Wall clock time and date at job start Tue Mar 31 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 H 1.09002 * 109.47307 * 304.99559 * 3 2 1 5 5 C 1.50703 * 109.46956 * 185.00154 * 3 2 1 6 6 N 1.34776 * 120.00180 * 78.93423 * 5 3 2 7 7 O 1.21286 * 120.00036 * 258.93337 * 5 3 2 8 8 N 1.46897 * 109.47471 * 64.99996 * 3 2 1 9 9 C 1.46905 * 111.00057 * 54.33195 * 8 3 2 10 10 C 1.46905 * 111.00290 * 178.28922 * 8 3 2 11 11 H 1.09001 * 110.88028 * 297.57333 * 10 8 3 12 12 C 1.55547 * 110.99858 * 173.66630 * 10 8 3 13 13 C 1.54330 * 102.75728 * 206.38658 * 12 10 8 14 14 N 1.47019 * 107.40079 * 22.23635 * 13 12 10 15 15 C 1.34776 * 125.64361 * 180.94479 * 14 13 12 16 16 O 1.21286 * 119.99763 * 180.02562 * 15 14 13 17 17 C 1.50692 * 120.00349 * 0.02910 * 15 14 13 18 18 S 1.81004 * 109.47371 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00287 * 180.02562 * 18 17 15 20 20 H 1.08010 * 119.99886 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00319 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00212 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47595 * 89.99730 * 23 21 19 25 25 H 1.48508 * 109.47239 * 209.99956 * 23 21 19 26 26 H 1.48503 * 109.47257 * 329.99767 * 23 21 19 27 27 C 1.47420 * 108.70449 * 0.98389 * 14 13 12 28 28 H 1.09002 * 109.47051 * 300.00076 * 1 2 3 29 29 H 1.08998 * 109.47422 * 60.00209 * 1 2 3 30 30 H 1.08997 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47132 * 239.99380 * 2 1 3 32 32 H 1.09008 * 109.46959 * 119.99544 * 2 1 3 33 33 H 0.96998 * 119.99980 * 0.02562 * 6 5 3 34 34 H 0.97000 * 119.99630 * 180.02562 * 6 5 3 35 35 H 1.08994 * 109.47272 * 190.19598 * 9 8 3 36 36 H 1.08999 * 109.47261 * 310.20731 * 9 8 3 37 37 H 1.09007 * 109.46730 * 70.20258 * 9 8 3 38 38 H 1.09003 * 110.83202 * 88.07633 * 12 10 8 39 39 H 1.08996 * 110.78340 * 324.67362 * 12 10 8 40 40 H 1.09005 * 109.87975 * 262.74926 * 13 12 10 41 41 H 1.08995 * 109.88128 * 141.73972 * 13 12 10 42 42 H 1.09005 * 109.47403 * 299.99760 * 17 15 14 43 43 H 1.09001 * 109.47338 * 59.99863 * 17 15 14 44 44 H 0.97002 * 120.00254 * 180.02562 * 22 21 19 45 45 H 1.09005 * 110.36346 * 94.70947 * 27 14 13 46 46 H 1.09004 * 110.36698 * 217.02880 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 7 4.1191 1.2544 -1.3269 7 8 4.2312 1.6166 0.8590 8 7 1.6513 2.0993 1.2552 9 6 2.1066 1.3248 2.4175 10 6 2.1599 3.4765 1.3082 11 1 3.2496 3.4893 1.2867 12 6 1.6174 4.2232 2.5602 13 6 1.6508 5.7010 2.1166 14 7 1.6364 5.7193 0.6466 15 6 1.6749 6.8232 -0.1256 16 8 1.6576 6.7191 -1.3338 17 6 1.7396 8.1870 0.5122 18 16 1.7788 9.4555 -0.7784 19 6 1.8520 10.9056 0.2198 20 1 1.8603 10.8202 1.2965 21 6 1.8990 12.1576 -0.3774 22 7 1.8894 12.2617 -1.6896 23 14 1.9758 13.6949 0.6809 24 1 3.3949 14.0428 0.9465 25 1 1.3154 14.8190 -0.0303 26 1 1.2781 13.4454 1.9679 27 6 1.5718 4.3302 0.1572 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5678 1.1170 -2.1131 34 1 5.0858 1.2552 -1.4065 35 1 1.6556 1.7300 3.3233 36 1 1.8100 0.2827 2.2986 37 1 3.1923 1.3873 2.4930 38 1 2.2690 4.0637 3.4193 39 1 0.5975 3.9111 2.7849 40 1 2.5593 6.1780 2.4843 41 1 0.7756 6.2237 2.5025 42 1 0.8618 8.3361 1.1410 43 1 2.6401 8.2607 1.1220 44 1 1.9226 13.1367 -2.1070 45 1 0.5381 4.0442 -0.0374 46 1 2.1737 4.2174 -0.7446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188974574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:23 Heat of formation + Delta-G solvation = -60.062446 kcal Electronic energy + Delta-G solvation = -26564.530370 eV Core-core repulsion = 22808.683614 eV Total energy + Delta-G solvation = -3755.846756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97331 -39.50923 -37.65284 -36.20141 -34.33489 -33.03343 -32.41446 -30.74129 -29.83191 -28.28336 -27.78430 -25.49694 -24.77504 -23.18791 -22.37264 -21.02808 -20.02891 -19.24033 -17.78684 -17.68086 -17.45823 -16.67999 -16.52246 -15.76031 -15.34658 -15.15915 -14.79197 -14.76376 -14.57072 -14.06514 -13.89682 -13.73794 -13.55924 -13.30070 -12.78401 -12.64804 -12.54096 -12.47287 -12.12176 -11.98115 -11.88614 -11.72348 -11.39266 -11.11914 -11.04681 -11.03839 -10.99399 -10.90414 -10.74510 -10.62162 -10.00641 -9.80132 -9.39442 -9.05147 -8.51261 -8.44212 -8.21852 -6.48601 -6.20219 -3.90659 2.21243 2.87070 3.08609 3.15352 3.23548 3.25827 3.31054 3.48897 3.72342 4.19773 4.23298 4.36565 4.47229 4.56239 4.62170 4.88521 4.96436 5.05774 5.13808 5.14958 5.17786 5.22758 5.25030 5.32020 5.52394 5.56491 5.60853 5.64398 5.68347 5.69919 5.77862 5.78877 5.88386 5.93626 6.00158 6.03558 6.17130 6.39091 6.43377 6.58797 6.72408 6.94983 7.61075 7.70352 7.87690 8.36852 8.57780 9.25057 10.87278 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002428 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.220334 B =11530.842321 C =11827.343411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.060 3.940 4 H 0.109 0.891 5 C 0.491 3.509 6 N -0.853 5.853 7 O -0.541 6.541 8 N -0.497 5.497 9 C 0.000 4.000 10 C 0.056 3.944 11 H 0.077 0.923 12 C -0.118 4.118 13 C 0.103 3.897 14 N -0.624 5.624 15 C 0.549 3.451 16 O -0.518 6.518 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.117 3.883 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.075 0.925 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -27.482 6.367 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.053 4.053 4 H 0.127 0.873 5 C 0.274 3.726 6 N -0.416 5.416 7 O -0.418 6.418 8 N -0.220 5.220 9 C -0.148 4.148 10 C -0.053 4.053 11 H 0.094 0.906 12 C -0.156 4.156 13 C -0.021 4.021 14 N -0.362 5.362 15 C 0.338 3.662 16 O -0.392 6.392 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.007 4.007 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.916 -27.273 5.132 27.766 hybrid contribution 1.189 1.052 1.562 2.227 sum 0.272 -26.221 6.695 27.063 Atomic orbital electron populations 1.21677 0.93806 1.01458 1.03254 1.21623 0.97937 0.92824 1.02822 1.22074 0.89153 0.98132 0.95892 0.87301 1.22120 0.92404 0.74901 0.83144 1.44081 1.11640 1.75530 1.10355 1.90680 1.65458 1.48994 1.36650 1.62434 1.57100 1.01296 1.01169 1.22767 1.01632 0.97910 0.92440 1.23109 0.98794 0.87433 0.95940 0.90558 1.22710 1.02715 0.93149 0.97013 1.21993 1.02249 0.97127 0.80704 1.48387 1.75533 1.05424 1.06815 1.20023 0.75109 0.84488 0.86581 1.90697 1.48472 1.86224 1.13795 1.23501 1.04827 0.95771 1.05568 1.85373 1.96526 0.94990 1.06582 1.22860 1.58725 0.91976 0.94653 0.90928 1.24992 0.94568 0.98727 0.95321 1.70021 1.46904 1.24809 1.08606 0.86164 0.78378 0.81106 0.79822 1.20281 1.20749 1.19679 1.22079 1.01260 0.81027 0.96293 0.91102 0.92495 0.92869 0.91244 0.90724 0.76929 0.76974 0.91420 0.91217 0.91641 0.90135 0.89497 0.91317 0.90982 0.89222 0.89308 0.92202 0.90698 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.80 37.16 0.36 -0.44 16 2 C -0.11 -0.65 5.05 -26.73 -0.13 -0.78 16 3 C 0.06 0.46 1.99 -68.87 -0.14 0.32 16 4 H 0.11 0.79 7.21 -51.93 -0.37 0.42 16 5 C 0.49 4.52 6.51 -10.98 -0.07 4.45 16 6 N -0.85 -5.29 8.87 31.22 0.28 -5.02 16 7 O -0.54 -6.90 12.92 5.55 0.07 -6.83 16 8 N -0.50 -4.38 4.15 -225.47 -0.94 -5.32 16 9 C 0.00 0.00 8.56 60.07 0.51 0.51 16 10 C 0.06 0.61 2.21 -65.35 -0.14 0.46 16 11 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 12 C -0.12 -1.12 5.52 -24.68 -0.14 -1.26 16 13 C 0.10 1.22 6.47 -3.06 -0.02 1.20 16 14 N -0.62 -9.63 3.33 -170.53 -0.57 -10.19 16 15 C 0.55 11.05 7.87 -10.99 -0.09 10.97 16 16 O -0.52 -12.29 16.12 5.55 0.09 -12.20 16 17 C -0.15 -3.10 5.35 36.00 0.19 -2.91 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.12 1.52 5.34 -2.54 -0.01 1.51 16 28 H 0.07 0.47 7.75 -51.93 -0.40 0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.46 5.83 -51.92 -0.30 0.16 16 33 H 0.40 1.42 8.83 -40.82 -0.36 1.06 16 34 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 35 H 0.07 0.51 7.47 -51.93 -0.39 0.12 16 36 H 0.07 0.50 5.55 -51.93 -0.29 0.21 16 37 H 0.07 0.70 5.58 -51.92 -0.29 0.41 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 43 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -36.63 378.46 -8.61 -45.24 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.27 Total: 0.69 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.52 Total: 0.93 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.49 Total: -46.20 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.16 Total: -19.03 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.63 -8.61 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.821 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds