Wall clock time and date at job start Tue Mar 31 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47408 * 240.00418 * 3 2 1 5 5 H 1.48500 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47024 * 120.00416 * 3 2 1 7 7 C 1.38805 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99668 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99983 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47080 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99983 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99947 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00081 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47075 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.46994 * 179.97438 * 15 14 13 17 17 C 1.46900 * 111.00274 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47417 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00190 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00270 * 180.02562 * 18 17 16 21 21 C 1.46504 * 120.00207 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46983 * 179.97438 * 21 20 18 23 23 C 1.53786 * 113.61503 * 85.86203 * 22 21 20 24 24 C 1.54049 * 86.98426 * 140.01654 * 23 22 21 25 25 C 1.53781 * 113.61337 * 183.46996 * 22 21 20 26 26 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47267 * 60.00096 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99767 * 10 9 7 29 29 H 0.97006 * 120.00220 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47043 * 59.99528 * 14 13 11 31 31 H 1.08996 * 109.46825 * 299.99450 * 14 13 11 32 32 H 1.09000 * 109.47292 * 60.00022 * 15 14 13 33 33 H 1.08996 * 109.47124 * 299.99608 * 15 14 13 34 34 H 1.00896 * 111.00108 * 303.95353 * 16 15 14 35 35 H 1.09000 * 109.46779 * 60.00138 * 17 16 15 36 36 H 1.08994 * 109.47117 * 300.00753 * 17 16 15 37 37 H 0.96999 * 120.00146 * 359.97438 * 20 18 17 38 38 H 1.09000 * 109.47232 * 59.99775 * 21 20 18 39 39 H 1.08997 * 109.47041 * 299.99591 * 21 20 18 40 40 H 1.09002 * 112.85017 * 314.66585 * 22 21 20 41 41 H 1.08992 * 113.61675 * 254.61398 * 23 22 21 42 42 H 1.09000 * 113.60973 * 25.51686 * 23 22 21 43 43 H 1.09005 * 113.62125 * 220.02158 * 24 23 22 44 44 H 1.09003 * 113.61268 * 89.11946 * 24 23 22 45 45 H 1.08999 * 113.61567 * 334.48261 * 25 22 21 46 46 H 1.09000 * 113.61379 * 105.30384 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 6 3.5025 -8.6985 -0.0009 16 7 2.9874 -10.0742 -0.0004 17 6 4.0871 -11.0482 -0.0011 18 6 3.5212 -12.4448 -0.0011 19 8 2.3201 -12.6125 -0.0011 20 7 4.3499 -13.5077 -0.0012 21 6 3.7997 -14.8656 -0.0018 22 6 4.9451 -15.8799 -0.0024 23 6 5.4739 -16.2129 1.4028 24 6 5.5783 -17.6748 0.9284 25 6 4.4738 -17.3412 -0.0883 26 1 -0.4850 0.8400 0.0004 27 1 3.1245 -3.7314 0.8894 28 1 3.1245 -3.7314 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 1.7221 -7.8752 -0.8910 31 1 1.7216 -7.8750 0.8890 32 1 4.1112 -8.5385 0.8890 33 1 4.1110 -8.5384 -0.8909 34 1 2.3682 -10.2282 0.7812 35 1 4.7004 -10.9043 0.8884 36 1 4.6991 -10.9045 -0.8914 37 1 5.3106 -13.3738 -0.0016 38 1 3.1873 -15.0091 -0.8920 39 1 3.1868 -15.0096 0.8880 40 1 5.7301 -15.6316 -0.7168 41 1 6.4374 -15.7551 1.6266 42 1 4.7386 -16.0619 2.1931 43 1 5.2734 -18.4013 1.6817 44 1 6.5364 -17.9172 0.4685 45 1 3.4656 -17.4981 0.2951 46 1 4.6293 -17.7932 -1.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:23 Heat of formation + Delta-G solvation = -59.949038 kcal Electronic energy + Delta-G solvation = -23676.251403 eV Core-core repulsion = 19920.409565 eV Total energy + Delta-G solvation = -3755.841838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.33692 -39.26524 -39.07399 -36.64320 -34.85196 -34.14578 -32.41294 -30.68823 -29.41016 -28.06130 -26.23861 -25.62616 -25.28542 -23.14470 -22.34812 -21.06997 -20.33644 -19.91049 -17.97893 -17.57654 -16.89262 -16.58510 -16.22400 -16.18892 -15.79875 -15.51206 -15.07118 -14.88188 -14.79132 -14.34971 -14.24460 -14.05891 -13.69776 -13.36672 -13.08742 -13.06298 -12.81376 -12.57222 -12.51962 -12.27423 -12.11162 -11.80701 -11.45587 -11.23022 -11.03979 -11.03036 -11.02644 -10.88240 -10.75895 -10.17311 -9.81036 -9.51898 -9.39910 -9.04884 -8.88735 -8.86164 -8.21765 -6.48160 -6.19806 -3.90474 2.27117 2.55852 3.02996 3.12991 3.24501 3.28010 3.30942 3.61191 3.94405 3.99656 4.07024 4.12130 4.22046 4.24736 4.36841 4.61864 4.65299 4.74102 4.86175 4.88867 4.90769 5.10385 5.13964 5.15138 5.18044 5.19735 5.22406 5.32216 5.34185 5.41213 5.59742 5.63245 5.77986 5.82951 5.90553 5.92808 5.99244 6.15083 6.39879 6.62453 6.89431 7.06743 7.60574 7.71446 7.84058 8.36465 8.63938 9.25164 10.87610 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.058433 B = 0.001263 C = 0.001244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.064770 B =22165.813343 C =22497.355126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.051 3.949 16 N -0.670 5.670 17 C 0.043 3.957 18 C 0.510 3.490 19 O -0.521 6.521 20 N -0.733 5.733 21 C 0.130 3.870 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.355 0.645 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 -33.970 1.437 38.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.304 5.304 17 C -0.090 4.090 18 C 0.295 3.705 19 O -0.396 6.396 20 N -0.387 5.387 21 C 0.006 3.994 22 C -0.144 4.144 23 C -0.175 4.175 24 C -0.181 4.181 25 C -0.170 4.170 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.175 0.825 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.379 -34.344 0.760 37.241 hybrid contribution 3.347 1.436 0.873 3.745 sum 17.726 -32.908 1.634 37.415 Atomic orbital electron populations 1.70007 1.05961 1.27572 1.46742 1.24986 0.95009 0.98992 0.94524 0.86230 0.79241 0.81279 0.78775 1.19939 1.20801 1.19962 1.22834 0.94875 0.91714 1.59106 0.90987 1.85426 1.04889 0.96254 1.96716 1.23528 1.06580 0.95350 1.04907 1.20297 0.86520 0.86216 0.75220 1.90717 1.15349 1.85551 1.47238 1.45884 1.09906 1.05417 1.78236 1.21117 0.95601 0.80219 1.03300 1.22116 0.96772 0.87560 1.01354 1.59959 1.17380 1.01180 1.51882 1.21781 0.94298 0.89794 1.03092 1.20607 0.87123 0.86579 0.76149 1.90751 1.14872 1.86260 1.47703 1.45968 1.10050 1.05954 1.76708 1.21372 0.95574 0.79984 1.02469 1.22833 0.98055 0.94923 0.98597 1.23057 1.01556 0.96587 0.96302 1.22859 0.99218 0.96921 0.99071 1.22872 0.99380 0.94649 1.00068 0.92116 0.89241 0.89193 0.76950 0.90465 0.91635 0.94370 0.90080 0.82502 0.92123 0.87853 0.76637 0.91330 0.91350 0.88588 0.91369 0.89853 0.91254 0.90107 0.89675 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 10.06 7.85 -10.99 -0.09 9.98 16 12 O -0.51 -12.03 15.86 5.55 0.09 -11.94 16 13 N -0.74 -9.79 5.56 -60.29 -0.33 -10.12 16 14 C 0.12 1.46 5.93 -4.04 -0.02 1.44 16 15 C 0.05 0.42 5.80 -3.82 -0.02 0.40 16 16 N -0.67 -6.01 6.12 -115.06 -0.70 -6.71 16 17 C 0.04 0.27 6.17 -4.98 -0.03 0.24 16 18 C 0.51 4.27 7.87 -10.99 -0.09 4.18 16 19 O -0.52 -6.84 16.20 5.56 0.09 -6.75 16 20 N -0.73 -3.84 5.56 -60.29 -0.33 -4.17 16 21 C 0.13 0.71 5.50 -4.04 -0.02 0.69 16 22 C -0.13 -0.42 3.75 -89.80 -0.34 -0.75 16 23 C -0.14 -0.44 7.65 -25.77 -0.20 -0.64 16 24 C -0.14 -0.44 8.09 -25.78 -0.21 -0.65 16 25 C -0.13 -0.44 7.64 -25.92 -0.20 -0.64 16 26 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.40 3.89 8.47 -40.82 -0.35 3.55 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.36 3.41 8.43 -39.29 -0.33 3.08 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 0.94 8.47 -40.82 -0.35 0.59 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 7.88 -51.93 -0.41 0.04 16 40 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -37.63 400.74 -10.18 -47.81 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.73 Total: 0.57 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.79 Total: -1.68 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.64 Total: -46.62 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.63 -10.18 -47.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.140 kcal (2) G-P(sol) polarization free energy of solvation -37.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds