Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48493 * 109.47214 * 264.61637 * 3 2 1 5 5 H 1.48504 * 109.46837 * 24.61707 * 3 2 1 6 6 H 1.48501 * 109.47254 * 144.61282 * 3 2 1 7 7 C 1.38812 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 356.72061 * 7 2 1 9 9 N 1.36938 * 120.00211 * 176.71459 * 7 2 1 10 10 C 1.46502 * 120.00067 * 183.98364 * 9 7 2 11 11 C 1.53004 * 109.46927 * 185.12188 * 10 9 7 12 12 C 1.52995 * 115.55298 * 64.92224 * 11 10 9 13 13 C 1.53004 * 109.47156 * 39.96778 * 12 11 10 14 14 N 1.46501 * 109.46741 * 174.40432 * 13 12 11 15 15 C 1.34777 * 119.99305 * 184.44796 * 14 13 12 16 16 O 1.21567 * 120.00222 * 354.47481 * 15 14 13 17 17 C 1.47721 * 119.99493 * 174.47618 * 15 14 13 18 18 C 1.40251 * 119.88469 * 359.97438 * 17 15 14 19 19 C 1.36156 * 120.56131 * 179.72522 * 18 17 15 20 20 C 1.39919 * 119.97700 * 0.25256 * 19 18 17 21 21 N 1.34739 * 134.59260 * 180.02562 * 20 19 18 22 22 N 1.28642 * 109.29302 * 180.02562 * 21 20 19 23 23 N 1.28817 * 111.79395 * 359.97438 * 22 21 20 24 24 H 0.97000 * 125.94591 * 180.02562 * 23 22 21 25 25 C 1.37373 * 108.11106 * 359.97438 * 23 22 21 26 26 C 1.38615 * 134.89015 * 180.02562 * 25 23 22 27 27 C 1.52999 * 117.51202 * 210.62637 * 11 10 9 28 28 C 1.52995 * 60.00078 * 107.47723 * 27 11 10 29 29 H 0.97004 * 120.00055 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99958 * 3.97544 * 9 7 2 31 31 H 1.08995 * 109.47069 * 65.11581 * 10 9 7 32 32 H 1.08999 * 109.46518 * 305.11822 * 10 9 7 33 33 H 1.09004 * 109.46736 * 279.96842 * 12 11 10 34 34 H 1.08993 * 109.47240 * 159.96927 * 12 11 10 35 35 H 1.08991 * 109.47119 * 54.40284 * 13 12 11 36 36 H 1.08996 * 109.47053 * 294.40256 * 13 12 11 37 37 H 0.96995 * 120.00288 * 4.44777 * 14 13 12 38 38 H 1.08004 * 119.71893 * 0.02562 * 18 17 15 39 39 H 1.07996 * 120.01638 * 180.27936 * 19 18 17 40 40 H 1.08006 * 120.24255 * 359.97048 * 26 25 23 41 41 H 1.09009 * 117.49382 * 214.96519 * 27 11 10 42 42 H 1.08994 * 117.50155 * 359.97438 * 27 11 10 43 43 H 1.09001 * 117.50156 * 252.50559 * 28 27 11 44 44 H 1.09005 * 117.49944 * 107.48441 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6115 1.9807 -1.3938 5 1 1.3954 2.6828 0.5832 6 1 3.4862 1.4757 0.8108 7 6 2.0103 -1.2021 0.0005 8 1 1.4716 -2.1367 0.0545 9 7 3.3779 -1.2031 -0.0674 10 6 4.1061 -2.4714 -0.1549 11 6 5.6107 -2.2012 -0.0897 12 6 6.1196 -1.6169 1.2296 13 6 5.3997 -2.2930 2.3982 14 7 5.9798 -1.8315 3.6618 15 6 5.5627 -2.3622 4.8283 16 8 4.6366 -3.1497 4.8412 17 6 6.2309 -1.9871 6.0912 18 6 7.2994 -1.0788 6.0734 19 6 7.9216 -0.7190 7.2299 20 6 7.4992 -1.2609 8.4488 21 7 7.8865 -1.1199 9.7316 22 7 7.1502 -1.8614 10.4818 23 7 6.2721 -2.5105 9.7986 24 1 5.6137 -3.1264 10.1564 25 6 6.4296 -2.1779 8.4750 26 6 5.8004 -2.5391 7.2940 27 6 6.5346 -3.1628 -0.8396 28 6 6.3035 -1.7489 -1.3766 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3641 -0.0577 31 1 3.8659 -2.9640 -1.0971 32 1 3.8161 -3.1148 0.6757 33 1 5.9222 -0.5451 1.2523 34 1 7.1923 -1.7907 1.3141 35 1 5.5145 -3.3740 2.3191 36 1 4.3407 -2.0370 2.3696 37 1 6.6640 -1.1439 3.6589 38 1 7.6284 -0.6574 5.1350 39 1 8.7405 -0.0154 7.2065 40 1 4.9807 -3.2424 7.3073 41 1 7.5052 -3.3791 -0.3931 42 1 6.0708 -3.9883 -1.3793 43 1 5.6876 -1.6441 -2.2698 44 1 7.1220 -1.0351 -1.2834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168079423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = 114.955404 kcal Electronic energy + Delta-G solvation = -26831.649548 eV Core-core repulsion = 22980.240935 eV Total energy + Delta-G solvation = -3851.408612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.63732 -40.16822 -38.55599 -37.65995 -35.03645 -34.27050 -34.07769 -31.59937 -31.10304 -30.93503 -29.81071 -26.32894 -25.40518 -23.88797 -23.32644 -22.76611 -22.45738 -21.84622 -21.05628 -19.29198 -18.81581 -18.41130 -17.42411 -16.99320 -16.68737 -16.31987 -15.57243 -15.36583 -15.00267 -14.61532 -14.56829 -14.44321 -14.06748 -13.75158 -13.49313 -13.23975 -12.63976 -12.62492 -12.56200 -12.38833 -12.27981 -11.94384 -11.69759 -11.60947 -11.48375 -11.22011 -11.18101 -10.91943 -10.76306 -10.28169 -10.09486 -9.90810 -9.60172 -9.49973 -9.49368 -9.08497 -8.87049 -8.85682 -7.21647 -5.75578 -3.10784 -0.09812 0.70000 1.70983 2.02538 2.62731 2.98526 3.36420 3.38979 3.39471 3.44721 3.53579 3.89846 4.12194 4.33793 4.43789 4.56193 4.59790 4.65775 4.78221 4.84723 4.90961 5.02278 5.16605 5.33283 5.38381 5.51636 5.53524 5.60194 5.64966 5.68525 5.74635 5.75730 5.84174 6.04470 6.05892 6.14240 6.23192 6.29013 6.31274 6.32263 6.41867 6.64366 6.71003 7.37020 7.79534 8.01441 8.07686 8.43729 9.22829 9.94811 10.15286 11.42976 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002676 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.398633 B =10459.863381 C =11462.635662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.189 3.811 11 C -0.128 4.128 12 C -0.086 4.086 13 C 0.117 3.883 14 N -0.720 5.720 15 C 0.556 3.444 16 O -0.526 6.526 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.053 4.053 20 C 0.026 3.974 21 N -0.252 5.252 22 N -0.008 5.008 23 N -0.411 5.411 24 H 0.455 0.545 25 C 0.018 3.982 26 C -0.035 4.035 27 C -0.171 4.171 28 C -0.170 4.170 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.397 0.603 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.950 -4.765 12.931 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.394 5.394 10 C 0.062 3.938 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.005 4.005 14 N -0.372 5.372 15 C 0.342 3.658 16 O -0.403 6.403 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.099 4.099 21 N -0.128 5.128 22 N 0.009 4.991 23 N -0.140 5.140 24 H 0.303 0.697 25 C -0.102 4.102 26 C -0.058 4.058 27 C -0.209 4.209 28 C -0.207 4.207 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.662 -5.106 14.295 24.840 hybrid contribution -0.040 1.010 -0.753 1.261 sum 19.622 -4.095 13.542 24.190 Atomic orbital electron populations 1.69704 1.05115 1.25786 1.57585 1.24659 0.95180 0.97134 1.02102 0.86593 0.79216 0.85100 0.77821 1.21052 1.21865 1.20444 1.19049 0.80708 0.94762 1.42659 0.89241 1.42554 1.04022 1.02169 1.90681 1.20223 0.85331 0.89407 0.98810 1.21648 0.95501 1.03730 0.91999 1.21199 0.98654 1.00450 0.92097 1.21580 0.99661 0.99021 0.80241 1.45917 1.42816 1.42053 1.06374 1.17968 0.83155 0.81432 0.83276 1.90837 1.27743 1.34929 1.86791 1.19840 0.97757 0.99367 0.93324 1.20912 0.94829 0.96674 0.98716 1.19930 1.00216 0.99346 0.88058 1.20105 0.96510 0.99440 0.93866 1.75389 1.20149 1.17080 1.00207 1.77992 0.97356 1.02607 1.21100 1.44903 1.28761 1.36096 1.04223 0.69735 1.19659 1.01425 1.02394 0.86700 1.20127 0.98935 0.99088 0.87616 1.23028 1.00127 0.93675 1.04044 1.22970 1.02686 0.97173 0.97867 0.93092 0.80795 0.95657 0.94397 0.90920 0.91747 0.91091 0.88996 0.76758 0.84067 0.83612 0.83262 0.89142 0.88738 0.88411 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.90 27.55 -169.99 -4.68 17.22 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.43 6.79 56.52 0.38 -6.04 16 7 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.11 5.31 -59.91 -0.32 -17.43 16 10 C 0.19 3.50 5.33 -4.04 -0.02 3.48 16 11 C -0.13 -1.78 1.84 -154.51 -0.28 -2.06 16 12 C -0.09 -1.04 5.36 -26.73 -0.14 -1.19 16 13 C 0.12 1.61 4.62 -4.04 -0.02 1.59 16 14 N -0.72 -8.12 5.49 -61.29 -0.34 -8.46 16 15 C 0.56 7.19 7.76 -12.39 -0.10 7.10 16 16 O -0.53 -9.00 16.33 5.31 0.09 -8.91 16 17 C -0.10 -0.96 5.88 -104.92 -0.62 -1.57 16 18 C -0.09 -0.67 9.45 -39.57 -0.37 -1.05 16 19 C -0.05 -0.42 10.03 -39.70 -0.40 -0.82 16 20 C 0.03 0.27 7.36 -84.95 -0.63 -0.36 16 21 N -0.25 -2.90 12.42 32.09 0.40 -2.50 16 22 N -0.01 -0.09 13.28 60.35 0.80 0.72 16 23 N -0.41 -3.14 7.08 32.31 0.23 -2.91 16 24 H 0.46 1.64 8.96 -190.23 -1.71 -0.06 16 25 C 0.02 0.17 7.40 -84.23 -0.62 -0.45 16 26 C -0.03 -0.33 9.61 -39.10 -0.38 -0.71 16 27 C -0.17 -1.95 9.87 -26.73 -0.26 -2.21 16 28 C -0.17 -2.14 9.97 -26.73 -0.27 -2.41 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.36 8.02 5.69 -40.82 -0.23 7.78 16 31 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.04 0.73 6.81 -51.93 -0.35 0.37 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.65 7.16 -51.93 -0.37 1.27 16 37 H 0.40 3.12 6.50 -40.82 -0.27 2.86 16 38 H 0.14 0.65 6.38 -52.48 -0.33 0.31 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.15 1.35 7.63 -52.48 -0.40 0.95 16 41 H 0.09 0.87 8.09 -51.92 -0.42 0.45 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -36.15 371.27 -8.84 -44.99 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.03 Total: 7.89 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -4.36 Total: -7.54 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 1.55 Total: -59.24 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.68 Total: 17.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.15 -8.84 -44.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168079423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.942 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds