Wall clock time and date at job start Tue Mar 31 2020 04:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48502 * 109.47131 * 274.98160 * 3 2 1 5 5 H 1.48501 * 109.47153 * 34.97663 * 3 2 1 6 6 H 1.48492 * 109.47467 * 154.98074 * 3 2 1 7 7 C 1.38817 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99462 * 189.09931 * 7 2 1 9 9 N 1.36935 * 119.99831 * 9.10034 * 7 2 1 10 10 C 1.48145 * 127.84282 * 15.58440 * 9 7 2 11 11 C 1.54381 * 104.62026 * 140.38762 * 10 9 7 12 12 H 1.09003 * 117.62170 * 242.76818 * 11 10 9 13 13 C 1.54283 * 104.96158 * 23.86874 * 11 10 9 14 14 H 1.09003 * 121.81891 * 222.17477 * 13 11 10 15 15 C 1.48149 * 127.83674 * 195.55157 * 9 7 2 16 16 C 1.52997 * 59.72349 * 114.13942 * 13 11 10 17 17 H 1.09001 * 117.44313 * 252.35421 * 16 13 11 18 18 N 1.46500 * 117.40898 * 107.66789 * 16 13 11 19 19 C 1.34776 * 119.99887 * 135.77350 * 18 16 13 20 20 O 1.21274 * 120.00201 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99630 * 180.02562 * 19 18 16 22 22 N 1.46504 * 109.47294 * 179.97438 * 21 19 18 23 23 C 1.34769 * 119.99995 * 179.97438 * 22 21 19 24 24 O 1.21552 * 120.00523 * 359.97438 * 23 22 21 25 25 C 1.47852 * 120.00022 * 180.02562 * 23 22 21 26 26 C 1.39575 * 120.13903 * 359.71693 * 25 23 22 27 27 C 1.37963 * 119.85001 * 179.79128 * 26 25 23 28 28 C 1.38357 * 120.14291 * 0.49022 * 27 26 25 29 29 C 1.38355 * 120.29703 * 359.74428 * 28 27 26 30 30 C 1.37958 * 120.14236 * 0.02562 * 29 28 27 31 31 H 0.97003 * 119.99745 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.40706 * 21.60428 * 10 9 7 33 33 H 1.08998 * 110.40721 * 259.18030 * 10 9 7 34 34 H 1.08999 * 110.40322 * 100.82369 * 15 9 7 35 35 H 1.09001 * 110.40330 * 338.39506 * 15 9 7 36 36 H 0.97004 * 119.99367 * 315.77422 * 18 16 13 37 37 H 1.09003 * 109.47083 * 300.00051 * 21 19 18 38 38 H 1.09000 * 109.47588 * 59.99520 * 21 19 18 39 39 H 0.96999 * 119.99514 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.07825 * 0.02562 * 26 25 23 41 41 H 1.08000 * 119.92604 * 180.23550 * 27 26 25 42 42 H 1.08004 * 119.85198 * 179.76098 * 28 27 26 43 43 H 1.07998 * 119.93016 * 179.97438 * 29 28 27 44 44 H 1.07997 * 120.07568 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3383 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7104 11 6 0.0639 -3.8170 -1.6167 12 1 -0.1481 -3.6878 -2.6781 13 6 1.2862 -4.5974 -1.0900 14 1 2.0098 -5.0554 -1.7643 15 6 1.8195 -3.7546 0.0885 16 6 -0.1182 -5.1931 -0.9732 17 1 -0.5682 -5.2280 0.0190 18 7 -0.4514 -6.3130 -1.8569 19 6 -1.1019 -7.3872 -1.3675 20 8 -1.4111 -7.4268 -0.1955 21 6 -1.4441 -8.5394 -2.2765 22 7 -2.1432 -9.5745 -1.5109 23 6 -2.5494 -10.7053 -2.1213 24 8 -2.3361 -10.8664 -3.3071 25 6 -3.2554 -11.7497 -1.3488 26 6 -3.4976 -11.5701 0.0140 27 6 -4.1608 -12.5466 0.7282 28 6 -4.5765 -13.7064 0.0985 29 6 -4.3353 -13.8928 -1.2510 30 6 -3.6774 -12.9221 -1.9777 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3434 -1.7020 -1.2912 33 1 -0.7319 -2.7501 0.1078 34 1 1.4114 -4.1185 1.0314 35 1 2.9090 -3.7784 0.1104 36 1 -0.2037 -6.2814 -2.7943 37 1 -2.0869 -8.1872 -3.0834 38 1 -0.5283 -8.9551 -2.6968 39 1 -2.3144 -9.4455 -0.5649 40 1 -3.1700 -10.6670 0.5076 41 1 -4.3522 -12.4072 1.7819 42 1 -5.0919 -14.4694 0.6630 43 1 -4.6620 -14.8006 -1.7364 44 1 -3.4893 -13.0690 -3.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115161766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:02 Heat of formation + Delta-G solvation = 21.045814 kcal Electronic energy + Delta-G solvation = -26078.300087 eV Core-core repulsion = 22190.526498 eV Total energy + Delta-G solvation = -3887.773589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71016 -39.89480 -38.71423 -38.24307 -34.92841 -34.55014 -32.80279 -31.80301 -31.34386 -30.41300 -28.14058 -27.20844 -25.61905 -24.05378 -22.90204 -21.99954 -20.80175 -20.75016 -20.30716 -19.36848 -18.76594 -17.03612 -17.00922 -16.71849 -16.21610 -16.11930 -15.95537 -15.24255 -14.85520 -14.83794 -14.71619 -14.16331 -13.92896 -13.65872 -13.46714 -13.27400 -13.19575 -12.81266 -12.69928 -12.29270 -12.09909 -11.62395 -11.57134 -11.51895 -11.04552 -10.87155 -10.47155 -10.36326 -10.29542 -10.20860 -10.08059 -9.78156 -9.60754 -9.42572 -9.32398 -9.27288 -8.79221 -8.45994 -6.91673 -5.83787 -3.18327 0.43969 0.93934 2.34176 2.48400 2.51594 3.16157 3.36062 3.41517 3.43663 3.48241 4.21000 4.26340 4.38127 4.42964 4.47434 4.51538 4.71255 4.94048 5.00065 5.02091 5.06259 5.07932 5.28863 5.32399 5.37449 5.50287 5.55079 5.76565 5.83208 5.86400 5.91191 5.95750 6.01281 6.03888 6.14512 6.44038 6.45971 6.63582 6.66602 6.83615 7.12922 7.28327 7.35351 7.48236 7.67297 7.82516 7.99813 8.15983 9.06754 9.69413 10.45785 11.30601 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.036558 B = 0.001727 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.722833 B =16211.944946 C =16547.654980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.178 4.178 12 H 0.104 0.896 13 C -0.181 4.181 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.093 3.907 17 H 0.133 0.867 18 N -0.690 5.690 19 C 0.511 3.489 20 O -0.537 6.537 21 C 0.100 3.900 22 N -0.713 5.713 23 C 0.562 3.438 24 O -0.539 6.539 25 C -0.135 4.135 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.094 4.094 29 C -0.130 4.130 30 C -0.060 4.060 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.403 0.597 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.413 0.587 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 -25.966 -3.511 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.199 4.199 12 H 0.122 0.878 13 C -0.203 4.203 14 H 0.122 0.878 15 C 0.029 3.971 16 C -0.013 4.013 17 H 0.150 0.850 18 N -0.338 5.338 19 C 0.297 3.703 20 O -0.414 6.414 21 C -0.027 4.027 22 N -0.368 5.368 23 C 0.349 3.651 24 O -0.417 6.417 25 C -0.138 4.138 26 C -0.103 4.103 27 C -0.145 4.145 28 C -0.112 4.112 29 C -0.148 4.148 30 C -0.078 4.078 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.992 -25.778 -3.460 27.209 hybrid contribution 0.517 0.970 -0.157 1.111 sum -7.475 -24.807 -3.617 26.161 Atomic orbital electron populations 1.69896 1.05069 1.25478 1.55661 1.24911 0.95663 0.98029 1.01645 0.86073 0.78743 0.83230 0.77542 1.21533 1.21643 1.20459 1.19017 0.90858 0.82254 1.43486 0.90451 1.45178 1.13310 1.00000 1.73108 1.21077 0.87002 0.92424 0.93675 1.24672 1.02181 0.92392 1.00680 0.87757 1.24384 0.90397 1.02331 1.03140 0.87823 1.21121 0.97288 0.85822 0.92906 1.21903 0.98823 0.84848 0.95684 0.84963 1.45269 1.57783 1.17664 1.13106 1.20389 0.77798 0.83451 0.88681 1.90703 1.53566 1.80019 1.17141 1.21084 0.99595 0.87723 0.94288 1.45609 1.58994 1.17632 1.14608 1.18257 0.78493 0.81438 0.86873 1.90780 1.56582 1.79101 1.15216 1.19877 1.03530 0.96127 0.94248 1.21436 0.96613 0.99242 0.92961 1.21163 0.98902 0.93951 1.00479 1.21422 0.97724 0.97238 0.94865 1.21183 0.99708 0.99474 0.94432 1.21299 0.94346 0.91545 1.00651 0.93503 0.88977 0.95589 0.95444 0.92924 0.76294 0.87974 0.88021 0.74799 0.85226 0.85166 0.85489 0.85237 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.44 10.86 55.49 0.60 -25.84 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.26 10.35 -15.06 -0.16 -6.41 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -14.90 3.38 -168.86 -0.57 -15.47 16 10 C 0.18 4.32 5.70 -2.41 -0.01 4.30 16 11 C -0.18 -3.19 7.06 -89.22 -0.63 -3.82 16 12 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 13 C -0.18 -3.08 7.06 -89.22 -0.63 -3.71 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.16 3.20 7.04 -2.41 -0.02 3.18 16 16 C 0.09 1.47 5.98 -67.93 -0.41 1.06 16 17 H 0.13 2.38 7.40 -51.93 -0.38 2.00 16 18 N -0.69 -8.21 5.56 -53.81 -0.30 -8.51 16 19 C 0.51 6.22 7.90 -10.99 -0.09 6.13 16 20 O -0.54 -8.35 15.23 5.56 0.08 -8.26 16 21 C 0.10 0.96 6.15 -5.19 -0.03 0.93 16 22 N -0.71 -7.27 5.48 -62.43 -0.34 -7.62 16 23 C 0.56 6.31 7.77 -12.33 -0.10 6.21 16 24 O -0.54 -7.48 16.35 5.32 0.09 -7.39 16 25 C -0.13 -1.28 5.87 -104.97 -0.62 -1.89 16 26 C -0.08 -0.66 9.54 -39.18 -0.37 -1.03 16 27 C -0.13 -0.83 10.03 -39.64 -0.40 -1.22 16 28 C -0.09 -0.56 10.04 -39.49 -0.40 -0.96 16 29 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 30 C -0.06 -0.51 9.60 -39.19 -0.38 -0.88 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.09 2.41 6.51 -51.92 -0.34 2.07 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 3.61 8.83 -40.82 -0.36 3.25 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.41 4.03 5.47 -40.82 -0.22 3.81 16 40 H 0.13 0.88 6.41 -52.48 -0.34 0.54 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -33.61 372.86 -10.38 -43.99 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.82 Total: 6.44 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -4.72 Total: 0.41 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.61 Total: -57.44 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.17 Total: -15.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.61 -10.38 -43.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115161766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.039 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds