Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72398 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71956 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72206 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99635 * 180.02562 * 7 2 1 9 9 S 1.76192 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47401 * 180.02562 * 14 13 11 16 16 N 1.46901 * 109.47208 * 180.02562 * 15 14 13 17 17 C 1.46897 * 111.00229 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47483 * 179.97438 * 17 16 15 19 19 H 1.09004 * 108.56446 * 57.06330 * 18 17 16 20 20 C 1.51776 * 108.61893 * 299.26139 * 18 17 16 21 21 C 1.52939 * 110.88754 * 171.88965 * 20 18 17 22 22 N 1.47191 * 108.69352 * 86.45535 * 21 20 18 23 23 C 1.33376 * 120.42483 * 288.04884 * 22 21 20 24 24 O 1.21278 * 119.89248 * 180.25313 * 23 22 21 25 25 C 1.51425 * 120.21436 * 0.27570 * 23 22 21 26 26 C 1.51792 * 108.61978 * 174.99954 * 18 17 16 27 27 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 28 28 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 29 29 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 30 30 H 0.97004 * 119.99890 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46943 * 299.99945 * 14 13 11 32 32 H 1.09003 * 109.47001 * 59.99659 * 14 13 11 33 33 H 1.09003 * 109.46848 * 299.99783 * 15 14 13 34 34 H 1.08993 * 109.47154 * 59.99304 * 15 14 13 35 35 H 1.00906 * 110.99883 * 303.95035 * 16 15 14 36 36 H 1.09001 * 109.47055 * 300.00038 * 17 16 15 37 37 H 1.09002 * 109.47139 * 59.99060 * 17 16 15 38 38 H 1.09004 * 109.19669 * 292.24334 * 20 18 17 39 39 H 1.09002 * 109.19711 * 51.51971 * 20 18 17 40 40 H 1.08995 * 109.59697 * 326.68159 * 21 20 18 41 41 H 1.09011 * 109.72668 * 206.29088 * 21 20 18 42 42 H 0.96995 * 119.79136 * 108.02684 * 22 21 20 43 43 H 1.08998 * 109.63497 * 311.51994 * 25 23 22 44 44 H 1.09004 * 109.62947 * 190.91941 * 25 23 22 45 45 H 1.09005 * 109.21852 * 308.25669 * 26 18 17 46 46 H 1.09002 * 109.22180 * 67.60355 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1091 1.6935 -1.2092 5 1 1.2853 2.7464 -0.0069 6 1 3.0989 1.6995 1.2159 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0128 10 6 2.5160 -3.8913 0.0180 11 6 1.9875 -5.3026 0.0250 12 8 0.7912 -5.5022 0.0258 13 7 2.8443 -6.3430 0.0292 14 6 2.3306 -7.7149 0.0354 15 6 3.5027 -8.6984 0.0400 16 7 2.9876 -10.0741 0.0456 17 6 4.0873 -11.0480 0.0507 18 6 3.5128 -12.4660 0.0570 19 1 2.8622 -12.5807 -0.8100 20 6 2.6787 -12.6452 1.3123 21 6 1.9175 -13.9712 1.2764 22 7 2.7892 -15.0302 1.8105 23 6 3.8305 -15.4692 1.1020 24 8 4.5397 -16.3453 1.5493 25 6 4.1303 -14.8767 -0.2589 26 6 4.6590 -13.4538 -0.0632 27 1 -0.4851 0.8400 -0.0041 28 1 3.1245 -3.7353 -0.8727 29 1 3.1245 -3.7272 0.9073 30 1 3.8011 -6.1834 0.0274 31 1 1.7223 -7.8711 0.9264 32 1 1.7216 -7.8789 -0.8536 33 1 4.1113 -8.5423 -0.8508 34 1 4.1113 -8.5342 0.9291 35 1 2.3678 -10.2250 0.8274 36 1 4.7006 -10.9081 -0.8395 37 1 4.6994 -10.9003 0.9404 38 1 3.3341 -12.6319 2.1832 39 1 1.9655 -11.8245 1.3890 40 1 1.6427 -14.2073 0.2484 41 1 1.0177 -13.8956 1.8872 42 1 2.6054 -15.4111 2.6834 43 1 3.2185 -14.8498 -0.8556 44 1 4.8840 -15.4813 -0.7635 45 1 5.2797 -13.1811 -0.9167 46 1 5.2616 -13.4165 0.8444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = -119.121202 kcal Electronic energy + Delta-G solvation = -24468.297041 eV Core-core repulsion = 20709.889305 eV Total energy + Delta-G solvation = -3758.407736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23994 -40.60121 -38.84687 -37.11461 -35.70139 -34.57843 -34.47735 -32.29678 -31.29316 -29.47662 -27.79963 -27.42559 -25.01690 -24.07741 -23.08108 -21.76599 -21.06804 -20.59505 -19.82355 -18.24696 -17.90025 -17.77537 -17.31594 -17.08643 -16.86524 -16.50395 -16.04056 -15.80825 -15.65785 -15.33960 -15.08706 -14.77333 -14.65341 -14.48542 -14.14114 -14.04360 -13.62652 -13.50477 -13.28697 -13.15874 -13.06674 -12.85798 -12.64874 -12.55641 -12.43812 -12.37188 -11.76169 -11.65595 -11.53892 -11.35446 -11.11818 -10.97644 -10.83425 -10.26768 -10.11694 -10.10717 -9.39696 -8.65614 -8.33368 -6.11594 1.27813 1.44947 1.47876 1.57411 1.62330 1.63616 2.21961 2.29280 2.40804 3.00755 3.23375 3.37922 3.54647 3.79263 3.81498 3.88331 3.95103 4.07394 4.14990 4.29143 4.32460 4.38328 4.50984 4.52746 4.52815 4.56205 4.62645 4.67798 4.81716 4.89861 4.96718 5.00499 5.02731 5.11574 5.15641 5.28715 5.42562 5.43353 5.47066 5.88105 6.00620 6.20668 6.29677 6.42524 6.51375 7.07850 7.24456 7.25622 8.75542 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.047362 B = 0.001430 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.047130 B =19576.429478 C =19896.999312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.712 5.712 14 C 0.124 3.876 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.065 3.935 18 C -0.083 4.083 19 H 0.091 0.909 20 C -0.138 4.138 21 C 0.106 3.894 22 N -0.717 5.717 23 C 0.510 3.490 24 O -0.614 6.614 25 C -0.133 4.133 26 C -0.101 4.101 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.347 0.653 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.401 0.599 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -28.542 0.343 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.367 5.367 14 C 0.000 4.000 15 C -0.068 4.068 16 N -0.325 5.325 17 C -0.064 4.064 18 C -0.102 4.102 19 H 0.109 0.891 20 C -0.177 4.177 21 C -0.017 4.017 22 N -0.366 5.366 23 C 0.298 3.702 24 O -0.496 6.496 25 C -0.173 4.173 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.237 0.763 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.799 -29.167 -0.303 30.467 hybrid contribution 2.102 1.261 1.417 2.831 sum 10.901 -27.907 1.114 29.981 Atomic orbital electron populations 1.70172 1.07977 1.28671 1.47913 1.26117 0.95942 1.03286 0.93707 0.85013 0.77808 0.75737 0.79484 1.18649 1.20445 1.18689 1.23186 0.95386 0.92040 1.59014 0.89850 1.85579 1.10632 0.99249 1.97064 1.23373 1.03530 0.94309 1.06883 1.20052 0.86208 0.86695 0.75124 1.90697 1.17480 1.86111 1.50144 1.45619 1.10363 1.05108 1.75583 1.21228 0.97095 0.79747 1.01931 1.21946 0.94939 0.87712 1.02246 1.60406 1.19553 1.01659 1.50838 1.22044 0.92317 0.91020 1.01034 1.20802 0.96797 0.93091 0.99498 0.89098 1.21896 0.99689 0.98233 0.97854 1.21988 0.92787 0.85103 1.01797 1.46082 1.28827 1.40005 1.21734 1.21191 0.79534 0.80821 0.88685 1.90732 1.51000 1.34369 1.73540 1.21980 1.04711 0.97749 0.92812 1.21189 0.97961 0.91770 1.03061 0.91997 0.87108 0.87132 0.74614 0.92509 0.92144 0.89472 0.93435 0.83288 0.90325 0.95196 0.92279 0.89165 0.89034 0.87341 0.76325 0.86850 0.88761 0.89027 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.54 13.22 21.65 0.29 -55.26 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 11 C 0.53 18.92 7.85 87.66 0.69 19.61 16 12 O -0.57 -25.71 15.86 -3.04 -0.05 -25.75 16 13 N -0.71 -16.29 5.56 -463.06 -2.57 -18.86 16 14 C 0.12 2.43 5.93 86.38 0.51 2.94 16 15 C 0.06 0.71 5.80 86.30 0.50 1.21 16 16 N -0.69 -6.81 6.48 -513.91 -3.33 -10.14 16 17 C 0.06 0.47 5.09 86.30 0.44 0.91 16 18 C -0.08 -0.43 1.93 -11.60 -0.02 -0.45 16 19 H 0.09 0.43 7.87 -2.39 -0.02 0.41 16 20 C -0.14 -0.61 4.88 30.17 0.15 -0.46 16 21 C 0.11 0.34 6.46 86.23 0.56 0.90 16 22 N -0.72 -6.46 5.27 -462.68 -2.44 -8.90 16 23 C 0.51 7.71 7.06 88.11 0.62 8.34 16 24 O -0.61 -15.88 17.92 -3.02 -0.05 -15.93 16 25 C -0.13 -1.12 5.57 30.10 0.17 -0.95 16 26 C -0.10 -0.67 4.91 30.22 0.15 -0.52 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.75 16 30 H 0.42 6.47 8.47 -92.71 -0.79 5.69 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.35 2.98 6.55 -89.69 -0.59 2.39 16 36 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 37 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.06 0.42 8.05 -2.38 -0.02 0.40 16 39 H 0.09 0.30 6.06 -2.39 -0.01 0.29 16 40 H 0.09 0.14 6.71 -2.39 -0.02 0.12 16 41 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 42 H 0.40 3.40 8.91 -92.71 -0.83 2.58 16 43 H 0.11 0.45 6.77 -2.39 -0.02 0.44 16 44 H 0.09 0.89 8.13 -2.38 -0.02 0.87 16 45 H 0.09 0.42 8.05 -2.38 -0.02 0.40 16 46 H 0.05 0.51 7.86 -2.39 -0.02 0.49 16 Total: -1.00 -84.01 385.16 -3.17 -87.18 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -1.19 Total: 14.20 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.31 Total: -2.03 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -8.06 Total: -93.16 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.10 Total: -41.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -84.01 -3.17 -87.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.942 kcal (2) G-P(sol) polarization free energy of solvation -84.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds