Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72398 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71956 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72206 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76192 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47401 * 180.02562 * 14 13 11 16 16 N 1.46901 * 109.47208 * 180.02562 * 15 14 13 17 17 C 1.46897 * 111.00229 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47483 * 179.97438 * 17 16 15 19 19 H 1.09004 * 108.56446 * 57.06330 * 18 17 16 20 20 C 1.51776 * 108.61893 * 299.26139 * 18 17 16 21 21 C 1.52939 * 110.88754 * 171.88965 * 20 18 17 22 22 N 1.47191 * 108.69352 * 86.45535 * 21 20 18 23 23 C 1.33376 * 120.42483 * 288.04884 * 22 21 20 24 24 O 1.21278 * 119.89248 * 180.25313 * 23 22 21 25 25 C 1.51425 * 120.21436 * 0.27570 * 23 22 21 26 26 C 1.51792 * 108.61978 * 174.99954 * 18 17 16 27 27 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 28 28 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 29 29 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 30 30 H 0.97004 * 119.99890 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46943 * 299.99945 * 14 13 11 32 32 H 1.09003 * 109.47001 * 59.99659 * 14 13 11 33 33 H 1.09003 * 109.46848 * 299.99783 * 15 14 13 34 34 H 1.08993 * 109.47154 * 59.99304 * 15 14 13 35 35 H 1.00906 * 110.99883 * 303.95035 * 16 15 14 36 36 H 1.09001 * 109.47055 * 300.00038 * 17 16 15 37 37 H 1.09002 * 109.47139 * 59.99060 * 17 16 15 38 38 H 1.09004 * 109.19669 * 292.24334 * 20 18 17 39 39 H 1.09002 * 109.19711 * 51.51971 * 20 18 17 40 40 H 1.08995 * 109.59697 * 326.68159 * 21 20 18 41 41 H 1.09011 * 109.72668 * 206.29088 * 21 20 18 42 42 H 0.96995 * 119.79136 * 108.02684 * 22 21 20 43 43 H 1.08998 * 109.63497 * 311.51994 * 25 23 22 44 44 H 1.09004 * 109.62947 * 190.91941 * 25 23 22 45 45 H 1.09005 * 109.21852 * 308.25669 * 26 18 17 46 46 H 1.09002 * 109.22180 * 67.60355 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1091 1.6935 -1.2092 5 1 1.2853 2.7464 -0.0069 6 1 3.0989 1.6995 1.2159 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0128 10 6 2.5160 -3.8913 0.0180 11 6 1.9875 -5.3026 0.0250 12 8 0.7912 -5.5022 0.0258 13 7 2.8443 -6.3430 0.0292 14 6 2.3306 -7.7149 0.0354 15 6 3.5027 -8.6984 0.0400 16 7 2.9876 -10.0741 0.0456 17 6 4.0873 -11.0480 0.0507 18 6 3.5128 -12.4660 0.0570 19 1 2.8622 -12.5807 -0.8100 20 6 2.6787 -12.6452 1.3123 21 6 1.9175 -13.9712 1.2764 22 7 2.7892 -15.0302 1.8105 23 6 3.8305 -15.4692 1.1020 24 8 4.5397 -16.3453 1.5493 25 6 4.1303 -14.8767 -0.2589 26 6 4.6590 -13.4538 -0.0632 27 1 -0.4851 0.8400 -0.0041 28 1 3.1245 -3.7353 -0.8727 29 1 3.1245 -3.7272 0.9073 30 1 3.8011 -6.1834 0.0274 31 1 1.7223 -7.8711 0.9264 32 1 1.7216 -7.8789 -0.8536 33 1 4.1113 -8.5423 -0.8508 34 1 4.1113 -8.5342 0.9291 35 1 2.3678 -10.2250 0.8274 36 1 4.7006 -10.9081 -0.8395 37 1 4.6994 -10.9003 0.9404 38 1 3.3341 -12.6319 2.1832 39 1 1.9655 -11.8245 1.3890 40 1 1.6427 -14.2073 0.2484 41 1 1.0177 -13.8956 1.8872 42 1 2.6054 -15.4111 2.6834 43 1 3.2185 -14.8498 -0.8556 44 1 4.8840 -15.4813 -0.7635 45 1 5.2797 -13.1811 -0.9167 46 1 5.2616 -13.4165 0.8444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -88.832441 kcal Electronic energy + Delta-G solvation = -24466.983622 eV Core-core repulsion = 20709.889305 eV Total energy + Delta-G solvation = -3757.094316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75606 -39.24567 -38.29220 -36.40443 -34.92403 -33.76621 -32.44141 -31.72708 -30.15479 -28.69105 -26.89941 -25.48156 -24.58847 -23.61907 -22.37047 -20.77056 -20.38709 -20.14790 -17.89690 -17.73781 -17.35580 -16.69294 -16.31520 -16.04766 -15.52929 -15.27999 -15.15187 -14.84241 -14.81037 -14.39765 -14.15127 -14.07370 -13.69507 -13.50390 -13.19074 -13.11343 -12.91425 -12.61677 -12.55725 -12.22059 -12.04672 -11.91698 -11.55066 -11.23929 -11.18774 -11.06613 -11.05863 -11.04829 -10.78001 -10.23070 -9.83985 -9.63806 -9.45202 -9.07725 -8.93515 -8.91364 -8.25690 -6.51586 -6.22716 -3.93588 2.20122 2.80890 2.93679 3.07393 3.22511 3.24920 3.28225 3.52753 3.90683 3.94923 4.12757 4.14993 4.19360 4.27207 4.58162 4.63138 4.68764 4.76933 4.81320 4.87570 4.98329 5.02328 5.10799 5.12359 5.16339 5.19518 5.25918 5.36612 5.40180 5.46349 5.58746 5.60107 5.72283 5.76771 5.86722 5.88792 6.11695 6.29765 6.45618 6.59314 6.75835 6.87804 7.57920 7.66103 7.77032 8.33683 8.58223 9.22407 10.84637 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.047362 B = 0.001430 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.047130 B =19576.429478 C =19896.999312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.686 5.686 17 C 0.062 3.938 18 C -0.090 4.090 19 H 0.085 0.915 20 C -0.141 4.141 21 C 0.108 3.892 22 N -0.725 5.725 23 C 0.517 3.483 24 O -0.556 6.556 25 C -0.138 4.138 26 C -0.107 4.107 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.343 0.657 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.400 0.600 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -28.647 0.750 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.081 4.081 16 N -0.319 5.319 17 C -0.067 4.067 18 C -0.108 4.108 19 H 0.103 0.897 20 C -0.180 4.180 21 C -0.016 4.016 22 N -0.377 5.377 23 C 0.304 3.696 24 O -0.434 6.434 25 C -0.178 4.178 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.236 0.764 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.029 -29.259 0.103 30.091 hybrid contribution 2.636 1.414 1.278 3.253 sum 9.664 -27.845 1.381 29.507 Atomic orbital electron populations 1.70002 1.05956 1.27589 1.46717 1.24987 0.95020 0.99008 0.94497 0.86226 0.79242 0.81244 0.78792 1.19936 1.20792 1.19953 1.22831 0.94885 0.91684 1.59151 0.90972 1.85398 1.04891 0.96296 1.96726 1.23530 1.06604 0.95343 1.04932 1.20301 0.86495 0.86238 0.75132 1.90708 1.15359 1.85582 1.47373 1.45902 1.09957 1.05445 1.78169 1.21135 0.95713 0.80409 1.02927 1.22098 0.96592 0.88048 1.01333 1.60416 1.18992 1.02052 1.50432 1.22045 0.92733 0.90920 1.01022 1.20856 0.96960 0.93935 0.99096 0.89672 1.21928 0.99764 0.97760 0.98519 1.21779 0.92795 0.86248 1.00748 1.46007 1.29514 1.40257 1.21954 1.20648 0.79733 0.81513 0.87723 1.90764 1.48865 1.31649 1.72090 1.21980 1.03767 0.97746 0.94320 1.21237 0.97877 0.92179 1.03284 0.92109 0.89172 0.89244 0.76898 0.91903 0.90646 0.90230 0.94554 0.83747 0.90500 0.95054 0.91227 0.89888 0.90214 0.89221 0.76436 0.88992 0.88363 0.90159 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.70 7.85 -10.98 -0.09 9.61 16 12 O -0.52 -11.58 15.86 5.55 0.09 -11.49 16 13 N -0.74 -9.29 5.56 -60.29 -0.33 -9.63 16 14 C 0.12 1.31 5.93 -4.04 -0.02 1.29 16 15 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 16 N -0.69 -4.25 6.48 -113.79 -0.74 -4.99 16 17 C 0.06 0.30 5.09 -3.83 -0.02 0.28 16 18 C -0.09 -0.33 1.93 -91.86 -0.18 -0.51 16 19 H 0.08 0.33 7.87 -51.93 -0.41 -0.08 16 20 C -0.14 -0.46 4.88 -27.38 -0.13 -0.59 16 21 C 0.11 0.29 6.46 -3.70 -0.02 0.27 16 22 N -0.73 -3.59 5.27 -59.93 -0.32 -3.91 16 23 C 0.52 3.97 7.06 -11.25 -0.08 3.89 16 24 O -0.56 -6.90 17.92 5.56 0.10 -6.80 16 25 C -0.14 -0.66 5.57 -27.50 -0.15 -0.82 16 26 C -0.11 -0.44 4.91 -27.31 -0.13 -0.57 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 1.88 6.55 -39.29 -0.26 1.63 16 36 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.08 0.24 6.06 -51.93 -0.31 -0.07 16 40 H 0.08 0.17 6.71 -51.93 -0.35 -0.17 16 41 H 0.09 0.12 8.14 -51.92 -0.42 -0.31 16 42 H 0.40 1.78 8.91 -40.82 -0.36 1.42 16 43 H 0.09 0.29 6.77 -51.93 -0.35 -0.06 16 44 H 0.10 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.08 0.27 8.05 -51.93 -0.42 -0.15 16 46 H 0.07 0.35 7.86 -51.93 -0.41 -0.05 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -37.15 385.16 -9.73 -46.88 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.40 Total: -0.46 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.43 Total: -2.52 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.65 Total: -43.78 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.19 Total: -18.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.15 -9.73 -46.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.948 kcal (2) G-P(sol) polarization free energy of solvation -37.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds