Wall clock time and date at job start Tue Mar 31 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47408 * 240.00418 * 3 2 1 5 5 H 1.48500 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47024 * 120.00416 * 3 2 1 7 7 C 1.38805 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99668 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99983 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47080 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99983 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99947 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00081 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47075 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.46994 * 179.97438 * 15 14 13 17 17 C 1.46900 * 111.00274 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47417 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00190 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00270 * 180.02562 * 18 17 16 21 21 C 1.46504 * 120.00207 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46983 * 179.97438 * 21 20 18 23 23 C 1.53786 * 113.61503 * 85.86203 * 22 21 20 24 24 C 1.54049 * 86.98426 * 140.01654 * 23 22 21 25 25 C 1.53781 * 113.61337 * 183.46996 * 22 21 20 26 26 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47267 * 60.00096 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99767 * 10 9 7 29 29 H 0.97006 * 120.00220 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47043 * 59.99528 * 14 13 11 31 31 H 1.08996 * 109.46825 * 299.99450 * 14 13 11 32 32 H 1.09000 * 109.47292 * 60.00022 * 15 14 13 33 33 H 1.08996 * 109.47124 * 299.99608 * 15 14 13 34 34 H 1.00896 * 111.00108 * 303.95353 * 16 15 14 35 35 H 1.09000 * 109.46779 * 60.00138 * 17 16 15 36 36 H 1.08994 * 109.47117 * 300.00753 * 17 16 15 37 37 H 0.96999 * 120.00146 * 359.97438 * 20 18 17 38 38 H 1.09000 * 109.47232 * 59.99775 * 21 20 18 39 39 H 1.08997 * 109.47041 * 299.99591 * 21 20 18 40 40 H 1.09002 * 112.85017 * 314.66585 * 22 21 20 41 41 H 1.08992 * 113.61675 * 254.61398 * 23 22 21 42 42 H 1.09000 * 113.60973 * 25.51686 * 23 22 21 43 43 H 1.09005 * 113.62125 * 220.02158 * 24 23 22 44 44 H 1.09003 * 113.61268 * 89.11946 * 24 23 22 45 45 H 1.08999 * 113.61567 * 334.48261 * 25 22 21 46 46 H 1.09000 * 113.61379 * 105.30384 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 6 3.5025 -8.6985 -0.0009 16 7 2.9874 -10.0742 -0.0004 17 6 4.0871 -11.0482 -0.0011 18 6 3.5212 -12.4448 -0.0011 19 8 2.3201 -12.6125 -0.0011 20 7 4.3499 -13.5077 -0.0012 21 6 3.7997 -14.8656 -0.0018 22 6 4.9451 -15.8799 -0.0024 23 6 5.4739 -16.2129 1.4028 24 6 5.5783 -17.6748 0.9284 25 6 4.4738 -17.3412 -0.0883 26 1 -0.4850 0.8400 0.0004 27 1 3.1245 -3.7314 0.8894 28 1 3.1245 -3.7314 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 1.7221 -7.8752 -0.8910 31 1 1.7216 -7.8750 0.8890 32 1 4.1112 -8.5385 0.8890 33 1 4.1110 -8.5384 -0.8909 34 1 2.3682 -10.2282 0.7812 35 1 4.7004 -10.9043 0.8884 36 1 4.6991 -10.9045 -0.8914 37 1 5.3106 -13.3738 -0.0016 38 1 3.1873 -15.0091 -0.8920 39 1 3.1868 -15.0096 0.8880 40 1 5.7301 -15.6316 -0.7168 41 1 6.4374 -15.7551 1.6266 42 1 4.7386 -16.0619 2.1931 43 1 5.2734 -18.4013 1.6817 44 1 6.5364 -17.9172 0.4685 45 1 3.4656 -17.4981 0.2951 46 1 4.6293 -17.7932 -1.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:23 Heat of formation + Delta-G solvation = -90.318815 kcal Electronic energy + Delta-G solvation = -23677.568336 eV Core-core repulsion = 19920.409565 eV Total energy + Delta-G solvation = -3757.158770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90851 -40.59230 -39.57390 -37.47751 -35.46287 -35.27563 -34.57032 -31.82748 -30.31739 -28.89559 -27.65005 -26.51853 -26.12716 -23.56607 -23.11923 -21.81947 -21.58514 -20.23423 -19.83729 -18.35911 -17.74762 -17.49285 -17.21768 -17.03538 -16.86373 -16.64473 -16.40097 -15.88553 -15.72951 -15.47315 -14.99154 -14.90058 -14.66881 -14.61410 -14.26388 -14.07849 -13.60295 -13.36224 -13.33612 -13.15705 -12.87951 -12.85206 -12.69676 -12.61144 -12.55501 -12.39551 -11.73603 -11.53568 -11.35818 -11.16395 -11.11456 -11.01007 -10.79755 -10.26041 -10.13820 -10.08257 -9.45613 -8.65964 -8.33037 -6.11666 1.27406 1.45371 1.47720 1.57205 1.61908 1.65489 2.01246 2.28592 2.33902 3.01148 3.26999 3.40808 3.62715 3.69469 3.78774 3.85116 3.91690 3.99557 4.05706 4.11301 4.31626 4.32938 4.40208 4.43646 4.51086 4.52664 4.53529 4.73001 4.87074 4.88524 4.91744 4.94155 4.98985 5.10486 5.11549 5.29674 5.39323 5.42893 5.46573 5.61762 5.85133 6.20967 6.21609 6.51943 6.60595 7.07985 7.26152 7.30024 8.76098 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.058433 B = 0.001263 C = 0.001244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.064770 B =22165.813343 C =22497.355126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.127 4.127 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.122 3.878 15 C 0.067 3.933 16 N -0.694 5.694 17 C 0.048 3.952 18 C 0.505 3.495 19 O -0.579 6.579 20 N -0.716 5.716 21 C 0.130 3.870 22 C -0.115 4.115 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.137 4.137 26 H 0.271 0.729 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.419 0.581 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.348 0.652 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.417 0.583 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.856 -34.222 1.462 40.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.363 5.363 14 C -0.002 4.002 15 C -0.062 4.062 16 N -0.327 5.327 17 C -0.084 4.084 18 C 0.292 3.708 19 O -0.458 6.458 20 N -0.369 5.369 21 C 0.006 3.994 22 C -0.134 4.134 23 C -0.174 4.174 24 C -0.179 4.179 25 C -0.175 4.175 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.166 0.834 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.254 0.746 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.797 -34.648 0.783 39.426 hybrid contribution 2.058 1.331 0.863 2.598 sum 20.855 -33.316 1.647 39.340 Atomic orbital electron populations 1.70185 1.08072 1.28678 1.47992 1.26142 0.95926 1.03365 0.93684 0.84997 0.77787 0.75611 0.79551 1.18570 1.20510 1.18561 1.23189 0.95409 0.91920 1.58966 0.89708 1.85653 1.10805 0.99415 1.97075 1.23362 1.03461 0.93992 1.07058 1.20127 0.86206 0.86823 0.75111 1.90708 1.17684 1.86146 1.50125 1.45544 1.10426 1.04769 1.75606 1.21179 0.97275 0.80107 1.01660 1.21978 0.94885 0.86046 1.03318 1.59926 1.18777 1.02030 1.52008 1.21862 0.93585 0.87425 1.05480 1.21124 0.86567 0.88016 0.75141 1.90732 1.17347 1.87106 1.50626 1.45853 1.10787 1.05270 1.75033 1.21331 0.96308 0.80766 1.00958 1.22798 0.97399 0.93992 0.99199 1.23039 1.01755 0.96781 0.95793 1.22869 0.99364 0.96793 0.98854 1.22909 0.99298 0.94817 1.00454 0.92014 0.86875 0.86920 0.74328 0.92734 0.92899 0.91922 0.88342 0.83363 0.89090 0.85613 0.74560 0.93004 0.92871 0.87135 0.90322 0.90738 0.91406 0.89231 0.90388 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.55 -31.24 9.50 67.96 0.65 -30.59 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.53 19.76 7.85 87.66 0.69 20.45 16 12 O -0.57 -27.27 15.86 -3.04 -0.05 -27.32 16 13 N -0.71 -17.22 5.56 -463.07 -2.57 -19.79 16 14 C 0.12 2.79 5.93 86.38 0.51 3.30 16 15 C 0.07 0.88 5.80 86.30 0.50 1.38 16 16 N -0.69 -11.26 6.12 -517.95 -3.17 -14.44 16 17 C 0.05 0.46 6.17 85.55 0.53 0.99 16 18 C 0.50 7.94 7.87 87.65 0.69 8.63 16 19 O -0.58 -15.64 16.20 -3.02 -0.05 -15.69 16 20 N -0.72 -6.44 5.56 -463.06 -2.57 -9.01 16 21 C 0.13 1.41 5.50 86.38 0.47 1.88 16 22 C -0.12 -0.61 3.75 -10.26 -0.04 -0.65 16 23 C -0.14 -0.67 7.65 31.21 0.24 -0.43 16 24 C -0.14 -0.68 8.09 31.21 0.25 -0.43 16 25 C -0.14 -0.82 7.64 31.12 0.24 -0.59 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 28 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 29 H 0.42 6.59 8.47 -92.70 -0.79 5.80 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.35 6.51 8.43 -89.70 -0.76 5.75 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.42 0.79 8.47 -92.71 -0.79 0.00 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.75 7.88 -2.39 -0.02 0.73 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.07 0.51 7.92 -2.39 -0.02 0.49 16 43 H 0.07 0.35 8.14 -2.38 -0.02 0.34 16 44 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.08 0.57 8.10 -2.39 -0.02 0.56 16 46 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -86.65 400.74 -2.96 -89.61 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -1.33 Total: 16.74 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.63 Total: 0.63 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -8.03 Total: -99.50 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.10 Total: -43.01 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -86.65 -2.96 -89.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.713 kcal (2) G-P(sol) polarization free energy of solvation -86.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds