Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47533 * 270.00360 * 3 2 1 5 5 H 1.48507 * 109.47002 * 30.00455 * 3 2 1 6 6 H 1.48507 * 109.47063 * 149.99750 * 3 2 1 7 7 C 1.37886 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99754 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00407 * 169.99636 * 10 9 7 12 12 C 1.53235 * 109.34138 * 187.25445 * 11 10 9 13 13 N 1.47078 * 108.52285 * 306.16902 * 12 11 10 14 14 C 1.34779 * 120.88751 * 231.18785 * 13 12 11 15 15 O 1.21278 * 119.99426 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00109 * 179.97438 * 14 13 12 17 17 N 1.46499 * 109.46909 * 180.02562 * 16 14 13 18 18 N 1.28759 * 123.60902 * 269.97845 * 17 16 14 19 19 C 1.32337 * 108.85772 * 180.02562 * 18 17 16 20 20 C 1.40594 * 136.46806 * 179.97438 * 19 18 17 21 21 C 1.35849 * 119.49205 * 180.02562 * 20 19 18 22 22 C 1.39535 * 121.73065 * 0.02562 * 21 20 19 23 23 C 1.35849 * 121.72680 * 359.97438 * 22 21 20 24 24 C 1.40596 * 119.49702 * 359.97438 * 23 22 21 25 25 N 1.28749 * 123.61573 * 89.99713 * 17 16 14 26 26 C 1.47086 * 118.23608 * 51.46112 * 13 12 11 27 27 C 1.46901 * 110.99946 * 294.30145 * 10 9 7 28 28 H 0.97002 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47364 * 59.99828 * 9 7 2 30 30 H 1.09005 * 109.47048 * 299.99912 * 9 7 2 31 31 H 1.08998 * 109.49175 * 67.29323 * 11 10 9 32 32 H 1.09000 * 109.49253 * 307.21798 * 11 10 9 33 33 H 1.09000 * 109.62848 * 186.46078 * 12 11 10 34 34 H 1.08997 * 109.63187 * 65.87954 * 12 11 10 35 35 H 1.09002 * 109.47206 * 60.00254 * 16 14 13 36 36 H 1.08995 * 109.47106 * 299.99672 * 16 14 13 37 37 H 1.07995 * 120.25153 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.13247 * 180.28600 * 21 20 19 39 39 H 1.08001 * 119.13530 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.25580 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.62810 * 68.24809 * 26 13 12 42 42 H 1.09001 * 109.62906 * 188.83716 * 26 13 12 43 43 H 1.08999 * 109.49364 * 292.70261 * 27 10 9 44 44 H 1.09001 * 109.48967 * 52.75865 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2377 12 6 2.5637 -6.0032 0.4105 13 7 3.4614 -5.9863 -0.7544 14 6 3.7118 -7.1124 -1.4513 15 8 3.1936 -8.1579 -1.1207 16 6 4.6345 -7.0722 -2.6421 17 7 4.7409 -8.4129 -3.2229 18 7 5.6275 -9.2759 -2.8661 19 6 5.4585 -10.3807 -3.5748 20 6 6.0754 -11.6412 -3.6603 21 6 5.6038 -12.5579 -4.5449 22 6 4.5181 -12.2836 -5.3774 23 6 3.8776 -11.0860 -5.3448 24 6 4.3136 -10.0918 -4.4513 25 7 3.9583 -8.8545 -4.1449 26 6 4.0837 -4.7091 -1.1349 27 6 2.9766 -3.6492 -1.2505 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 0.8795 -5.1264 -0.6121 32 1 0.9159 -4.8191 1.1412 33 1 2.0631 -6.9694 0.4730 34 1 3.1394 -5.8265 1.3190 35 1 5.6212 -6.7335 -2.3259 36 1 4.2358 -6.3843 -3.3876 37 1 6.9177 -11.8787 -3.0275 38 1 6.0791 -13.5260 -4.6025 39 1 4.1780 -13.0432 -6.0657 40 1 3.0393 -10.8992 -5.9996 41 1 4.8026 -4.4104 -0.3721 42 1 4.5884 -4.8193 -2.0948 43 1 2.3148 -3.8994 -2.0796 44 1 3.4267 -2.6721 -1.4263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180296899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 117.784213 kcal Electronic energy + Delta-G solvation = -27172.979481 eV Core-core repulsion = 23321.693535 eV Total energy + Delta-G solvation = -3851.285946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.54593 -40.24624 -38.19881 -37.61694 -34.64846 -33.40863 -33.35835 -32.48608 -31.02472 -30.50217 -29.09469 -28.03844 -25.69510 -24.26155 -23.37586 -23.36168 -22.15314 -21.08039 -20.70244 -19.10656 -18.50606 -17.95867 -17.37537 -16.46830 -16.30174 -16.10437 -15.73206 -15.49289 -14.85961 -14.60110 -14.55912 -14.36401 -14.08647 -13.78181 -13.68774 -13.43514 -12.73694 -12.68352 -12.43079 -12.37507 -12.36459 -12.01511 -11.42188 -11.27206 -11.21282 -11.10907 -11.10328 -10.88470 -10.83618 -10.72764 -10.64890 -10.16756 -9.96560 -9.37142 -9.06441 -8.73210 -8.54033 -8.42393 -7.45756 -6.13173 -4.15851 0.23504 1.38309 1.68322 2.15417 2.28337 2.87420 3.24172 3.31508 3.34443 3.45265 3.49097 4.02870 4.27254 4.31693 4.46038 4.50120 4.62352 4.66480 4.91961 5.01213 5.06567 5.19005 5.24104 5.26822 5.30350 5.32170 5.48517 5.58721 5.68135 5.84114 5.86932 5.92814 6.15395 6.17264 6.18297 6.24510 6.29407 6.32347 6.45428 6.50462 7.10426 7.16276 7.21818 7.64917 7.85339 7.90879 8.00579 8.01815 8.37176 8.91014 9.49030 10.97501 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.002122 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.389476 B =13192.695841 C =13349.376230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.120 3.880 13 N -0.599 5.599 14 C 0.505 3.495 15 O -0.530 6.530 16 C 0.113 3.887 17 N -0.088 5.088 18 N -0.268 5.268 19 C 0.022 3.978 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.106 4.106 23 C -0.059 4.059 24 C 0.022 3.978 25 N -0.266 5.266 26 C 0.103 3.897 27 C 0.049 3.951 28 H 0.262 0.738 29 H -0.008 1.008 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.746 -20.293 -9.253 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.333 5.333 14 C 0.289 3.711 15 O -0.406 6.406 16 C -0.011 4.011 17 N 0.013 4.987 18 N -0.116 5.116 19 C -0.129 4.129 20 C -0.082 4.082 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.081 4.081 24 C -0.129 4.129 25 N -0.114 5.114 26 C -0.020 4.020 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.517 -19.278 -8.088 23.868 hybrid contribution -0.247 0.284 -0.910 0.985 sum 11.270 -18.994 -8.999 23.849 Atomic orbital electron populations 1.69953 1.06113 1.26961 1.50495 1.25007 0.94878 0.99420 0.95289 0.86487 0.79795 0.83015 0.78049 1.20711 1.21228 1.19732 1.21110 0.93433 0.89801 1.50691 0.91767 1.19739 0.89965 0.87064 0.96358 1.62092 1.28204 1.02751 1.32988 1.22418 0.94862 0.90384 1.01235 1.21839 0.91606 0.99796 0.86951 1.48173 1.46744 1.08030 1.30346 1.20177 0.82565 0.84366 0.83972 1.90779 1.51282 1.29948 1.68577 1.22029 1.04318 0.77780 0.96966 1.47774 1.16533 1.12419 1.22017 1.74307 1.14773 0.99953 1.22557 1.21511 0.98900 0.95161 0.97307 1.19849 0.99848 0.89060 0.99481 1.20706 0.96955 0.99354 0.95799 1.20704 0.96083 0.96510 0.99610 1.19868 1.00271 0.90921 0.97048 1.21517 0.97799 0.92288 1.01311 1.74334 1.17198 1.12210 1.07631 1.22267 0.96643 0.82562 1.00488 1.22428 0.94980 0.98979 0.91672 0.92794 0.99006 0.94930 0.95367 0.89754 0.89297 0.90393 0.83828 0.83815 0.84849 0.84924 0.84912 0.84810 0.89641 0.90375 0.95399 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.51 -13.41 8.41 -34.44 -0.29 -13.70 16 8 H 0.06 1.63 7.12 -52.49 -0.37 1.26 16 9 C 0.19 4.72 4.72 -4.98 -0.02 4.69 16 10 N -0.54 -10.39 4.62 -235.47 -1.09 -11.48 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.76 6.60 -3.61 -0.02 1.73 16 13 N -0.60 -8.15 3.00 -172.18 -0.52 -8.67 16 14 C 0.50 7.18 7.78 -10.99 -0.09 7.10 16 15 O -0.53 -9.76 15.88 5.56 0.09 -9.67 16 16 C 0.11 1.22 5.31 -5.19 -0.03 1.19 16 17 N -0.09 -1.25 3.42 -11.66 -0.04 -1.29 16 18 N -0.27 -3.92 12.05 33.17 0.40 -3.52 16 19 C 0.02 0.30 7.60 -83.19 -0.63 -0.33 16 20 C -0.06 -0.59 10.08 -39.55 -0.40 -0.99 16 21 C -0.11 -0.78 9.90 -39.95 -0.40 -1.18 16 22 C -0.11 -0.80 9.90 -39.95 -0.40 -1.20 16 23 C -0.06 -0.60 10.08 -39.55 -0.40 -0.99 16 24 C 0.02 0.30 7.60 -83.19 -0.63 -0.33 16 25 N -0.27 -3.99 12.04 33.17 0.40 -3.59 16 26 C 0.10 1.23 6.53 -3.36 -0.02 1.20 16 27 C 0.05 0.79 5.47 -3.46 -0.02 0.78 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 33 H 0.09 1.33 7.06 -51.93 -0.37 0.97 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.14 1.08 7.99 -51.93 -0.41 0.66 16 36 H 0.14 1.19 7.67 -51.93 -0.40 0.79 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.63 6.02 -51.93 -0.31 0.32 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 1.75 6.67 -51.93 -0.35 1.41 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -35.01 365.92 -8.97 -43.98 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.98 Total: -1.96 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -3.46 Total: 0.05 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.11 Total: -53.50 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.01 -8.97 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180296899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.768 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds