Wall clock time and date at job start Tue Mar 31 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48496 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46931 * 300.00418 * 3 2 1 6 6 H 1.48504 * 109.46797 * 60.00328 * 3 2 1 7 7 C 1.38799 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00443 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99707 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00070 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00330 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00132 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47036 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46812 * 179.97438 * 15 14 13 17 17 N 1.46908 * 109.47040 * 180.02562 * 16 15 14 18 18 C 1.46894 * 110.99811 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.46921 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47601 * 179.97438 * 19 18 17 21 21 C 1.46768 * 124.34879 * 89.99607 * 20 19 18 22 22 C 1.54480 * 105.55098 * 197.08340 * 21 20 19 23 23 C 1.54631 * 101.76472 * 334.54015 * 22 21 20 24 24 C 1.34621 * 124.47196 * 270.02849 * 20 19 18 25 25 O 1.21286 * 124.90539 * 359.55259 * 24 20 19 26 26 H 0.96994 * 119.99445 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47228 * 60.00102 * 10 9 7 28 28 H 1.08996 * 109.47307 * 299.99718 * 10 9 7 29 29 H 0.97002 * 120.00022 * 0.02562 * 13 11 10 30 30 H 1.09007 * 109.46608 * 60.00214 * 14 13 11 31 31 H 1.08996 * 109.47032 * 300.00096 * 14 13 11 32 32 H 1.08999 * 109.47041 * 60.00307 * 15 14 13 33 33 H 1.08997 * 109.47266 * 300.00536 * 15 14 13 34 34 H 1.08999 * 109.47065 * 60.00323 * 16 15 14 35 35 H 1.08997 * 109.47643 * 300.00306 * 16 15 14 36 36 H 1.00906 * 110.99749 * 303.95601 * 17 16 15 37 37 H 1.08994 * 109.47610 * 60.00272 * 18 17 16 38 38 H 1.08998 * 109.47538 * 299.99652 * 18 17 16 39 39 H 1.09002 * 109.47341 * 59.99869 * 19 18 17 40 40 H 1.08998 * 109.47560 * 299.99749 * 19 18 17 41 41 H 1.09002 * 110.24468 * 78.03845 * 21 20 19 42 42 H 1.09002 * 110.24463 * 316.12602 * 21 20 19 43 43 H 1.08995 * 110.97082 * 92.66028 * 22 21 20 44 44 H 1.09001 * 110.96924 * 216.42557 * 22 21 20 45 45 H 1.09000 * 110.48694 * 143.47575 * 23 22 21 46 46 H 1.08994 * 110.49106 * 266.12244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 6 3.5025 -8.6986 -0.0009 16 6 2.9659 -10.1314 -0.0003 17 7 4.0912 -11.0757 0.0002 18 6 3.6129 -12.4646 0.0001 19 6 4.8108 -13.4165 0.0000 20 7 4.3339 -14.8017 0.0006 21 6 4.0638 -15.5850 -1.2108 22 6 3.1923 -16.7741 -0.7494 23 6 3.5977 -16.9040 0.7371 24 6 4.0857 -15.5216 1.1107 25 8 4.2320 -15.1197 2.2457 26 1 -0.4849 0.8400 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7314 -0.8905 29 1 3.8010 -6.1835 0.0003 30 1 1.7221 -7.8752 -0.8911 31 1 1.7215 -7.8751 0.8889 32 1 4.1111 -8.5386 0.8890 33 1 4.1111 -8.5384 -0.8909 34 1 2.3570 -10.2917 -0.8901 35 1 2.3575 -10.2912 0.8898 36 1 4.7065 -10.9054 -0.7813 37 1 3.0092 -12.6410 -0.8900 38 1 3.0085 -12.6408 0.8899 39 1 5.4150 -13.2403 0.8899 40 1 5.4149 -13.2403 -0.8900 41 1 4.9973 -15.9466 -1.6421 42 1 3.5222 -14.9802 -1.9381 43 1 2.1319 -16.5409 -0.8456 44 1 3.4429 -17.6792 -1.3026 45 1 2.7363 -17.1815 1.3446 46 1 4.3980 -17.6349 0.8519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154815258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:47 Heat of formation + Delta-G solvation = -80.115035 kcal Electronic energy + Delta-G solvation = -23836.341962 eV Core-core repulsion = 20079.625661 eV Total energy + Delta-G solvation = -3756.716301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84034 -39.17865 -37.50478 -36.80802 -35.16297 -33.52096 -32.42055 -31.53791 -29.38362 -28.12703 -27.86769 -25.50952 -24.50485 -22.87409 -22.46236 -21.77139 -20.29249 -19.80721 -17.82017 -17.37865 -17.16892 -16.56989 -16.24144 -15.98295 -15.91776 -15.49143 -14.87724 -14.79741 -14.58209 -14.33188 -14.28265 -13.88248 -13.83205 -13.72023 -13.26985 -13.10168 -12.94239 -12.59240 -12.41411 -12.14821 -11.99146 -11.86271 -11.73072 -11.66971 -11.57629 -11.10385 -11.05768 -11.01017 -10.74752 -10.25999 -9.79725 -9.40443 -9.28758 -9.07020 -8.94038 -8.85884 -8.22051 -6.49005 -6.21002 -3.91404 2.09484 2.39404 3.03846 3.11875 3.22236 3.28726 3.33329 3.64102 3.78023 3.86483 3.89775 4.19054 4.21185 4.38983 4.48540 4.53884 4.70892 4.80123 4.84639 4.86383 4.91140 4.94557 5.09650 5.14306 5.19011 5.21851 5.24096 5.32862 5.34480 5.40625 5.45089 5.53666 5.66644 5.86875 5.93966 5.96626 6.00476 6.15504 6.46302 6.58155 6.64350 6.87636 7.60775 7.68544 7.72868 8.36352 8.63236 9.24515 10.86551 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.046892 B = 0.001282 C = 0.001275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.978272 B =21829.140550 C =21955.072730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.123 3.877 15 C -0.128 4.128 16 C 0.064 3.936 17 N -0.686 5.686 18 C 0.044 3.956 19 C 0.128 3.872 20 N -0.622 5.622 21 C 0.100 3.900 22 C -0.133 4.133 23 C -0.155 4.155 24 C 0.514 3.486 25 O -0.526 6.526 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.341 0.659 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -35.107 -5.042 37.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.066 4.066 17 N -0.318 5.318 18 C -0.086 4.086 19 C 0.006 3.994 20 N -0.357 5.357 21 C -0.023 4.023 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.302 3.698 25 O -0.401 6.401 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.655 -35.033 -3.750 36.532 hybrid contribution 2.088 1.277 -1.065 2.670 sum 11.743 -33.756 -4.815 36.063 Atomic orbital electron populations 1.70031 1.05961 1.27332 1.46989 1.24993 0.95019 0.99029 0.94537 0.86115 0.79594 0.81880 0.77894 1.19608 1.20574 1.20563 1.22915 0.94953 0.91643 1.58800 0.90864 1.85403 1.05014 0.96367 1.96712 1.23530 1.06537 0.95385 1.04942 1.20319 0.86530 0.86324 0.75144 1.90702 1.15405 1.85645 1.47540 1.45982 1.09963 1.05484 1.77949 1.21177 0.95886 0.80783 1.02381 1.21739 0.98155 0.93302 1.03455 1.21845 0.92336 0.91045 1.01329 1.60331 1.19209 1.02171 1.50063 1.22303 0.97050 0.87982 1.01308 1.21290 0.95791 0.78409 1.03939 1.48301 1.67045 1.12948 1.07379 1.22111 0.99806 0.92872 0.87498 1.22605 1.00678 0.98586 0.95175 1.22339 1.03753 0.95727 0.97745 1.21053 0.76666 0.87704 0.84379 1.90766 1.52686 1.75644 1.21050 0.92244 0.89175 0.89232 0.76786 0.91801 0.91533 0.90183 0.91338 0.94702 0.90402 0.84168 0.94989 0.90463 0.88914 0.90369 0.90891 0.90355 0.89855 0.88993 0.87909 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.07 7.85 -10.99 -0.09 9.98 16 12 O -0.52 -12.01 15.86 5.55 0.09 -11.93 16 13 N -0.74 -9.91 5.56 -60.29 -0.33 -10.25 16 14 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 15 C -0.13 -1.02 5.59 -26.73 -0.15 -1.17 16 16 C 0.06 0.49 5.69 -3.82 -0.02 0.47 16 17 N -0.69 -4.75 6.50 -113.78 -0.74 -5.49 16 18 C 0.04 0.30 6.01 -3.83 -0.02 0.27 16 19 C 0.13 0.77 6.20 -4.04 -0.03 0.75 16 20 N -0.62 -3.71 2.94 -172.35 -0.51 -4.22 16 21 C 0.10 0.26 7.34 -3.12 -0.02 0.24 16 22 C -0.13 -0.23 7.18 -25.10 -0.18 -0.41 16 23 C -0.16 -0.62 6.86 -26.74 -0.18 -0.80 16 24 C 0.51 4.25 8.03 -10.77 -0.09 4.16 16 25 O -0.53 -6.86 17.60 5.55 0.10 -6.76 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.34 1.80 8.73 -39.29 -0.34 1.46 16 37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 44 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 400.36 15.07 6.03 6.03 Total: -1.00 -38.01 400.36 -10.08 -48.08 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.83 Total: -1.38 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.38 Total: -1.08 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.85 Total: -45.55 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.19 Total: -18.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.01 -10.08 -48.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.031 kcal (2) G-P(sol) polarization free energy of solvation -38.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds