Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47007 * 270.00323 * 3 2 1 5 5 H 1.48502 * 109.47201 * 29.99897 * 3 2 1 6 6 H 1.48503 * 109.47203 * 150.00318 * 3 2 1 7 7 C 1.38799 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00394 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00109 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47232 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99861 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00253 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99927 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.46830 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.46789 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99723 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47158 * 180.02562 * 17 16 15 19 19 H 1.09006 * 108.56269 * 302.93726 * 18 17 16 20 20 C 1.51780 * 108.61797 * 60.73370 * 18 17 16 21 21 C 1.52988 * 110.88291 * 188.12372 * 20 18 17 22 22 N 1.47190 * 108.66574 * 273.53540 * 21 20 18 23 23 C 1.33292 * 120.40452 * 72.20451 * 22 21 20 24 24 O 1.21287 * 119.83355 * 179.53607 * 23 22 21 25 25 C 1.51422 * 120.27480 * 359.24962 * 23 22 21 26 26 C 1.51787 * 108.61879 * 185.00012 * 18 17 16 27 27 H 0.96998 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47005 * 60.00242 * 10 9 7 29 29 H 1.08994 * 109.47405 * 299.99669 * 10 9 7 30 30 H 0.97000 * 119.99888 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47128 * 60.00085 * 14 13 11 32 32 H 1.09004 * 109.47221 * 299.99793 * 14 13 11 33 33 H 1.09001 * 109.47059 * 60.00532 * 15 14 13 34 34 H 1.08994 * 109.46917 * 299.99775 * 15 14 13 35 35 H 1.00906 * 111.00174 * 56.04933 * 16 15 14 36 36 H 1.08992 * 109.47158 * 60.00030 * 17 16 15 37 37 H 1.08997 * 109.47126 * 299.99799 * 17 16 15 38 38 H 1.08998 * 109.19571 * 308.48649 * 20 18 17 39 39 H 1.08996 * 109.19469 * 67.81313 * 20 18 17 40 40 H 1.08998 * 109.60663 * 33.29086 * 21 20 18 41 41 H 1.09000 * 109.60550 * 153.78169 * 21 20 18 42 42 H 0.97004 * 119.78999 * 251.95997 * 22 21 20 43 43 H 1.09002 * 109.63428 * 169.35358 * 25 23 22 44 44 H 1.08995 * 109.63284 * 48.95926 * 25 23 22 45 45 H 1.09003 * 109.21809 * 51.74384 * 26 18 17 46 46 H 1.08997 * 109.18869 * 292.37596 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0049 14 6 2.3305 -7.7150 -0.0050 15 6 3.5026 -8.6985 -0.0060 16 7 2.9874 -10.0742 -0.0054 17 6 4.0872 -11.0482 -0.0069 18 6 3.5127 -12.4662 -0.0069 19 1 2.8625 -12.5772 0.8610 20 6 2.6777 -12.6507 -1.2609 21 6 1.9160 -13.9768 -1.2187 22 7 2.7876 -15.0378 -1.7489 23 6 3.8257 -15.4765 -1.0373 24 8 4.5322 -16.3570 -1.4806 25 6 4.1302 -14.8756 0.3189 26 6 4.6589 -13.4535 0.1168 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7321 0.8872 29 1 3.1245 -3.7306 -0.8927 30 1 3.8010 -6.1835 -0.0051 31 1 1.7209 -7.8747 -0.8944 32 1 1.7228 -7.8755 0.8856 33 1 4.1117 -8.5387 0.8837 34 1 4.1106 -8.5382 -0.8963 35 1 2.3672 -10.2284 -0.7862 36 1 4.7010 -10.9045 0.8822 37 1 4.6986 -10.9043 -0.8977 38 1 1.9646 -11.8302 -1.3406 39 1 3.3327 -12.6421 -2.1321 40 1 1.6422 -14.2087 -0.1894 41 1 1.0171 -13.9020 -1.8307 42 1 2.6032 -15.4225 -2.6201 43 1 4.8841 -15.4781 0.8256 44 1 3.2208 -14.8464 0.9190 45 1 5.2801 -13.1771 0.9688 46 1 5.2603 -13.4199 -0.7916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = -119.156015 kcal Electronic energy + Delta-G solvation = -24467.738950 eV Core-core repulsion = 20709.329705 eV Total energy + Delta-G solvation = -3758.409245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24193 -40.60092 -38.84635 -37.11302 -35.70210 -34.57975 -34.47879 -32.29485 -31.29285 -29.47706 -27.80251 -27.42777 -25.01820 -24.07863 -23.08116 -21.76630 -21.06795 -20.59563 -19.82608 -18.24689 -17.90063 -17.77575 -17.31592 -17.08686 -16.86804 -16.50418 -16.04164 -15.80922 -15.65850 -15.33925 -15.08723 -14.77028 -14.65621 -14.48617 -14.14106 -14.04273 -13.62640 -13.50209 -13.28549 -13.15581 -13.06926 -12.88469 -12.63942 -12.54875 -12.43859 -12.37038 -11.74926 -11.65210 -11.53788 -11.35507 -11.13379 -10.97634 -10.83530 -10.26488 -10.11717 -10.10839 -9.39654 -8.65671 -8.33774 -6.11831 1.27837 1.43380 1.48014 1.58249 1.62327 1.63688 2.21902 2.28948 2.40926 3.00509 3.23353 3.37814 3.54704 3.79258 3.81656 3.88286 3.95115 4.07449 4.14954 4.29065 4.32422 4.38418 4.50983 4.52736 4.52849 4.56173 4.62710 4.67897 4.81783 4.89907 4.96774 5.00502 5.02809 5.11575 5.15738 5.28750 5.42671 5.43390 5.47117 5.87926 6.00639 6.20759 6.29897 6.42578 6.51384 7.07681 7.24529 7.25625 8.75418 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.001430 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.460229 B =19578.898350 C =19900.333188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.712 5.712 14 C 0.124 3.876 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.065 3.935 18 C -0.083 4.083 19 H 0.091 0.909 20 C -0.138 4.138 21 C 0.106 3.894 22 N -0.716 5.716 23 C 0.510 3.490 24 O -0.614 6.614 25 C -0.133 4.133 26 C -0.101 4.101 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.347 0.653 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.401 0.599 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 -28.543 -0.238 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.367 5.367 14 C 0.000 4.000 15 C -0.068 4.068 16 N -0.325 5.325 17 C -0.064 4.064 18 C -0.102 4.102 19 H 0.109 0.891 20 C -0.177 4.177 21 C -0.017 4.017 22 N -0.366 5.366 23 C 0.298 3.702 24 O -0.497 6.497 25 C -0.173 4.173 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.237 0.763 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.815 -29.168 0.418 30.474 hybrid contribution 2.088 1.255 -1.428 2.824 sum 10.903 -27.913 -1.011 29.984 Atomic orbital electron populations 1.70184 1.07976 1.28599 1.48000 1.26118 0.95946 1.03291 0.93725 0.84957 0.78211 0.76053 0.78770 1.19342 1.20345 1.18184 1.23217 0.95384 0.92026 1.58884 0.89855 1.85582 1.10643 0.99263 1.97059 1.23373 1.03525 0.94309 1.06885 1.20053 0.86209 0.86695 0.75125 1.90698 1.17477 1.86114 1.50146 1.45618 1.10363 1.05108 1.75580 1.21231 0.97095 0.79746 1.01932 1.21948 0.94940 0.87720 1.02234 1.60407 1.19524 1.01609 1.50919 1.22045 0.92319 0.91017 1.01034 1.20805 0.96796 0.93086 0.99512 0.89108 1.21906 0.99679 0.98223 0.97864 1.22004 0.92805 0.85063 1.01820 1.46066 1.28978 1.39761 1.21793 1.21168 0.79544 0.80936 0.88586 1.90735 1.51163 1.34233 1.73559 1.21967 1.04705 0.97707 0.92878 1.21184 0.97961 0.91757 1.03048 0.92002 0.87127 0.87116 0.74614 0.92498 0.92150 0.89471 0.93435 0.83287 0.90325 0.95190 0.89167 0.92270 0.89018 0.87342 0.76310 0.88783 0.86875 0.89016 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 11 C 0.53 18.91 7.85 87.66 0.69 19.60 16 12 O -0.57 -25.70 15.86 -3.05 -0.05 -25.75 16 13 N -0.71 -16.28 5.56 -463.04 -2.57 -18.86 16 14 C 0.12 2.43 5.93 86.38 0.51 2.94 16 15 C 0.06 0.71 5.80 86.31 0.50 1.21 16 16 N -0.69 -6.80 6.48 -513.89 -3.33 -10.13 16 17 C 0.06 0.47 5.09 86.30 0.44 0.91 16 18 C -0.08 -0.43 1.93 -11.59 -0.02 -0.45 16 19 H 0.09 0.43 7.87 -2.38 -0.02 0.41 16 20 C -0.14 -0.61 4.88 30.19 0.15 -0.46 16 21 C 0.11 0.34 6.46 86.24 0.56 0.90 16 22 N -0.72 -6.46 5.27 -462.71 -2.44 -8.89 16 23 C 0.51 7.71 7.07 88.12 0.62 8.34 16 24 O -0.61 -15.90 17.92 -3.05 -0.05 -15.95 16 25 C -0.13 -1.12 5.56 30.10 0.17 -0.95 16 26 C -0.10 -0.67 4.91 30.22 0.15 -0.52 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 30 H 0.42 6.47 8.47 -92.71 -0.79 5.68 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.35 2.98 6.55 -89.69 -0.59 2.39 16 36 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 37 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.09 0.30 6.06 -2.39 -0.01 0.29 16 39 H 0.06 0.42 8.05 -2.39 -0.02 0.40 16 40 H 0.09 0.14 6.71 -2.39 -0.02 0.12 16 41 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.40 3.40 8.91 -92.71 -0.83 2.58 16 43 H 0.09 0.89 8.13 -2.39 -0.02 0.87 16 44 H 0.11 0.45 6.78 -2.39 -0.02 0.44 16 45 H 0.09 0.42 8.05 -2.39 -0.02 0.40 16 46 H 0.05 0.51 7.87 -2.39 -0.02 0.49 16 Total: -1.00 -84.06 385.18 -3.17 -87.23 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -1.19 Total: 14.07 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.31 Total: -1.99 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -8.05 Total: -93.14 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.10 Total: -41.70 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -84.06 -3.17 -87.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.926 kcal (2) G-P(sol) polarization free energy of solvation -84.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds