16 14 13 36 36 H 1.08000 * 120.06906 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.92860 * 180.27247 * 21 20 19 38 38 H 1.08002 * 119.85915 * 179.76473 * 22 21 20 39 39 H 1.08001 * 119.92590 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.07299 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.48860 * 93.88058 * 25 14 13 42 42 H 1.08998 * 110.48497 * 216.38951 * 25 14 13 43 43 H 1.08998 * 113.76947 * 90.38748 * 28 9 7 44 44 H 1.08996 * 113.83861 * 318.91589 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.7204 -3.8101 0.0015 11 6 0.3468 -4.0827 0.6411 12 7 -0.3331 -5.2613 0.0982 13 6 -0.7620 -6.4128 0.9008 14 6 -1.7840 -7.1690 0.0233 15 1 -1.6926 -8.2468 0.1589 16 7 -3.1503 -6.7220 0.3051 17 6 -4.1981 -7.4904 -0.0528 18 8 -4.0095 -8.5541 -0.6100 19 6 -5.5770 -7.0390 0.2311 20 6 -5.7970 -5.8202 0.8749 21 6 -7.0863 -5.4024 1.1321 22 6 -8.1598 -6.1935 0.7633 23 6 -7.9485 -7.4054 0.1300 24 6 -6.6644 -7.8322 -0.1384 25 6 -1.3476 -6.7514 -1.4001 26 6 -0.6453 -5.4262 -1.2021 27 8 -0.4002 -4.6312 -2.0847 28 6 -0.1056 -2.7571 0.0026 29 1 -0.4851 0.8400 -0.0004 30 1 2.5622 -4.0320 0.6574 31 1 1.8328 -4.2354 -0.9958 32 1 0.3585 -4.0631 1.7309 33 1 -1.2339 -6.0748 1.8233 34 1 0.0895 -7.0550 1.1266 35 1 -3.3009 -5.8729 0.7494 36 1 -4.9598 -5.2040 1.1676 37 1 -7.2581 -4.4575 1.6263 38 1 -9.1672 -5.8636 0.9704 39 1 -8.7907 -8.0185 -0.1550 40 1 -6.5008 -8.7782 -0.6332 41 1 -0.6621 -7.4874 -1.8203 42 1 -2.2175 -6.6296 -2.0454 43 1 -0.5310 -2.8723 -0.9943 44 1 -0.7187 -2.1400 0.6595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094697139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:16 Heat of formation + Delta-G solvation = 4.455790 kcal Electronic energy + Delta-G solvation = -27580.450469 eV Core-core repulsion = 23691.957483 eV Total energy + Delta-G solvation = -3888.492986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.98240 -40.97492 -39.35190 -38.82611 -37.60806 -35.21316 -34.18770 -32.55792 -31.86218 -31.18745 -29.18422 -28.40258 -26.61577 -25.39365 -24.93321 -23.51264 -22.56601 -22.10009 -21.49931 -19.74876 -19.12970 -18.78279 -18.05152 -17.64013 -17.06080 -16.97113 -16.46854 -16.21316 -15.95602 -15.79575 -15.53824 -15.36055 -15.08327 -14.71657 -14.60451 -14.29749 -14.17101 -14.14946 -13.58357 -13.43687 -13.35197 -13.21772 -12.87132 -12.77542 -12.69744 -12.58233 -12.40303 -12.04915 -11.99711 -11.85575 -11.53065 -11.08269 -11.05948 -10.67112 -10.24698 -9.93829 -9.87796 -9.56744 -8.94234 -7.93185 -5.27363 -0.13180 0.42971 1.42846 1.45484 1.55463 1.59279 1.82273 1.96540 2.05801 2.47915 2.91298 3.25087 3.32176 3.45147 3.47802 3.67501 3.79281 3.84489 3.92467 4.03333 4.20131 4.25570 4.27150 4.48002 4.53188 4.54442 4.61284 4.67075 4.75826 4.80233 4.86406 4.88519 4.92751 5.07125 5.21193 5.22337 5.32266 5.40455 5.46422 5.47525 5.52892 5.85219 5.89466 5.96064 6.24971 6.40477 6.88423 7.09502 7.23752 7.56984 8.52532 9.24123 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002819 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.153501 B = 9930.500701 C =11259.636166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.111 3.889 11 C 0.138 3.862 12 N -0.607 5.607 13 C 0.098 3.902 14 C 0.145 3.855 15 H 0.137 0.863 16 N -0.711 5.711 17 C 0.563 3.437 18 O -0.568 6.568 19 C -0.158 4.158 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.092 4.092 23 C -0.132 4.132 24 C -0.076 4.076 25 C -0.156 4.156 26 C 0.503 3.497 27 O -0.574 6.574 28 C 0.150 3.850 29 H 0.248 0.752 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.410 0.590 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -19.352 7.868 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.102 0.898 9 N -0.362 5.362 10 C -0.015 4.015 11 C 0.034 3.966 12 N -0.341 5.341 13 C -0.024 4.024 14 C 0.039 3.961 15 H 0.155 0.845 16 N -0.363 5.363 17 C 0.352 3.648 18 O -0.449 6.449 19 C -0.161 4.161 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.110 4.110 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.197 4.197 26 C 0.292 3.708 27 O -0.454 6.454 28 C 0.024 3.976 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.248 0.752 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.317 -19.308 7.085 25.059 hybrid contribution 0.398 1.741 -0.562 1.872 sum -13.919 -17.567 6.523 23.342 Atomic orbital electron populations 1.70035 1.06550 1.25565 1.57957 1.25704 0.96649 1.01066 1.02724 0.84950 0.78172 0.79013 0.76792 1.18838 1.22386 1.21084 1.19459 0.90826 0.83175 1.42961 0.89767 1.46158 1.03644 1.00594 1.85845 1.23017 0.96973 0.84129 0.97409 1.23365 0.91519 0.82514 0.99155 1.48556 1.58045 1.19185 1.08267 1.22703 0.98395 0.86720 0.94601 1.21922 0.80508 1.01444 0.92187 0.84525 1.45960 1.05259 1.23991 1.61078 1.18515 0.85422 0.83437 0.77417 1.90746 1.86554 1.24063 1.43508 1.19974 0.92725 0.97876 1.05551 1.21567 0.98918 0.94314 0.96103 1.21492 0.92041 1.01142 1.00496 1.21792 1.00537 0.93599 0.95095 1.21470 0.96749 0.97422 0.99298 1.21408 0.92231 0.99182 0.96695 1.22785 1.02052 0.94859 1.00011 1.21579 0.78343 0.88517 0.82406 1.90758 1.57022 1.50421 1.47151 1.22563 0.87279 0.90696 0.97086 0.94255 0.91315 0.96051 0.84288 0.87152 0.86094 0.75196 0.84433 0.83368 0.82864 0.83071 0.85316 0.84912 0.89348 0.96380 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 11.39 21.65 0.25 -59.29 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.24 -13.86 10.70 84.03 0.90 -12.96 16 8 H 0.08 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.64 -34.59 3.70 -716.64 -2.65 -37.25 16 10 C 0.11 4.73 8.44 86.49 0.73 5.46 16 11 C 0.14 4.93 4.81 46.74 0.22 5.15 16 12 N -0.61 -16.82 3.16 -799.20 -2.53 -19.34 16 13 C 0.10 1.46 6.96 86.83 0.60 2.06 16 14 C 0.14 2.38 3.42 46.05 0.16 2.53 16 15 H 0.14 1.85 7.72 -2.38 -0.02 1.83 16 16 N -0.71 -12.58 5.11 -440.41 -2.25 -14.83 16 17 C 0.56 12.35 7.77 86.79 0.67 13.02 16 18 O -0.57 -15.74 16.09 -3.87 -0.06 -15.80 16 19 C -0.16 -3.08 5.87 -20.09 -0.12 -3.20 16 20 C -0.09 -1.44 9.54 22.53 0.21 -1.23 16 21 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 22 C -0.09 -1.07 10.04 22.33 0.22 -0.85 16 23 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 24 C -0.08 -1.38 9.60 22.53 0.22 -1.16 16 25 C -0.16 -3.60 6.57 30.59 0.20 -3.40 16 26 C 0.50 16.84 7.42 87.85 0.65 17.49 16 27 O -0.57 -26.91 14.64 -3.03 -0.04 -26.95 16 28 C 0.15 7.58 6.90 86.44 0.60 8.17 16 29 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.02 1.01 7.23 -2.39 -0.02 0.99 16 32 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 33 H 0.11 1.19 8.04 -2.39 -0.02 1.17 16 34 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.41 6.29 6.61 -92.70 -0.61 5.68 16 36 H 0.14 1.79 6.41 -2.91 -0.02 1.77 16 37 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.13 2.40 7.65 -2.91 -0.02 2.38 16 41 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 43 H 0.02 1.06 5.75 -2.39 -0.01 1.05 16 44 H 0.04 2.43 7.16 -2.39 -0.02 2.41 16 Total: -1.00 -86.42 366.13 1.35 -85.08 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.42 Total: 14.82 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 6.19 Total: 24.44 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -7.19 Total: -130.70 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.11 Total: -42.76 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -86.42 1.35 -85.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094697139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.531 kcal (2) G-P(sol) polarization free energy of solvation -86.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds