Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39901 * 109.47197 * 2 1 4 4 F 1.39896 * 109.47293 * 240.00010 * 2 1 3 5 5 C 1.50701 * 109.46758 * 119.99921 * 2 1 3 6 6 O 1.21279 * 120.00388 * 25.00212 * 5 2 1 7 7 N 1.34779 * 119.99740 * 205.00019 * 5 2 1 8 8 C 1.47421 * 125.64852 * 359.97120 * 7 5 2 9 9 C 1.54917 * 104.83002 * 155.91133 * 8 7 5 10 10 C 1.55151 * 101.58025 * 37.01304 * 9 8 7 11 11 H 1.09000 * 110.72429 * 82.86540 * 10 9 8 12 12 N 1.46508 * 110.71893 * 206.13557 * 10 9 8 13 13 C 1.35317 * 125.86545 * 33.26260 * 12 10 9 14 14 C 1.35349 * 106.17211 * 179.90573 * 13 12 10 15 15 C 1.50701 * 126.75121 * 180.12578 * 14 13 12 16 16 N 1.46494 * 109.47057 * 95.29453 * 15 14 13 17 17 C 1.36945 * 119.99692 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99838 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99625 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99828 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47184 * 59.99579 * 21 19 17 23 23 H 1.48501 * 109.47341 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47259 * 300.00137 * 21 19 17 25 25 N 1.33772 * 106.49463 * 0.35107 * 14 13 12 26 26 N 1.28634 * 108.88893 * 359.77402 * 25 14 13 27 27 C 1.47021 * 125.64696 * 180.02562 * 7 5 2 28 28 H 1.09005 * 109.47047 * 300.00170 * 1 2 3 29 29 H 1.09005 * 109.47052 * 59.99857 * 1 2 3 30 30 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.36865 * 37.07626 * 8 7 5 32 32 H 1.08994 * 110.46657 * 274.79775 * 8 7 5 33 33 H 1.08998 * 111.00193 * 155.08783 * 9 8 7 34 34 H 1.09004 * 111.00194 * 278.93638 * 9 8 7 35 35 H 1.08000 * 126.91502 * 0.02562 * 13 12 10 36 36 H 1.09001 * 109.46937 * 215.29670 * 15 14 13 37 37 H 1.08995 * 109.47097 * 335.28938 * 15 14 13 38 38 H 0.97000 * 120.00610 * 0.02562 * 16 15 14 39 39 H 0.96996 * 119.99796 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.88310 * 300.43775 * 27 7 5 41 41 H 1.09000 * 109.88323 * 61.60169 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 1.3370 -1.5393 1.7785 7 7 3.2543 -0.4246 1.7220 8 6 4.1995 0.5560 1.1578 9 6 5.1069 0.9612 2.3462 10 6 5.2503 -0.3860 3.1022 11 1 6.0321 -0.9988 2.6534 12 7 5.5214 -0.1565 4.5235 13 6 5.0510 0.8737 5.2641 14 6 5.5418 0.6953 6.5128 15 6 5.3026 1.5783 7.7103 16 7 4.1903 1.0417 8.4983 17 6 3.7895 1.6813 9.6410 18 1 4.2936 2.5810 9.9613 19 6 2.7358 1.1725 10.3879 20 7 2.1218 0.0756 9.9976 21 14 2.1886 2.0452 11.9461 22 1 1.7587 3.4274 11.6144 23 1 1.0529 1.3067 12.5544 24 1 3.3187 2.0959 12.9081 25 7 6.2851 -0.4162 6.4735 26 7 6.2526 -0.8970 5.2809 27 6 3.8657 -1.0398 2.9091 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.6626 1.4248 0.7770 32 1 4.7932 0.1005 0.3653 33 1 6.0754 1.3170 1.9946 34 1 4.6207 1.7103 2.9712 35 1 4.4109 1.6756 4.9272 36 1 6.2022 1.6084 8.3251 37 1 5.0577 2.5862 7.3754 38 1 3.7382 0.2330 8.2112 39 1 1.3858 -0.2801 10.5198 40 1 3.2433 -0.8552 3.7845 41 1 3.9808 -2.1124 2.7530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098592146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = 3.225512 kcal Electronic energy + Delta-G solvation = -28085.825433 eV Core-core repulsion = 23675.342319 eV Total energy + Delta-G solvation = -4410.483114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.84413 -47.81745 -43.11920 -40.56316 -38.40512 -35.12327 -34.13857 -32.15482 -31.96162 -31.08785 -30.01594 -29.47378 -26.20342 -25.83601 -23.63477 -23.28633 -22.76343 -20.94455 -20.88920 -20.57145 -18.65018 -18.40245 -17.80071 -17.29766 -17.00708 -16.43907 -16.27054 -15.87795 -15.04033 -14.92275 -14.66231 -14.52356 -14.42844 -14.13012 -14.00494 -13.68278 -13.47027 -13.24346 -13.17698 -13.08043 -12.89455 -12.86561 -12.62507 -12.40331 -12.27088 -11.96114 -11.50216 -11.27920 -10.90044 -10.79074 -10.57702 -10.49125 -10.12745 -9.94350 -9.73522 -9.41927 -8.92065 -8.86039 -6.91765 -5.72977 -3.03152 1.56909 1.61330 1.81821 2.33537 2.85370 2.99755 3.28905 3.46887 3.51150 3.52581 3.61522 3.66288 3.88257 3.97372 4.18434 4.31075 4.52662 4.63132 4.70716 4.87348 4.95071 5.01631 5.03531 5.10900 5.20338 5.26034 5.27737 5.36306 5.42206 5.47558 5.61953 5.78192 6.16742 6.35745 6.55140 6.62079 6.67839 6.75503 7.14164 7.71106 8.43951 8.76610 9.55626 10.10945 10.46685 11.49586 Molecular weight = 329.14amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002787 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.648311 B =10044.566463 C =11274.246792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.289 3.711 3 F -0.184 7.184 4 F -0.180 7.180 5 C 0.501 3.499 6 O -0.491 6.491 7 N -0.602 5.602 8 C 0.075 3.925 9 C -0.141 4.141 10 C 0.139 3.861 11 H 0.133 0.867 12 N -0.296 5.296 13 C -0.043 4.043 14 C -0.001 4.001 15 C 0.232 3.768 16 N -0.726 5.726 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 N -0.249 5.249 26 N -0.092 5.092 27 C 0.096 3.904 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.187 0.813 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 2.864 -27.851 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.250 3.750 3 F -0.165 7.165 4 F -0.161 7.161 5 C 0.284 3.716 6 O -0.364 6.364 7 N -0.337 5.337 8 C -0.047 4.047 9 C -0.179 4.179 10 C 0.035 3.965 11 H 0.151 0.849 12 N -0.090 5.090 13 C -0.192 4.192 14 C -0.138 4.138 15 C 0.103 3.897 16 N -0.371 5.371 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 N -0.117 5.117 26 N -0.070 5.070 27 C -0.027 4.027 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.568 1.235 -27.384 27.532 hybrid contribution -1.029 1.097 0.433 1.565 sum 1.539 2.332 -26.951 27.096 Atomic orbital electron populations 1.22677 0.88199 1.07130 1.06134 1.21301 0.96029 0.75289 0.82399 1.92935 1.89842 1.37157 1.96538 1.93099 1.90531 1.80721 1.51728 1.20423 0.80989 0.84244 0.85933 1.90851 1.54812 1.32181 1.58549 1.48324 1.15310 1.41114 1.28917 1.23012 0.91411 0.93858 0.96421 1.23294 1.02088 0.95864 0.96686 1.22475 0.98276 0.99242 0.76533 0.84934 1.47088 1.33850 1.18142 1.09885 1.23285 1.06386 0.96978 0.92600 1.22488 0.98895 0.96567 0.95869 1.18957 0.92709 0.91814 0.86201 1.42297 1.36244 1.31515 1.27015 1.19178 1.12049 1.06363 0.99713 0.90925 1.24765 0.98918 0.97772 0.99371 1.69673 1.25391 1.22513 1.40382 0.86232 0.77926 0.78576 0.83209 1.21235 1.21722 1.21170 1.75118 1.18218 1.08902 1.09448 1.78302 1.13231 1.18143 0.97332 1.22378 0.92520 0.98690 0.89132 0.88437 0.88776 0.87837 0.86695 0.89723 0.87552 0.88416 0.79575 0.94262 0.94470 0.78100 0.93428 0.89126 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 8.92 37.16 0.33 -0.81 16 2 C 0.29 2.29 2.22 -27.88 -0.06 2.23 16 3 F -0.18 -1.32 13.75 2.25 0.03 -1.29 16 4 F -0.18 -1.51 17.05 2.25 0.04 -1.48 16 5 C 0.50 5.20 7.29 -10.98 -0.08 5.12 16 6 O -0.49 -6.76 16.42 5.56 0.09 -6.67 16 7 N -0.60 -5.31 3.33 -170.52 -0.57 -5.88 16 8 C 0.08 0.41 6.53 -2.53 -0.02 0.40 16 9 C -0.14 -0.78 6.48 -24.58 -0.16 -0.94 16 10 C 0.14 1.17 3.98 -66.09 -0.26 0.91 16 11 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 12 N -0.30 -3.91 3.28 -52.98 -0.17 -4.08 16 13 C -0.04 -0.62 10.59 -17.05 -0.18 -0.80 16 14 C 0.00 -0.01 6.62 -82.78 -0.55 -0.56 16 15 C 0.23 4.84 6.82 -5.20 -0.04 4.81 16 16 N -0.73 -19.04 5.59 -61.09 -0.34 -19.39 16 17 C -0.24 -6.85 9.99 -15.05 -0.15 -7.00 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 N -0.25 -5.00 12.41 33.29 0.41 -4.58 16 26 N -0.09 -1.57 13.16 60.35 0.79 -0.77 16 27 C 0.10 0.95 6.62 -3.06 -0.02 0.93 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.12 0.58 5.31 -51.93 -0.28 0.31 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.58 6.39 -51.93 -0.33 0.25 16 35 H 0.19 2.11 7.00 -52.49 -0.37 1.74 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 10.95 7.66 -40.82 -0.31 10.64 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -36.08 354.01 -5.00 -41.08 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.04 Total: 4.50 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.28 Total: 3.84 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.85 Total: -62.89 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.09 Total: -6.67 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.08 -5.00 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098592146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.304 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds