Wall clock time and date at job start Tue Mar 31 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.88493 * 34.30115 * 14 13 12 16 16 C 1.55149 * 111.00401 * 270.41606 * 14 13 12 17 17 C 1.54368 * 102.92253 * 206.45331 * 16 14 13 18 18 N 1.47022 * 107.28539 * 22.13745 * 17 16 14 19 19 C 1.34779 * 125.64834 * 181.12656 * 18 17 16 20 20 O 1.21280 * 119.99838 * 179.97438 * 19 18 17 21 21 C 1.50701 * 120.00072 * 359.95999 * 19 18 17 22 22 F 1.39903 * 110.45593 * 312.60760 * 21 19 18 23 23 C 1.54505 * 110.51123 * 190.00008 * 21 19 18 24 24 C 1.54484 * 104.06360 * 241.35671 * 23 21 19 25 25 O 1.44430 * 104.80077 * 23.97624 * 24 23 21 26 26 C 1.44419 * 105.27518 * 319.49054 * 25 24 23 27 27 C 1.47422 * 108.70443 * 1.09613 * 18 17 16 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 1.00902 * 110.99470 * 303.94971 * 13 12 10 33 33 H 1.08994 * 110.72248 * 324.79008 * 16 14 13 34 34 H 1.09002 * 110.71991 * 88.06541 * 16 14 13 35 35 H 1.09004 * 109.84831 * 262.73251 * 17 16 14 36 36 H 1.08994 * 110.03072 * 141.64573 * 17 16 14 37 37 H 1.08998 * 110.51326 * 0.02562 * 23 21 19 38 38 H 1.09001 * 110.51192 * 122.57768 * 23 21 19 39 39 H 1.08993 * 110.37101 * 142.81147 * 24 23 21 40 40 H 1.09002 * 110.37214 * 265.14961 * 24 23 21 41 41 H 1.09000 * 110.37443 * 281.67611 * 26 25 24 42 42 H 1.09008 * 110.37001 * 159.34056 * 26 25 24 43 43 H 1.09000 * 110.36499 * 217.03055 * 27 18 17 44 44 H 1.08994 * 110.36839 * 94.70741 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 1 0.5737 -7.2090 -0.5885 16 6 1.2232 -7.7606 1.4318 17 6 1.1550 -9.2942 1.2699 18 7 1.8796 -9.6360 0.0371 19 6 2.0299 -10.8767 -0.4675 20 8 2.6501 -11.0418 -1.4965 21 6 1.4275 -12.0588 0.2473 22 9 1.7265 -12.0088 1.6130 23 6 1.9354 -13.3810 -0.3701 24 6 0.6539 -14.0685 -0.8913 25 8 -0.2847 -12.9906 -1.0989 26 6 -0.1007 -12.1039 0.0260 27 6 2.4139 -8.3967 -0.5562 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 2.8339 -5.9090 -0.7895 33 1 2.0402 -7.4792 2.0962 34 1 0.2744 -7.3683 1.7980 35 1 0.1155 -9.6120 1.1890 36 1 1.6260 -9.7811 2.1237 37 1 2.6225 -13.1797 -1.1919 38 1 2.4194 -13.9958 0.3888 39 1 0.8548 -14.5831 -1.8309 40 1 0.2699 -14.7683 -0.1490 41 1 -0.6004 -12.5023 0.9090 42 1 -0.4796 -11.1091 -0.2090 43 1 2.3570 -8.4416 -1.6438 44 1 3.4432 -8.2357 -0.2357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185136549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:03 Heat of formation + Delta-G solvation = -146.605419 kcal Electronic energy + Delta-G solvation = -28165.214812 eV Core-core repulsion = 23839.402095 eV Total energy + Delta-G solvation = -4325.812717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.49133 -40.68318 -39.35951 -38.39405 -37.69446 -34.88316 -33.83775 -32.25135 -31.31803 -30.98052 -29.93115 -28.90232 -26.28782 -24.82332 -23.90072 -23.46873 -22.24276 -20.75746 -19.97244 -19.27620 -18.02200 -17.92741 -17.47140 -17.01933 -16.74465 -16.14380 -15.88556 -15.50721 -15.24539 -15.18219 -14.99560 -14.54709 -14.26540 -14.06700 -13.89967 -13.75098 -13.65817 -13.27100 -13.21747 -12.77395 -12.63168 -12.39831 -12.14269 -12.08919 -11.76152 -11.72269 -11.49343 -11.33971 -11.26850 -11.08282 -10.90852 -10.60529 -10.41211 -10.24511 -10.11579 -9.53936 -9.04697 -8.53968 -8.20667 -7.99638 -6.44564 -3.85525 1.95829 2.32974 3.16169 3.24434 3.25194 3.31114 3.42814 3.67013 3.79238 3.86548 3.99712 4.22977 4.24257 4.35662 4.47497 4.49912 4.60698 4.77656 4.88427 4.97630 4.99691 5.06570 5.13913 5.17741 5.19302 5.25622 5.33357 5.48666 5.54108 5.61738 5.73668 5.74645 5.83585 5.90424 6.02323 6.06818 6.22975 6.98991 7.09532 7.49863 7.52765 7.56258 8.02981 8.57581 9.14865 9.50615 10.01672 10.73062 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.037125 B = 0.001937 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.031053 B =14449.062463 C =14570.913557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.655 5.655 14 C 0.073 3.927 15 H 0.062 0.938 16 C -0.122 4.122 17 C 0.093 3.907 18 N -0.605 5.605 19 C 0.524 3.476 20 O -0.516 6.516 21 C 0.075 3.925 22 F -0.181 7.181 23 C -0.172 4.172 24 C 0.047 3.953 25 O -0.358 6.358 26 C 0.036 3.964 27 C 0.105 3.895 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.354 0.646 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -26.568 2.231 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.289 5.289 14 C -0.039 4.039 15 H 0.080 0.920 16 C -0.161 4.161 17 C -0.030 4.030 18 N -0.339 5.339 19 C 0.309 3.691 20 O -0.392 6.392 21 C 0.053 3.947 22 F -0.162 7.162 23 C -0.210 4.210 24 C -0.030 4.030 25 O -0.276 6.276 26 C -0.042 4.042 27 C -0.018 4.018 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.174 0.826 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.813 -26.513 2.179 26.750 hybrid contribution -0.464 0.891 -0.450 1.101 sum -3.277 -25.621 1.729 25.888 Atomic orbital electron populations 1.69608 1.05940 1.28210 1.50508 1.25271 0.95651 0.99768 0.97267 0.85847 0.79254 0.80743 0.78393 1.20411 1.20910 1.19381 1.19704 0.93389 0.82192 1.47629 0.87886 1.41860 1.09210 1.04603 1.64245 1.19758 0.88379 0.84670 0.84682 1.90534 1.13717 1.87020 1.55430 1.21726 0.94251 0.90772 1.01359 1.60081 1.18479 0.98938 1.51363 1.22677 0.95853 0.89223 0.96112 0.92033 1.22744 1.03949 0.91684 0.97679 1.22353 0.96463 0.97373 0.86819 1.48309 1.53861 1.05872 1.25856 1.19937 0.80797 0.82884 0.85477 1.90735 1.40597 1.84116 1.23714 1.22495 0.98271 0.96410 0.77572 1.92920 1.94424 1.97371 1.31445 1.23569 1.00527 0.93244 1.03647 1.23489 0.86949 0.90135 1.02401 1.89240 1.59611 1.35404 1.43324 1.23972 0.91117 0.97109 0.92051 1.22429 0.98585 0.81842 0.98907 0.91843 0.77449 0.89437 0.93615 0.82558 0.88847 0.89772 0.91359 0.90006 0.86818 0.88184 0.87801 0.91293 0.89287 0.87457 0.90018 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.44 10.07 7.82 -10.98 -0.09 9.98 16 11 O -0.58 -15.50 15.78 5.55 0.09 -15.41 16 12 C 0.05 0.85 6.05 -4.97 -0.03 0.82 16 13 N -0.66 -9.75 6.02 -105.72 -0.64 -10.39 16 14 C 0.07 0.82 3.34 -65.57 -0.22 0.60 16 15 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 16 C -0.12 -1.17 6.65 -24.88 -0.17 -1.33 16 17 C 0.09 0.78 5.88 -3.04 -0.02 0.77 16 18 N -0.61 -6.52 3.33 -170.50 -0.57 -7.09 16 19 C 0.52 6.19 6.82 -10.98 -0.07 6.11 16 20 O -0.52 -7.67 15.59 5.56 0.09 -7.58 16 21 C 0.07 0.67 1.25 -90.21 -0.11 0.56 16 22 F -0.18 -1.63 14.97 2.25 0.03 -1.59 16 23 C -0.17 -1.31 6.51 -25.16 -0.16 -1.47 16 24 C 0.05 0.31 7.63 37.94 0.29 0.60 16 25 O -0.36 -3.34 11.65 -35.23 -0.41 -3.75 16 26 C 0.04 0.27 6.54 37.93 0.25 0.52 16 27 C 0.10 1.20 6.34 -2.53 -0.02 1.18 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.35 5.52 8.18 -39.29 -0.32 5.20 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.45 6.94 -51.93 -0.36 0.09 16 36 H 0.08 0.67 7.05 -51.93 -0.37 0.30 16 37 H 0.11 1.04 6.56 -51.93 -0.34 0.70 16 38 H 0.10 0.59 8.06 -51.93 -0.42 0.17 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.11 0.79 6.96 -51.92 -0.36 0.43 16 43 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -33.20 364.63 -7.06 -40.26 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.21 Total: 11.31 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.59 Total: 10.42 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.54 Total: -54.99 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.24 Total: -26.75 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.20 -7.06 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185136549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.344 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds