Wall clock time and date at job start Tue Mar 31 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35440 * 120.42930 * 2 1 4 4 C 1.41206 * 119.19417 * 180.02562 * 3 2 1 5 5 C 1.48228 * 119.90734 * 179.97438 * 4 3 2 6 6 O 1.21507 * 120.00671 * 343.88362 * 5 4 3 7 7 N 1.34787 * 119.99615 * 163.87776 * 5 4 3 8 8 C 1.47081 * 120.87781 * 180.23967 * 7 5 4 9 9 C 1.53699 * 108.27502 * 128.76058 * 8 7 5 10 10 N 1.46899 * 109.25886 * 54.07671 * 9 8 7 11 11 C 1.46897 * 110.99662 * 172.60818 * 10 9 8 12 12 C 1.50697 * 109.47455 * 294.30108 * 11 10 9 13 13 H 1.07999 * 119.99686 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00020 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00081 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47353 * 119.99783 * 16 14 12 19 19 H 1.48501 * 109.46860 * 240.00133 * 16 14 12 20 20 C 1.46903 * 111.26711 * 296.75902 * 10 9 8 21 21 C 1.47075 * 120.88194 * 0.52126 * 7 5 4 22 22 N 1.31988 * 120.17960 * 359.93821 * 4 3 2 23 23 C 1.33613 * 120.89547 * 0.02562 * 22 4 3 24 24 N 1.32735 * 131.83639 * 180.02562 * 23 22 4 25 25 C 1.33297 * 109.21927 * 179.97438 * 24 23 22 26 26 C 1.35390 * 108.64999 * 359.97438 * 25 24 23 27 27 N 1.36400 * 107.14846 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46649 * 270.04174 * 1 2 3 29 29 H 1.08996 * 109.47106 * 30.03895 * 1 2 3 30 30 H 1.09002 * 109.47331 * 150.04643 * 1 2 3 31 31 H 1.07997 * 120.40663 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.62756 * 248.52370 * 8 7 5 33 33 H 1.09000 * 109.62952 * 9.10118 * 8 7 5 34 34 H 1.09001 * 109.64095 * 294.07352 * 9 8 7 35 35 H 1.08999 * 109.41943 * 173.94803 * 9 8 7 36 36 H 1.08999 * 109.47061 * 54.30773 * 11 10 9 37 37 H 1.09005 * 109.46875 * 174.30388 * 11 10 9 38 38 H 0.96997 * 120.00053 * 180.02562 * 15 14 12 39 39 H 1.08992 * 109.49490 * 303.14213 * 20 10 9 40 40 H 1.09001 * 109.48879 * 183.06113 * 20 10 9 41 41 H 1.09003 * 109.62580 * 350.89168 * 21 7 5 42 42 H 1.08991 * 109.63129 * 111.47106 * 21 7 5 43 43 H 1.07998 * 125.67682 * 180.02562 * 25 24 23 44 44 H 1.07997 * 126.42480 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1930 1.1678 0.0000 4 6 3.6047 1.1374 -0.0006 5 6 4.3713 2.4061 -0.0011 6 8 3.8203 3.4489 -0.2932 7 7 5.6797 2.4029 0.3225 8 6 6.4577 3.6511 0.3333 9 6 7.1869 3.7529 1.6825 10 7 7.9715 2.5307 1.9026 11 6 8.8206 2.6579 3.0945 12 6 9.8606 3.7228 2.8591 13 1 9.8877 4.2525 1.9183 14 6 10.7774 4.0209 3.8448 15 7 10.7447 3.3755 4.9902 16 14 12.0661 5.3414 3.5532 17 1 11.8906 5.9128 2.1939 18 1 11.9115 6.4162 4.5662 19 1 13.4210 4.7445 3.6676 20 6 7.1028 1.3499 1.9986 21 6 6.3689 1.1504 0.6682 22 7 4.2435 -0.0176 0.0002 23 6 3.5722 -1.1729 0.0009 24 7 3.9825 -2.4352 0.0022 25 6 2.9210 -3.2416 0.0030 26 6 1.8003 -2.4820 0.0029 27 7 2.1986 -1.1774 0.0013 28 1 -0.3633 0.0007 1.0278 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3634 -0.8904 -0.5131 31 1 1.6667 2.1109 -0.0004 32 1 7.1844 3.6366 -0.4790 33 1 5.7868 4.5017 0.2129 34 1 6.4582 3.8670 2.4851 35 1 7.8530 4.6156 1.6702 36 1 8.2056 2.9336 3.9511 37 1 9.3136 1.7061 3.2926 38 1 11.3894 3.5855 5.6837 39 1 6.3754 1.4974 2.7968 40 1 7.7081 0.4698 2.2155 41 1 5.6392 0.3470 0.7696 42 1 7.0871 0.9002 -0.1124 43 1 2.9502 -4.3211 0.0045 44 1 0.7819 -2.8416 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154432001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:35 Heat of formation + Delta-G solvation = 108.758534 kcal Electronic energy + Delta-G solvation = -27901.259219 eV Core-core repulsion = 24049.581890 eV Total energy + Delta-G solvation = -3851.677329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.46701 -40.36129 -38.39899 -37.43613 -35.92098 -34.34076 -32.37041 -31.98169 -30.84245 -30.06924 -28.79135 -28.25453 -25.86310 -24.77027 -23.83009 -23.01184 -22.05066 -21.52296 -20.78748 -19.41920 -18.72196 -17.83147 -16.96732 -16.86905 -16.34167 -16.02189 -15.30430 -14.99155 -14.86190 -14.68676 -14.38201 -14.12417 -14.10885 -14.03134 -13.73223 -13.63419 -13.49661 -13.08243 -12.98224 -12.59139 -12.16297 -11.94200 -11.83757 -11.29868 -11.18159 -10.86288 -10.74446 -10.68632 -10.55245 -10.53415 -10.40921 -9.91802 -9.55589 -9.41526 -9.10720 -8.57121 -8.44573 -8.40413 -7.26673 -6.02729 -4.04362 -0.15029 0.49191 1.91336 2.20354 2.63368 2.72133 3.13277 3.31800 3.38118 3.39351 3.44073 3.69822 3.95546 4.14184 4.42956 4.52110 4.54874 4.72315 4.84286 4.90182 4.96322 5.09693 5.12127 5.17639 5.33099 5.42661 5.51467 5.67423 5.71143 5.78167 5.89375 5.97693 6.01260 6.13255 6.35016 6.39889 6.49932 6.57143 6.71299 7.03859 7.27939 7.32593 7.42616 7.50428 7.79154 8.00976 8.06658 8.17119 8.52648 9.03340 9.60115 11.08189 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.002699 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.877788 B =10370.206169 C =11206.947829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.136 3.864 3 C -0.161 4.161 4 C 0.166 3.834 5 C 0.567 3.433 6 O -0.535 6.535 7 N -0.575 5.575 8 C 0.112 3.888 9 C 0.052 3.948 10 N -0.536 5.536 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.041 3.959 21 C 0.076 3.924 22 N -0.395 5.395 23 C 0.368 3.632 24 N -0.459 5.459 25 C 0.053 3.947 26 C -0.094 4.094 27 N -0.388 5.388 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.176 0.824 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.099 0.901 36 H -0.010 1.010 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.191 0.809 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.247 -10.192 -10.626 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.023 3.977 3 C -0.184 4.184 4 C -0.001 4.001 5 C 0.351 3.649 6 O -0.412 6.412 7 N -0.306 5.306 8 C -0.010 4.010 9 C -0.077 4.077 10 N -0.261 5.261 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.089 4.089 21 C -0.046 4.046 22 N -0.112 5.112 23 C 0.021 3.979 24 N -0.181 5.181 25 C -0.102 4.102 26 C -0.227 4.227 27 N -0.065 5.065 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.193 0.807 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.117 0.883 36 H 0.008 0.992 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.100 0.900 41 H 0.156 0.844 42 H 0.096 0.904 43 H 0.208 0.792 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.380 -10.194 -11.008 26.944 hybrid contribution -1.242 0.857 0.832 1.724 sum -23.623 -9.337 -10.176 27.363 Atomic orbital electron populations 1.21020 0.86361 1.05350 1.04733 1.20786 0.96058 0.83402 0.97490 1.21422 0.93455 0.98688 1.04862 1.21802 0.91977 0.91628 0.94689 1.17562 0.82010 0.86217 0.79066 1.90785 1.69225 1.30984 1.50199 1.48211 1.07874 1.10869 1.63597 1.22131 0.94183 0.85343 0.99354 1.22415 0.95748 0.95762 0.93789 1.62111 1.20218 1.00764 1.43050 1.19730 0.90959 0.97841 0.84658 1.21190 1.13504 1.19306 1.00615 0.91717 1.24997 0.97820 0.96747 0.95072 1.69968 1.36742 1.41692 1.05377 0.86442 0.81354 0.81417 0.78215 1.19601 1.21151 1.21018 1.22446 0.95274 0.96023 0.95116 1.23222 0.98069 0.86134 0.97215 1.67936 1.34062 0.95393 1.13788 1.22186 0.76459 0.93621 1.05598 1.70760 1.29432 0.96037 1.21845 1.22747 0.86658 1.00348 1.00412 1.22684 1.02070 0.80636 1.17320 1.44007 1.10624 1.06414 1.45477 0.88734 0.88215 0.89969 0.80705 0.90237 0.89132 0.95718 0.88321 0.99189 0.95000 0.92968 0.95999 0.89980 0.84368 0.90390 0.79183 0.79559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 9.90 36.01 0.36 -0.04 16 2 C 0.14 1.09 6.81 -81.49 -0.56 0.53 16 3 C -0.16 -1.57 9.23 -39.45 -0.36 -1.94 16 4 C 0.17 2.21 6.61 -82.57 -0.55 1.66 16 5 C 0.57 8.76 7.67 -12.15 -0.09 8.67 16 6 O -0.54 -8.99 15.94 5.36 0.09 -8.90 16 7 N -0.58 -9.39 3.00 -173.15 -0.52 -9.91 16 8 C 0.11 1.85 6.63 -3.36 -0.02 1.83 16 9 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 10 N -0.54 -11.67 4.62 -235.47 -1.09 -12.76 16 11 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 12 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 13 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 21 C 0.08 1.24 6.17 -3.61 -0.02 1.22 16 22 N -0.40 -5.66 6.30 -10.28 -0.06 -5.72 16 23 C 0.37 4.97 8.91 -322.54 -2.87 2.10 16 24 N -0.46 -6.20 11.31 -14.44 -0.16 -6.36 16 25 C 0.05 0.47 11.83 -17.93 -0.21 0.26 16 26 C -0.09 -0.70 11.14 -16.54 -0.18 -0.88 16 27 N -0.39 -3.86 2.94 -60.22 -0.18 -4.04 16 28 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.10 0.20 8.09 -51.93 -0.42 -0.22 16 30 H 0.08 0.18 7.59 -51.93 -0.39 -0.22 16 31 H 0.18 1.38 7.78 -52.49 -0.41 0.97 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.43 7.06 -51.93 -0.37 1.06 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 36 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 37 H 0.03 0.89 7.97 -51.93 -0.41 0.48 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 1.53 7.99 -51.93 -0.41 1.11 16 41 H 0.14 2.21 3.92 -85.86 -0.34 1.88 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.19 0.58 7.85 -52.49 -0.41 0.17 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -34.84 360.06 -11.73 -46.57 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.98 Total: -2.06 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -4.97 Total: 7.20 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.28 Total: -64.86 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.84 -11.73 -46.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154432001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.329 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds