Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 H 1.09002 * 109.47750 * 305.58834 * 3 2 1 5 5 S 1.81407 * 109.47174 * 65.58443 * 3 2 1 6 6 C 1.81396 * 103.00104 * 187.17221 * 5 3 2 7 7 C 1.50702 * 109.47377 * 185.58519 * 3 2 1 8 8 O 1.21289 * 119.99722 * 265.00222 * 7 3 2 9 9 N 1.34773 * 119.99916 * 85.00269 * 7 3 2 10 10 C 1.47071 * 120.88218 * 359.72273 * 9 7 3 11 11 C 1.53695 * 108.27798 * 128.75870 * 10 9 7 12 12 N 1.46894 * 109.25838 * 54.08070 * 11 10 9 13 13 C 1.46897 * 111.00103 * 172.61043 * 12 11 10 14 14 C 1.50701 * 109.46941 * 294.30122 * 13 12 11 15 15 O 1.21286 * 120.00347 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99966 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00007 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99966 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99782 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46913 * 89.99576 * 21 19 17 23 23 H 1.48491 * 109.47179 * 209.99797 * 21 19 17 24 24 H 1.48498 * 109.46840 * 329.99839 * 21 19 17 25 25 C 1.46897 * 111.26986 * 296.76230 * 12 11 10 26 26 C 1.47084 * 120.87825 * 180.02562 * 9 7 3 27 27 H 1.09007 * 109.46809 * 174.42950 * 1 2 3 28 28 H 1.08996 * 109.47056 * 294.43309 * 1 2 3 29 29 H 1.09000 * 109.47105 * 54.43418 * 1 2 3 30 30 H 1.08997 * 109.47297 * 240.00330 * 2 1 3 31 31 H 1.08999 * 109.47213 * 120.00100 * 2 1 3 32 32 H 1.09009 * 109.46978 * 173.78228 * 6 5 3 33 33 H 1.08994 * 109.47395 * 293.77990 * 6 5 3 34 34 H 1.08997 * 109.47077 * 53.78627 * 6 5 3 35 35 H 1.09000 * 109.63143 * 248.52672 * 10 9 7 36 36 H 1.09001 * 109.62892 * 9.10232 * 10 9 7 37 37 H 1.09005 * 109.64720 * 294.07696 * 11 10 9 38 38 H 1.09001 * 109.42236 * 173.95080 * 11 10 9 39 39 H 1.08995 * 109.47503 * 54.30215 * 13 12 11 40 40 H 1.08999 * 109.47144 * 174.30208 * 13 12 11 41 41 H 0.97005 * 119.99429 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00261 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.49126 * 303.13927 * 25 12 11 44 44 H 1.09005 * 109.49560 * 183.06535 * 25 12 11 45 45 H 1.08997 * 109.62871 * 350.89123 * 26 9 7 46 46 H 1.09004 * 109.62920 * 111.47551 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9845 -0.8357 5 16 1.5750 2.2482 1.5574 6 6 2.0599 3.9747 1.2842 7 6 3.5406 1.4448 -0.1383 8 8 4.2406 1.5032 0.8505 9 7 4.1048 1.3819 -1.3606 10 6 3.2746 1.3044 -2.5721 11 6 3.7441 2.3943 -3.5488 12 7 5.1884 2.2517 -3.7761 13 6 5.6469 3.1604 -4.8353 14 6 5.0281 2.7544 -6.1481 15 8 4.2792 1.8016 -6.1966 16 7 5.3076 3.4496 -7.2684 17 6 4.7443 3.0806 -8.4626 18 1 4.0768 2.2326 -8.5056 19 6 5.0321 3.7976 -9.6175 20 7 5.8438 4.8296 -9.5650 21 14 4.2651 3.2944 -11.2448 22 1 2.9731 4.0045 -11.4236 23 1 5.1835 3.6504 -12.3560 24 1 4.0288 1.8283 -11.2482 25 6 5.9465 2.4637 -2.5359 26 6 5.5672 1.3824 -1.5180 27 1 -0.3633 -1.0229 -0.0998 28 1 -0.3633 0.4251 0.9356 29 1 -0.3633 0.5977 -0.8360 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7242 4.5836 2.1238 33 1 3.1447 4.0385 1.2000 34 1 1.6020 4.3396 0.3648 35 1 3.3885 0.3227 -3.0319 36 1 2.2294 1.4703 -2.3110 37 1 3.5377 3.3780 -3.1271 38 1 3.2144 2.2855 -4.4952 39 1 5.3488 4.1804 -4.5932 40 1 6.7328 3.1082 -4.9139 41 1 5.9068 4.2114 -7.2296 42 1 6.0450 5.3300 -10.3713 43 1 5.7094 3.4465 -2.1282 44 1 7.0141 2.4054 -2.7476 45 1 6.0385 1.6001 -0.5596 46 1 5.8970 0.4080 -1.8786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112767828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = -57.174955 kcal Electronic energy + Delta-G solvation = -26632.831628 eV Core-core repulsion = 22877.110083 eV Total energy + Delta-G solvation = -3755.721545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44601 -38.76185 -37.32316 -35.18511 -34.43882 -33.79335 -31.34306 -31.23223 -29.48400 -28.98465 -27.88133 -25.67791 -23.94215 -23.76124 -22.46877 -21.19426 -19.38613 -19.11227 -17.97787 -17.63993 -16.74057 -16.17483 -15.72727 -15.67381 -15.19657 -15.03687 -14.88892 -14.60762 -14.23303 -14.15179 -13.92622 -13.78616 -13.69131 -13.61362 -13.16591 -12.83669 -12.59638 -12.37276 -12.25382 -12.02971 -11.70555 -11.58800 -11.54680 -11.34713 -11.33122 -11.20870 -11.18353 -10.90093 -10.44024 -10.27894 -10.23045 -9.87144 -9.54159 -8.95498 -8.45784 -8.06035 -7.97281 -7.82469 -6.47911 -3.89039 1.29446 2.14479 2.45398 2.86659 3.12975 3.22512 3.27881 3.80070 3.85669 4.12755 4.16728 4.39770 4.55129 4.79472 4.88852 4.89999 4.95705 4.97813 4.98661 5.06353 5.17091 5.18082 5.26791 5.33153 5.39774 5.41120 5.50569 5.63627 5.65294 5.71877 5.75101 5.77431 5.82001 5.97755 6.03561 6.07811 6.18161 6.36852 7.03396 7.20838 7.25927 7.49173 7.95383 7.99388 8.54286 9.11354 9.47191 9.98071 10.69679 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002501 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.718894 B =11191.493668 C =11669.010765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.087 4.087 4 H 0.109 0.891 5 S -0.199 6.199 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.525 6.525 9 N -0.607 5.607 10 C 0.111 3.889 11 C 0.039 3.961 12 N -0.514 5.514 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.579 6.579 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.104 0.896 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C 0.041 3.959 26 C 0.119 3.881 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.117 0.883 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.034 0.966 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 -2.924 18.226 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.219 4.219 4 H 0.127 0.873 5 S 0.028 5.972 6 C -0.299 4.299 7 C 0.296 3.704 8 O -0.401 6.401 9 N -0.341 5.341 10 C -0.012 4.012 11 C -0.090 4.090 12 N -0.238 5.238 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.464 6.464 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.088 4.088 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.135 0.865 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.355 -4.305 19.323 20.792 hybrid contribution 0.612 1.861 -1.870 2.708 sum -5.743 -2.444 17.453 18.535 Atomic orbital electron populations 1.21828 0.93868 1.02257 1.02977 1.21286 0.97414 0.91165 1.03815 1.23692 0.95614 1.02515 1.00056 0.87343 1.86620 1.80108 1.06787 1.23711 1.23458 1.05120 0.95582 1.05753 1.20478 0.90114 0.76703 0.83096 1.90726 1.63300 1.49379 1.36662 1.48230 1.07578 1.72443 1.05828 1.22107 0.93949 1.01120 0.84009 1.22731 0.89519 0.95560 1.01146 1.61491 1.03644 1.53179 1.05510 1.21857 1.00805 0.94043 0.91783 1.19690 0.86522 0.86179 0.84812 1.90471 1.40176 1.29925 1.85787 1.41880 1.42616 1.28643 1.06712 1.19692 1.25398 1.13864 0.83984 0.87852 1.25271 0.96966 0.95791 0.99858 1.69606 1.35429 1.18953 1.30221 0.85859 0.78574 0.79152 0.80729 1.20403 1.20901 1.19357 1.22517 0.99179 0.96975 0.90135 1.21736 0.79444 0.99753 0.99445 0.91994 0.91434 0.92205 0.90017 0.90355 0.87911 0.90343 0.90542 0.89613 0.89756 0.95600 0.86494 0.93475 0.89126 0.77482 0.91806 0.94817 0.89378 0.88830 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.65 37.16 0.36 -0.76 16 2 C -0.10 -0.87 5.34 -26.73 -0.14 -1.01 16 3 C -0.09 -0.89 1.78 -27.89 -0.05 -0.94 16 4 H 0.11 0.98 6.23 -51.92 -0.32 0.66 16 5 S -0.20 -2.16 20.03 -107.50 -2.15 -4.31 16 6 C -0.13 -1.20 10.59 101.05 1.07 -0.13 16 7 C 0.51 6.49 6.66 -10.99 -0.07 6.41 16 8 O -0.52 -8.23 15.59 5.55 0.09 -8.15 16 9 N -0.61 -7.36 3.00 -172.16 -0.52 -7.87 16 10 C 0.11 1.30 6.22 -3.37 -0.02 1.28 16 11 C 0.04 0.56 5.27 -3.47 -0.02 0.54 16 12 N -0.51 -7.85 4.37 -235.45 -1.03 -8.88 16 13 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 14 C 0.44 9.80 7.44 -10.98 -0.08 9.72 16 15 O -0.58 -14.49 13.91 5.55 0.08 -14.41 16 16 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 17 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 18 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 21 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.04 0.50 5.62 -3.69 -0.02 0.48 16 26 C 0.12 1.42 6.60 -3.58 -0.02 1.40 16 27 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.53 7.36 -51.93 -0.38 0.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.80 5.46 -51.93 -0.28 0.51 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.12 2.04 5.77 -51.93 -0.30 1.74 16 39 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.09 1.37 7.97 -51.93 -0.41 0.95 16 41 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.09 0.96 7.99 -51.93 -0.41 0.55 16 45 H 0.09 1.13 7.06 -51.93 -0.37 0.76 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -31.26 380.52 -8.80 -40.06 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.37 Total: 9.21 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 0.73 Total: 10.05 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.88 Total: -53.62 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.16 Total: -22.56 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.15 Total: -4.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.26 -8.80 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112767828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.113 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds