Wall clock time and date at job start Tue Mar 31 2020 04:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72524 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.72020 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72280 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99935 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.88375 * 31.11954 * 14 13 12 16 16 C 1.55164 * 111.00241 * 267.19904 * 14 13 12 17 17 C 1.54328 * 102.93753 * 206.42359 * 16 14 13 18 18 N 1.47020 * 107.27396 * 22.19000 * 17 16 14 19 19 C 1.34774 * 125.64781 * 181.01972 * 18 17 16 20 20 O 1.21280 * 119.99945 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99942 * 0.04886 * 19 18 17 22 22 F 1.39903 * 110.45929 * 57.39230 * 21 19 18 23 23 C 1.54511 * 110.50871 * 179.97438 * 21 19 18 24 24 C 1.54479 * 104.06339 * 118.64348 * 23 21 19 25 25 O 1.44427 * 104.80249 * 23.98082 * 24 23 21 26 26 C 1.44429 * 105.27375 * 319.48506 * 25 24 23 27 27 C 1.47422 * 108.70243 * 1.06229 * 18 17 16 28 28 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46547 * 300.00234 * 12 10 9 31 31 H 1.09000 * 109.46974 * 60.00144 * 12 10 9 32 32 H 1.00896 * 111.00516 * 303.95470 * 13 12 10 33 33 H 1.08998 * 110.72153 * 324.78377 * 16 14 13 34 34 H 1.08998 * 110.71629 * 88.05978 * 16 14 13 35 35 H 1.09007 * 109.87836 * 262.77236 * 17 16 14 36 36 H 1.08997 * 110.00743 * 141.68429 * 17 16 14 37 37 H 1.09004 * 110.51186 * 237.28854 * 23 21 19 38 38 H 1.08995 * 110.51496 * 359.85817 * 23 21 19 39 39 H 1.09001 * 110.37301 * 142.80763 * 24 23 21 40 40 H 1.08998 * 110.37328 * 265.03293 * 24 23 21 41 41 H 1.09002 * 110.37272 * 281.68942 * 26 25 24 42 42 H 1.08999 * 110.37498 * 159.34526 * 26 25 24 43 43 H 1.09005 * 110.36750 * 217.03104 * 27 18 17 44 44 H 1.09002 * 110.36740 * 94.70644 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1071 1.6933 -1.2091 5 1 1.2833 2.7464 -0.0068 6 1 3.0970 1.6992 1.2159 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 7 2.1979 -5.9796 0.0174 14 6 1.4975 -7.2709 0.0177 15 1 0.5481 -7.1981 -0.5128 16 6 1.2885 -7.7898 1.4650 17 6 1.2115 -9.3195 1.2758 18 7 1.8798 -9.6365 0.0052 19 6 2.0079 -10.8670 -0.5294 20 8 2.5819 -11.0116 -1.5879 21 6 1.4375 -12.0633 0.1880 22 9 0.0650 -11.8968 0.4017 23 6 1.7072 -13.3554 -0.6151 24 6 2.5738 -14.2130 0.3335 25 8 2.2614 -13.7287 1.6578 26 6 2.1732 -12.2930 1.5269 27 6 2.3875 -8.3854 -0.5869 28 1 -0.4851 -0.8399 -0.0004 29 1 0.3532 -2.3906 0.0015 30 1 0.6131 -4.9188 0.8980 31 1 0.6205 -4.9225 -0.8819 32 1 2.8364 -5.9143 -0.7612 33 1 2.1351 -7.5215 2.0969 34 1 0.3576 -7.4054 1.8817 35 1 0.1692 -9.6360 1.2355 36 1 1.7202 -9.8230 2.0979 37 1 0.7713 -13.8656 -0.8433 38 1 2.2508 -13.1287 -1.5322 39 1 2.3080 -15.2662 0.2422 40 1 3.6319 -14.0692 0.1148 41 1 3.1699 -11.8532 1.4924 42 1 1.5997 -11.8712 2.3522 43 1 2.2817 -8.4087 -1.6715 44 1 3.4302 -8.2304 -0.3097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185136550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:07 Heat of formation + Delta-G solvation = -146.357753 kcal Electronic energy + Delta-G solvation = -28157.703972 eV Core-core repulsion = 23831.901995 eV Total energy + Delta-G solvation = -4325.801977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.45538 -40.74399 -39.37707 -38.55407 -37.85427 -35.07914 -34.15783 -32.38331 -31.29859 -30.96180 -30.03194 -28.87322 -26.19258 -24.77206 -23.84492 -23.50375 -22.31775 -20.86887 -20.00339 -19.67638 -18.34564 -17.96025 -17.41046 -17.02035 -16.57605 -16.46111 -16.13099 -15.89354 -15.30941 -15.17631 -14.84282 -14.60883 -14.46594 -14.16728 -13.87084 -13.82662 -13.59784 -13.34273 -13.22141 -12.87993 -12.66551 -12.63435 -12.36819 -11.95391 -11.89172 -11.72993 -11.56067 -11.41346 -11.24620 -11.04120 -10.94496 -10.45329 -10.27799 -10.22790 -9.90410 -9.58856 -9.14913 -8.62192 -8.30311 -8.07865 -6.79154 -3.92689 1.85577 2.22516 3.18758 3.28351 3.33011 3.36726 3.53207 3.71120 3.78567 3.86070 3.92462 4.04935 4.24707 4.30318 4.37120 4.48138 4.52855 4.75781 4.85159 4.90686 4.93025 5.01129 5.10081 5.12958 5.20461 5.22284 5.28933 5.37466 5.43455 5.49634 5.61278 5.66424 5.72964 5.77125 5.89378 6.00648 6.03092 6.88193 6.97300 7.39252 7.44569 7.76145 8.03970 8.55237 8.74942 9.42824 9.82069 10.64132 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.040645 B = 0.001913 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.721181 B =14634.632999 C =14769.269293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.009 4.009 3 Si 1.092 2.908 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.383 4.383 8 H 0.099 0.901 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.051 3.949 13 N -0.654 5.654 14 C 0.072 3.928 15 H 0.064 0.936 16 C -0.121 4.121 17 C 0.090 3.910 18 N -0.603 5.603 19 C 0.522 3.478 20 O -0.518 6.518 21 C 0.076 3.924 22 F -0.180 7.180 23 C -0.172 4.172 24 C 0.045 3.955 25 O -0.361 6.361 26 C 0.033 3.967 27 C 0.103 3.897 28 H 0.261 0.739 29 H 0.376 0.624 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.354 0.646 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -26.228 2.032 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.081 4.081 13 N -0.288 5.288 14 C -0.039 4.039 15 H 0.082 0.918 16 C -0.160 4.160 17 C -0.033 4.033 18 N -0.337 5.337 19 C 0.307 3.693 20 O -0.394 6.394 21 C 0.054 3.946 22 F -0.160 7.160 23 C -0.210 4.210 24 C -0.032 4.032 25 O -0.279 6.279 26 C -0.044 4.044 27 C -0.019 4.019 28 H 0.072 0.928 29 H 0.209 0.791 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.175 0.825 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.100 0.900 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.253 -24.794 2.308 24.903 hybrid contribution -1.002 -1.564 -1.027 2.122 sum -0.748 -26.358 1.281 26.400 Atomic orbital electron populations 1.70903 1.06520 1.29393 1.47065 1.26533 0.96544 1.02685 0.95424 0.83128 0.74439 0.73591 0.77102 1.21003 1.20400 1.20954 1.20536 0.94688 0.83822 1.52156 0.88283 1.41931 1.08204 1.05560 1.65520 1.19674 0.88407 0.84410 0.84757 1.90537 1.13624 1.86870 1.54973 1.21734 0.94300 0.90820 1.01286 1.60080 1.18220 0.98939 1.51536 1.22694 0.96098 0.89113 0.95970 0.91847 1.22730 1.04169 0.91512 0.97559 1.22388 0.98099 0.97667 0.85122 1.48318 1.55901 1.06050 1.23420 1.20011 0.80823 0.83037 0.85449 1.90737 1.42886 1.84300 1.21440 1.22453 0.78345 0.95608 0.98167 1.92941 1.30754 1.96497 1.95800 1.23583 1.03663 0.92758 1.00985 1.23519 0.98957 0.99539 0.81169 1.89215 1.91756 1.18257 1.28683 1.24045 1.00840 0.84032 0.95514 1.22467 0.98935 0.81680 0.98830 0.92766 0.79131 0.89457 0.93665 0.82514 0.88838 0.89721 0.90312 0.90852 0.88310 0.86562 0.87789 0.91137 0.89860 0.86658 0.89996 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.68 55.50 0.76 -24.12 16 2 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 3 Si 1.09 23.98 29.92 -169.99 -5.09 18.89 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.38 -10.61 9.68 -14.93 -0.14 -10.75 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.57 -14.10 5.28 -10.96 -0.06 -14.16 16 10 C 0.44 10.06 7.82 -10.98 -0.09 9.98 16 11 O -0.58 -15.33 15.78 5.55 0.09 -15.24 16 12 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 13 N -0.65 -9.49 6.04 -105.72 -0.64 -10.13 16 14 C 0.07 0.79 3.38 -65.56 -0.22 0.57 16 15 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 16 C -0.12 -1.10 6.65 -24.89 -0.17 -1.27 16 17 C 0.09 0.72 5.90 -3.06 -0.02 0.70 16 18 N -0.60 -6.09 3.33 -170.52 -0.57 -6.66 16 19 C 0.52 5.77 6.84 -10.99 -0.08 5.69 16 20 O -0.52 -7.16 15.54 5.56 0.09 -7.08 16 21 C 0.08 0.69 1.23 -90.20 -0.11 0.57 16 22 F -0.18 -1.77 15.66 2.25 0.04 -1.73 16 23 C -0.17 -1.32 6.52 -25.16 -0.16 -1.48 16 24 C 0.04 0.29 7.63 37.93 0.29 0.58 16 25 O -0.36 -3.17 11.65 -35.23 -0.41 -3.58 16 26 C 0.03 0.25 5.78 37.93 0.22 0.47 16 27 C 0.10 1.11 6.31 -2.53 -0.02 1.10 16 28 H 0.26 6.91 6.77 -40.82 -0.28 6.63 16 29 H 0.38 8.48 6.73 -40.82 -0.27 8.20 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.35 5.38 8.14 -39.29 -0.32 5.06 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.59 7.30 -51.92 -0.38 0.21 16 36 H 0.07 0.46 6.50 -51.93 -0.34 0.12 16 37 H 0.10 0.67 8.06 -51.93 -0.42 0.25 16 38 H 0.12 0.98 6.50 -51.93 -0.34 0.64 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.58 7.86 -51.93 -0.41 0.18 16 42 H 0.12 0.71 7.24 -51.93 -0.38 0.33 16 43 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -34.16 362.55 -7.03 -41.19 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.08 Total: 10.54 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.62 Total: 6.62 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.50 Total: -55.07 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.24 Total: -25.89 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.09 Total: 18.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.16 -7.03 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185136550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.173 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds