Wall clock time and date at job start Tue Mar 31 2020 04:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48502 * 109.47131 * 274.98160 * 3 2 1 5 5 H 1.48501 * 109.47153 * 34.97663 * 3 2 1 6 6 H 1.48492 * 109.47467 * 154.98074 * 3 2 1 7 7 C 1.38817 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99462 * 189.09931 * 7 2 1 9 9 N 1.36935 * 119.99831 * 9.10034 * 7 2 1 10 10 C 1.48145 * 127.84282 * 15.58440 * 9 7 2 11 11 C 1.54381 * 104.62026 * 140.38762 * 10 9 7 12 12 H 1.09003 * 117.62170 * 242.76818 * 11 10 9 13 13 C 1.54283 * 104.96158 * 23.86874 * 11 10 9 14 14 H 1.09003 * 121.81891 * 222.17477 * 13 11 10 15 15 C 1.48149 * 127.83674 * 195.55157 * 9 7 2 16 16 C 1.52997 * 59.72349 * 114.13942 * 13 11 10 17 17 H 1.09001 * 117.44313 * 252.35421 * 16 13 11 18 18 N 1.46500 * 117.40898 * 107.66789 * 16 13 11 19 19 C 1.34776 * 119.99887 * 135.77350 * 18 16 13 20 20 O 1.21274 * 120.00201 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99630 * 180.02562 * 19 18 16 22 22 N 1.46504 * 109.47294 * 179.97438 * 21 19 18 23 23 C 1.34769 * 119.99995 * 179.97438 * 22 21 19 24 24 O 1.21552 * 120.00523 * 359.97438 * 23 22 21 25 25 C 1.47852 * 120.00022 * 180.02562 * 23 22 21 26 26 C 1.39575 * 120.13903 * 359.71693 * 25 23 22 27 27 C 1.37963 * 119.85001 * 179.79128 * 26 25 23 28 28 C 1.38357 * 120.14291 * 0.49022 * 27 26 25 29 29 C 1.38355 * 120.29703 * 359.74428 * 28 27 26 30 30 C 1.37958 * 120.14236 * 0.02562 * 29 28 27 31 31 H 0.97003 * 119.99745 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.40706 * 21.60428 * 10 9 7 33 33 H 1.08998 * 110.40721 * 259.18030 * 10 9 7 34 34 H 1.08999 * 110.40322 * 100.82369 * 15 9 7 35 35 H 1.09001 * 110.40330 * 338.39506 * 15 9 7 36 36 H 0.97004 * 119.99367 * 315.77422 * 18 16 13 37 37 H 1.09003 * 109.47083 * 300.00051 * 21 19 18 38 38 H 1.09000 * 109.47588 * 59.99520 * 21 19 18 39 39 H 0.96999 * 119.99514 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.07825 * 0.02562 * 26 25 23 41 41 H 1.08000 * 119.92604 * 180.23550 * 27 26 25 42 42 H 1.08004 * 119.85198 * 179.76098 * 28 27 26 43 43 H 1.07998 * 119.93016 * 179.97438 * 29 28 27 44 44 H 1.07997 * 120.07568 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3383 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7104 11 6 0.0639 -3.8170 -1.6167 12 1 -0.1481 -3.6878 -2.6781 13 6 1.2862 -4.5974 -1.0900 14 1 2.0098 -5.0554 -1.7643 15 6 1.8195 -3.7546 0.0885 16 6 -0.1182 -5.1931 -0.9732 17 1 -0.5682 -5.2280 0.0190 18 7 -0.4514 -6.3130 -1.8569 19 6 -1.1019 -7.3872 -1.3675 20 8 -1.4111 -7.4268 -0.1955 21 6 -1.4441 -8.5394 -2.2765 22 7 -2.1432 -9.5745 -1.5109 23 6 -2.5494 -10.7053 -2.1213 24 8 -2.3361 -10.8664 -3.3071 25 6 -3.2554 -11.7497 -1.3488 26 6 -3.4976 -11.5701 0.0140 27 6 -4.1608 -12.5466 0.7282 28 6 -4.5765 -13.7064 0.0985 29 6 -4.3353 -13.8928 -1.2510 30 6 -3.6774 -12.9221 -1.9777 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3434 -1.7020 -1.2912 33 1 -0.7319 -2.7501 0.1078 34 1 1.4114 -4.1185 1.0314 35 1 2.9090 -3.7784 0.1104 36 1 -0.2037 -6.2814 -2.7943 37 1 -2.0869 -8.1872 -3.0834 38 1 -0.5283 -8.9551 -2.6968 39 1 -2.3144 -9.4455 -0.5649 40 1 -3.1700 -10.6670 0.5076 41 1 -4.3522 -12.4072 1.7819 42 1 -5.0919 -14.4694 0.6630 43 1 -4.6620 -14.8006 -1.7364 44 1 -3.4893 -13.0690 -3.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115161766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:02 Heat of formation + Delta-G solvation = -1.838479 kcal Electronic energy + Delta-G solvation = -26079.292425 eV Core-core repulsion = 22190.526498 eV Total energy + Delta-G solvation = -3888.765926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59398 -40.94615 -39.90525 -39.11722 -36.20840 -35.65504 -34.42370 -32.53720 -32.07719 -31.86704 -29.11700 -28.90873 -27.43602 -24.79252 -23.66730 -23.29901 -21.99016 -21.70926 -21.55527 -20.90367 -19.55047 -18.87102 -17.96877 -17.77516 -17.12263 -17.00114 -16.82122 -16.66248 -16.00044 -15.78553 -15.53832 -15.42926 -15.07526 -14.81047 -14.64647 -14.49932 -14.10218 -14.00630 -13.77878 -13.44430 -13.35344 -13.19322 -12.91058 -12.72890 -12.61873 -12.14533 -12.03043 -12.02425 -11.89285 -11.68552 -11.24790 -11.19233 -10.85837 -10.69986 -10.41701 -9.95755 -9.91735 -9.77155 -8.93279 -7.92798 -5.29550 -0.16502 0.41189 1.33659 1.46882 1.48112 1.55681 1.58139 1.78306 2.24767 2.48106 2.82068 2.89210 3.26537 3.41566 3.60935 3.67031 3.80646 3.90789 3.91108 4.02003 4.13243 4.24923 4.27774 4.31565 4.37832 4.46686 4.51287 4.53129 4.76364 4.85602 4.88333 4.98821 5.05837 5.11937 5.26938 5.33403 5.38313 5.43601 5.44816 5.51166 5.51281 5.64043 5.94430 6.16000 6.32114 6.37245 6.99640 7.00255 7.03647 7.66470 8.44450 9.21109 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.036558 B = 0.001727 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.722833 B =16211.944946 C =16547.654980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.179 4.179 12 H 0.129 0.871 13 C -0.165 4.165 14 H 0.137 0.863 15 C 0.148 3.852 16 C 0.118 3.882 17 H 0.109 0.891 18 N -0.676 5.676 19 C 0.516 3.484 20 O -0.572 6.572 21 C 0.107 3.893 22 N -0.712 5.712 23 C 0.561 3.439 24 O -0.572 6.572 25 C -0.158 4.158 26 C -0.091 4.091 27 C -0.131 4.131 28 C -0.090 4.090 29 C -0.130 4.130 30 C -0.075 4.075 31 H 0.250 0.750 32 H 0.059 0.941 33 H -0.004 1.004 34 H 0.020 0.980 35 H 0.063 0.937 36 H 0.422 0.578 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.415 0.585 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 -28.087 -4.066 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.200 4.200 12 H 0.146 0.854 13 C -0.186 4.186 14 H 0.155 0.845 15 C 0.022 3.978 16 C 0.011 3.989 17 H 0.127 0.873 18 N -0.326 5.326 19 C 0.304 3.696 20 O -0.451 6.451 21 C -0.020 4.020 22 N -0.367 5.367 23 C 0.350 3.650 24 O -0.453 6.453 25 C -0.161 4.161 26 C -0.110 4.110 27 C -0.149 4.149 28 C -0.108 4.108 29 C -0.148 4.148 30 C -0.094 4.094 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.014 0.986 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.254 0.746 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.568 -27.933 -4.033 29.220 hybrid contribution 0.342 1.534 0.119 1.576 sum -7.227 -26.400 -3.914 27.649 Atomic orbital electron populations 1.70096 1.06564 1.25776 1.57123 1.25760 0.96500 1.01350 1.02014 0.85019 0.77857 0.78808 0.77378 1.21175 1.22204 1.19068 1.19410 0.91414 0.83485 1.42648 0.89939 1.45484 1.13799 1.01147 1.73710 1.20809 0.86030 0.93823 0.93208 1.24341 1.03840 0.91034 1.00754 0.85356 1.24284 0.91022 1.01658 1.01611 0.84539 1.21259 0.98004 0.84379 0.94127 1.21396 0.97591 0.84830 0.95070 0.87303 1.45028 1.57599 1.16366 1.13585 1.20793 0.76732 0.83703 0.88418 1.90702 1.54802 1.80682 1.18899 1.21136 1.00719 0.86509 0.93648 1.45641 1.58711 1.17549 1.14750 1.18551 0.78085 0.81736 0.86581 1.90751 1.58165 1.79819 1.16528 1.19885 1.04937 0.96288 0.94970 1.21570 0.96952 1.00011 0.92458 1.21496 0.98157 0.93720 1.01537 1.21817 0.96694 0.97503 0.94749 1.21484 0.98815 0.99686 0.94831 1.21407 0.95244 0.92052 1.00690 0.94087 0.92300 0.98562 0.96261 0.91869 0.74002 0.86421 0.86187 0.74578 0.84757 0.83053 0.82589 0.82911 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.74 10.86 21.65 0.24 -56.51 16 2 C -0.06 -3.52 5.40 84.86 0.46 -3.07 16 3 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.24 -13.39 10.35 84.04 0.87 -12.52 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 9 N -0.62 -31.58 3.38 -688.15 -2.33 -33.90 16 10 C 0.19 9.08 5.70 86.53 0.49 9.57 16 11 C -0.18 -6.24 7.06 -9.89 -0.07 -6.31 16 12 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 13 C -0.16 -5.26 7.06 -9.89 -0.07 -5.33 16 14 H 0.14 3.55 8.14 -2.39 -0.02 3.53 16 15 C 0.15 6.03 7.04 86.53 0.61 6.64 16 16 C 0.12 3.56 5.98 44.99 0.27 3.83 16 17 H 0.11 3.92 7.40 -2.39 -0.02 3.91 16 18 N -0.68 -14.37 5.56 -442.54 -2.46 -16.83 16 19 C 0.52 11.62 7.90 87.66 0.69 12.32 16 20 O -0.57 -17.31 15.23 -3.01 -0.05 -17.35 16 21 C 0.11 1.83 6.15 85.63 0.53 2.35 16 22 N -0.71 -13.89 5.48 -469.70 -2.57 -16.46 16 23 C 0.56 12.44 7.77 86.79 0.67 13.11 16 24 O -0.57 -15.78 16.35 -3.88 -0.06 -15.85 16 25 C -0.16 -2.94 5.87 -20.09 -0.12 -3.06 16 26 C -0.09 -1.35 9.54 22.53 0.21 -1.14 16 27 C -0.13 -1.44 10.03 22.23 0.22 -1.21 16 28 C -0.09 -0.82 10.04 22.33 0.22 -0.60 16 29 C -0.13 -1.45 10.03 22.23 0.22 -1.23 16 30 C -0.07 -1.24 9.60 22.53 0.22 -1.03 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.06 3.22 6.51 -2.38 -0.02 3.21 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.42 6.01 8.83 -92.71 -0.82 5.20 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 7.87 5.47 -92.71 -0.51 7.36 16 40 H 0.13 1.74 6.41 -2.91 -0.02 1.72 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 43 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.13 2.22 7.65 -2.91 -0.02 2.20 16 Total: -1.00 -75.62 372.86 -0.05 -75.66 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.28 Total: 21.78 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.44 Total: 12.34 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -7.12 Total: -123.70 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.11 Total: -33.20 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.62 -0.05 -75.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115161766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.825 kcal (2) G-P(sol) polarization free energy of solvation -75.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds