Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47007 * 270.00323 * 3 2 1 5 5 H 1.48502 * 109.47201 * 29.99897 * 3 2 1 6 6 H 1.48503 * 109.47203 * 150.00318 * 3 2 1 7 7 C 1.38799 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00394 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00109 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47232 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99861 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00253 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99927 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.46830 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.46789 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99723 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47158 * 180.02562 * 17 16 15 19 19 H 1.09006 * 108.56269 * 302.93726 * 18 17 16 20 20 C 1.51780 * 108.61797 * 60.73370 * 18 17 16 21 21 C 1.52988 * 110.88291 * 188.12372 * 20 18 17 22 22 N 1.47190 * 108.66574 * 273.53540 * 21 20 18 23 23 C 1.33292 * 120.40452 * 72.20451 * 22 21 20 24 24 O 1.21287 * 119.83355 * 179.53607 * 23 22 21 25 25 C 1.51422 * 120.27480 * 359.24962 * 23 22 21 26 26 C 1.51787 * 108.61879 * 185.00012 * 18 17 16 27 27 H 0.96998 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47005 * 60.00242 * 10 9 7 29 29 H 1.08994 * 109.47405 * 299.99669 * 10 9 7 30 30 H 0.97000 * 119.99888 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47128 * 60.00085 * 14 13 11 32 32 H 1.09004 * 109.47221 * 299.99793 * 14 13 11 33 33 H 1.09001 * 109.47059 * 60.00532 * 15 14 13 34 34 H 1.08994 * 109.46917 * 299.99775 * 15 14 13 35 35 H 1.00906 * 111.00174 * 56.04933 * 16 15 14 36 36 H 1.08992 * 109.47158 * 60.00030 * 17 16 15 37 37 H 1.08997 * 109.47126 * 299.99799 * 17 16 15 38 38 H 1.08998 * 109.19571 * 308.48649 * 20 18 17 39 39 H 1.08996 * 109.19469 * 67.81313 * 20 18 17 40 40 H 1.08998 * 109.60663 * 33.29086 * 21 20 18 41 41 H 1.09000 * 109.60550 * 153.78169 * 21 20 18 42 42 H 0.97004 * 119.78999 * 251.95997 * 22 21 20 43 43 H 1.09002 * 109.63428 * 169.35358 * 25 23 22 44 44 H 1.08995 * 109.63284 * 48.95926 * 25 23 22 45 45 H 1.09003 * 109.21809 * 51.74384 * 26 18 17 46 46 H 1.08997 * 109.18869 * 292.37596 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0049 14 6 2.3305 -7.7150 -0.0050 15 6 3.5026 -8.6985 -0.0060 16 7 2.9874 -10.0742 -0.0054 17 6 4.0872 -11.0482 -0.0069 18 6 3.5127 -12.4662 -0.0069 19 1 2.8625 -12.5772 0.8610 20 6 2.6777 -12.6507 -1.2609 21 6 1.9160 -13.9768 -1.2187 22 7 2.7876 -15.0378 -1.7489 23 6 3.8257 -15.4765 -1.0373 24 8 4.5322 -16.3570 -1.4806 25 6 4.1302 -14.8756 0.3189 26 6 4.6589 -13.4535 0.1168 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7321 0.8872 29 1 3.1245 -3.7306 -0.8927 30 1 3.8010 -6.1835 -0.0051 31 1 1.7209 -7.8747 -0.8944 32 1 1.7228 -7.8755 0.8856 33 1 4.1117 -8.5387 0.8837 34 1 4.1106 -8.5382 -0.8963 35 1 2.3672 -10.2284 -0.7862 36 1 4.7010 -10.9045 0.8822 37 1 4.6986 -10.9043 -0.8977 38 1 1.9646 -11.8302 -1.3406 39 1 3.3327 -12.6421 -2.1321 40 1 1.6422 -14.2087 -0.1894 41 1 1.0171 -13.9020 -1.8307 42 1 2.6032 -15.4225 -2.6201 43 1 4.8841 -15.4781 0.8256 44 1 3.2208 -14.8464 0.9190 45 1 5.2801 -13.1771 0.9688 46 1 5.2603 -13.4199 -0.7916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = -88.841406 kcal Electronic energy + Delta-G solvation = -24466.424410 eV Core-core repulsion = 20709.329705 eV Total energy + Delta-G solvation = -3757.094705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75799 -39.24567 -38.29225 -36.40291 -34.92548 -33.76697 -32.44234 -31.72524 -30.15483 -28.69192 -26.90068 -25.48461 -24.58960 -23.62094 -22.37078 -20.77093 -20.38724 -20.14898 -17.89835 -17.73845 -17.35596 -16.69334 -16.31500 -16.04823 -15.53034 -15.28078 -15.15270 -14.84226 -14.81210 -14.39787 -14.14986 -14.07396 -13.69567 -13.50386 -13.19068 -13.11140 -12.91251 -12.62025 -12.55924 -12.22109 -12.04501 -11.91696 -11.55102 -11.23851 -11.18722 -11.07562 -11.06643 -11.03877 -10.77429 -10.23147 -9.83229 -9.63907 -9.45209 -9.08546 -8.93562 -8.91386 -8.25377 -6.51656 -6.23081 -3.93811 2.20178 2.81003 2.93649 3.07364 3.21209 3.24982 3.29239 3.52818 3.90705 3.94957 4.12885 4.14952 4.19051 4.27149 4.58101 4.63128 4.68792 4.76874 4.81244 4.87597 4.98323 5.02398 5.10807 5.12140 5.16285 5.19477 5.25922 5.36676 5.40161 5.46441 5.58659 5.60108 5.72311 5.76789 5.86652 5.88781 6.11666 6.29556 6.45595 6.59272 6.76082 6.87815 7.58087 7.66093 7.77109 8.33739 8.58206 9.22263 10.84343 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.001430 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.460229 B =19578.898350 C =19900.333188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.686 5.686 17 C 0.062 3.938 18 C -0.090 4.090 19 H 0.085 0.915 20 C -0.141 4.141 21 C 0.108 3.892 22 N -0.725 5.725 23 C 0.517 3.483 24 O -0.556 6.556 25 C -0.138 4.138 26 C -0.107 4.107 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.343 0.657 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.400 0.600 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -28.650 -0.645 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.081 4.081 16 N -0.319 5.319 17 C -0.067 4.067 18 C -0.109 4.109 19 H 0.103 0.897 20 C -0.180 4.180 21 C -0.016 4.016 22 N -0.377 5.377 23 C 0.304 3.696 24 O -0.434 6.434 25 C -0.178 4.178 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.047 -29.261 0.012 30.098 hybrid contribution 2.622 1.408 -1.289 3.243 sum 9.669 -27.853 -1.276 29.511 Atomic orbital electron populations 1.70018 1.05954 1.27469 1.46823 1.24991 0.95024 0.99023 0.94510 0.86167 0.79411 0.81564 0.78345 1.20278 1.20730 1.19703 1.22871 0.94917 0.91665 1.59012 0.90921 1.85402 1.04907 0.96321 1.96721 1.23529 1.06597 0.95341 1.04935 1.20301 0.86497 0.86239 0.75133 1.90709 1.15356 1.85585 1.47374 1.45900 1.09957 1.05445 1.78168 1.21137 0.95711 0.80408 1.02929 1.22100 0.96593 0.88057 1.01322 1.60418 1.18962 1.02000 1.50515 1.22045 0.92735 0.90919 1.01021 1.20858 0.96959 0.93929 0.99111 0.89677 1.21938 0.99754 0.97752 0.98527 1.21795 0.92813 0.86214 1.00770 1.45991 1.29661 1.40007 1.22024 1.20626 0.79741 0.81625 0.87631 1.90767 1.49027 1.31516 1.72101 1.21968 1.03767 0.97708 0.94368 1.21232 0.97877 0.92170 1.03269 0.92169 0.89176 0.89240 0.76897 0.91892 0.90653 0.90227 0.94556 0.83746 0.90499 0.95052 0.89889 0.91223 0.90194 0.89221 0.76421 0.88382 0.89016 0.90150 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.70 7.85 -10.98 -0.09 9.61 16 12 O -0.52 -11.58 15.86 5.55 0.09 -11.49 16 13 N -0.74 -9.29 5.56 -60.29 -0.33 -9.62 16 14 C 0.12 1.31 5.93 -4.04 -0.02 1.29 16 15 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 16 N -0.69 -4.25 6.48 -113.78 -0.74 -4.99 16 17 C 0.06 0.30 5.09 -3.82 -0.02 0.28 16 18 C -0.09 -0.33 1.93 -91.86 -0.18 -0.51 16 19 H 0.08 0.33 7.87 -51.93 -0.41 -0.08 16 20 C -0.14 -0.46 4.88 -27.36 -0.13 -0.59 16 21 C 0.11 0.29 6.46 -3.67 -0.02 0.27 16 22 N -0.72 -3.59 5.27 -59.92 -0.32 -3.90 16 23 C 0.52 3.97 7.07 -11.29 -0.08 3.89 16 24 O -0.56 -6.91 17.92 5.55 0.10 -6.81 16 25 C -0.14 -0.66 5.56 -27.50 -0.15 -0.82 16 26 C -0.11 -0.44 4.91 -27.32 -0.13 -0.57 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 1.88 6.55 -39.29 -0.26 1.63 16 36 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.24 6.06 -51.93 -0.31 -0.07 16 39 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 40 H 0.08 0.17 6.71 -51.93 -0.35 -0.17 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.40 1.78 8.91 -40.82 -0.36 1.42 16 43 H 0.10 0.49 8.13 -51.93 -0.42 0.07 16 44 H 0.09 0.29 6.78 -51.93 -0.35 -0.06 16 45 H 0.08 0.27 8.05 -51.93 -0.42 -0.15 16 46 H 0.07 0.35 7.87 -51.93 -0.41 -0.05 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -37.18 385.18 -9.73 -46.92 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.40 Total: -0.51 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.43 Total: -2.51 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.65 Total: -43.77 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.19 Total: -18.30 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.18 -9.73 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.922 kcal (2) G-P(sol) polarization free energy of solvation -37.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds