Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46870 * 2 1 4 4 H 1.09003 * 109.47063 * 55.79895 * 3 2 1 5 5 C 1.50707 * 109.47001 * 175.79775 * 3 2 1 6 6 N 1.34777 * 119.99958 * 279.29897 * 5 3 2 7 7 O 1.21282 * 119.99527 * 99.29619 * 5 3 2 8 8 N 1.46892 * 109.47221 * 295.79709 * 3 2 1 9 9 C 1.46900 * 111.00184 * 307.37981 * 8 3 2 10 10 C 1.46899 * 111.00410 * 183.42284 * 8 3 2 11 11 H 1.08993 * 110.88652 * 66.16300 * 10 8 3 12 12 C 1.55549 * 110.99757 * 302.25520 * 10 8 3 13 13 C 1.54315 * 102.76274 * 206.38413 * 12 10 8 14 14 N 1.47026 * 107.40330 * 22.24238 * 13 12 10 15 15 C 1.34774 * 125.65102 * 180.94696 * 14 13 12 16 16 O 1.21278 * 119.99699 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99854 * 0.02562 * 15 14 13 18 18 S 1.81005 * 109.47023 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99859 * 180.02562 * 18 17 15 20 20 H 1.07992 * 120.00255 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99634 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47238 * 59.99962 * 23 21 19 25 25 H 1.48497 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47076 * 300.00052 * 23 21 19 27 27 C 1.47429 * 108.69868 * 0.97963 * 14 13 12 28 28 H 1.08997 * 109.47557 * 305.18349 * 1 2 3 29 29 H 1.08996 * 109.47270 * 65.18704 * 1 2 3 30 30 H 1.09005 * 109.46955 * 185.17933 * 1 2 3 31 31 H 1.08995 * 109.47462 * 239.99602 * 2 1 3 32 32 H 1.09001 * 109.47084 * 119.99695 * 2 1 3 33 33 H 0.96992 * 120.00233 * 359.97438 * 6 5 3 34 34 H 0.97004 * 119.99738 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46690 * 298.14625 * 9 8 3 36 36 H 1.08994 * 109.47777 * 58.14393 * 9 8 3 37 37 H 1.09002 * 109.47473 * 178.15013 * 9 8 3 38 38 H 1.09004 * 110.82879 * 88.06840 * 12 10 8 39 39 H 1.09001 * 110.78208 * 324.68118 * 12 10 8 40 40 H 1.09000 * 109.88733 * 262.74775 * 13 12 10 41 41 H 1.09007 * 109.88394 * 141.73713 * 13 12 10 42 42 H 1.09002 * 109.47569 * 300.00137 * 17 15 14 43 43 H 1.08998 * 109.46695 * 60.00529 * 17 15 14 44 44 H 0.97002 * 120.00078 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.36616 * 94.71389 * 27 14 13 46 46 H 1.09002 * 110.36249 * 217.03081 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6164 1.9776 0.8500 5 6 3.5434 1.4438 0.1041 6 7 4.1359 1.2840 1.3041 7 8 4.2200 1.5886 -0.8919 8 7 1.6349 2.1050 -1.2469 9 6 2.0393 1.3157 -2.4179 10 6 2.1766 3.4686 -1.3186 11 1 3.2639 3.4514 -1.3924 12 6 1.7132 4.3173 -0.1001 13 6 1.7584 5.7580 -0.6512 14 7 1.6722 5.6713 -2.1164 15 6 1.6980 6.7156 -2.9679 16 8 1.6189 6.5255 -4.1631 17 6 1.8249 8.1195 -2.4349 18 16 1.8296 9.2906 -3.8150 19 6 1.9846 10.8061 -2.9296 20 1 2.0438 10.7980 -1.8513 21 6 2.0297 12.0105 -3.6180 22 7 1.9560 12.0206 -4.9322 23 14 2.1947 13.6172 -2.6795 24 1 3.4556 13.6050 -1.8952 25 1 2.2189 14.7505 -3.6388 26 1 1.0403 13.7733 -1.7585 27 6 1.5522 4.2527 -2.4997 28 1 -0.3634 0.5921 0.8399 29 1 -0.3633 0.4312 -0.9328 30 1 -0.3633 -1.0235 0.0928 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5948 1.1685 2.1006 34 1 5.1036 1.2852 1.3711 35 1 3.1255 1.2264 -2.4384 36 1 1.5943 0.3225 -2.3580 37 1 1.6984 1.8124 -3.3263 38 1 2.4024 4.2026 0.7366 39 1 0.6988 4.0487 0.1948 40 1 2.6945 6.2361 -0.3626 41 1 0.9153 6.3298 -0.2635 42 1 0.9827 8.3363 -1.7778 43 1 2.7557 8.2129 -1.8756 44 1 1.9871 12.8623 -5.4133 45 1 0.5040 3.9807 -2.6238 46 1 2.1064 4.0599 -3.4183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188974575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -60.013021 kcal Electronic energy + Delta-G solvation = -26454.413816 eV Core-core repulsion = 22698.569204 eV Total energy + Delta-G solvation = -3755.844613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02498 -39.51091 -37.65342 -36.21588 -34.39649 -33.05537 -32.40216 -30.91346 -29.73510 -28.19320 -27.72770 -25.51692 -25.06031 -22.83412 -22.43496 -21.27680 -20.01062 -19.25024 -17.85558 -17.64388 -17.47386 -16.69390 -16.52481 -15.60108 -15.53220 -15.14499 -14.80522 -14.78291 -14.64073 -14.15657 -13.88759 -13.77561 -13.45238 -13.25698 -12.83523 -12.61892 -12.53831 -12.45012 -12.22865 -12.10362 -11.75343 -11.67153 -11.47135 -11.16868 -11.04502 -11.02304 -11.01439 -10.92577 -10.74897 -10.68674 -10.09381 -9.79684 -9.35644 -9.03258 -8.51397 -8.40987 -8.20008 -6.46825 -6.18539 -3.89053 2.13869 2.88753 3.06343 3.12408 3.25252 3.26078 3.30548 3.49531 3.72995 4.18840 4.23613 4.33292 4.41583 4.49541 4.56806 4.80720 4.92269 5.04885 5.08941 5.16252 5.20344 5.25544 5.26807 5.27671 5.49823 5.53071 5.55729 5.63536 5.66863 5.67322 5.79538 5.84398 5.90203 5.94902 5.99246 6.00630 6.17947 6.33774 6.44619 6.56073 6.72876 6.86733 7.61844 7.73604 7.80451 8.37863 8.61907 9.26290 10.88871 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002324 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.278448 B =12043.251098 C =12388.887107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.065 3.935 4 H 0.108 0.892 5 C 0.488 3.512 6 N -0.855 5.855 7 O -0.535 6.535 8 N -0.497 5.497 9 C -0.005 4.005 10 C 0.056 3.944 11 H 0.077 0.923 12 C -0.126 4.126 13 C 0.105 3.895 14 N -0.625 5.625 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.123 3.877 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -26.508 17.883 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.047 4.047 4 H 0.125 0.875 5 C 0.272 3.728 6 N -0.419 5.419 7 O -0.412 6.412 8 N -0.220 5.220 9 C -0.153 4.153 10 C -0.053 4.053 11 H 0.095 0.905 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.363 5.363 15 C 0.337 3.663 16 O -0.389 6.389 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.979 -26.448 15.091 30.466 hybrid contribution 1.321 1.176 2.633 3.172 sum 0.342 -25.272 17.723 30.869 Atomic orbital electron populations 1.21664 0.93777 1.01325 1.03276 1.21612 0.97924 0.92908 1.02882 1.22029 0.88807 0.97884 0.96008 0.87464 1.22202 0.92429 0.74929 0.83244 1.44108 1.11511 1.76430 1.09846 1.90707 1.66255 1.48673 1.35562 1.62426 1.56874 1.01463 1.01266 1.22829 1.02132 0.97911 0.92393 1.23100 0.98745 0.87587 0.95825 0.90472 1.22802 1.02726 0.93816 0.97036 1.21928 1.02100 0.97021 0.80817 1.48403 1.75238 1.05990 1.06650 1.20009 0.75308 0.85277 0.85675 1.90708 1.48205 1.85062 1.14939 1.23499 1.04669 0.95091 1.06367 1.85408 1.96014 0.96607 1.05356 1.22817 1.58478 0.91989 0.95036 0.91007 1.24991 0.94612 0.98952 0.95041 1.70010 1.46697 1.27381 1.06197 0.86224 0.78805 0.81208 0.79249 1.19962 1.20816 1.19946 1.22006 1.01132 0.80052 0.96897 0.92553 0.91187 0.92880 0.90714 0.91311 0.77094 0.77042 0.91456 0.91192 0.91126 0.90782 0.89378 0.91430 0.91007 0.89289 0.89370 0.92139 0.90737 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.73 37.16 0.36 -0.33 16 2 C -0.12 -0.57 4.94 -26.73 -0.13 -0.70 16 3 C 0.07 0.42 1.95 -68.87 -0.13 0.28 16 4 H 0.11 0.50 7.23 -51.93 -0.38 0.13 16 5 C 0.49 3.85 6.51 -10.98 -0.07 3.78 16 6 N -0.86 -3.62 8.87 31.22 0.28 -3.34 16 7 O -0.54 -6.60 12.91 5.56 0.07 -6.53 16 8 N -0.50 -4.35 4.23 -225.48 -0.95 -5.30 16 9 C -0.01 -0.05 8.61 60.06 0.52 0.47 16 10 C 0.06 0.61 2.13 -65.35 -0.14 0.47 16 11 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 12 C -0.13 -1.09 5.23 -24.69 -0.13 -1.22 16 13 C 0.11 1.21 6.47 -3.07 -0.02 1.19 16 14 N -0.62 -9.81 3.33 -170.52 -0.57 -10.37 16 15 C 0.55 11.26 7.87 -10.99 -0.09 11.17 16 16 O -0.52 -12.59 16.12 5.56 0.09 -12.50 16 17 C -0.15 -3.12 5.35 36.01 0.19 -2.92 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.12 1.68 5.55 -2.53 -0.01 1.67 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.45 6.03 -51.93 -0.31 0.14 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.40 0.46 8.83 -40.82 -0.36 0.10 16 34 H 0.40 1.60 8.93 -40.82 -0.36 1.24 16 35 H 0.07 0.78 5.40 -51.93 -0.28 0.50 16 36 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 37 H 0.07 0.71 7.19 -51.93 -0.37 0.34 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -37.35 378.48 -8.62 -45.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.29 Total: -1.18 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.54 Total: 0.65 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.51 Total: -44.85 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.16 Total: -19.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.35 -8.62 -45.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.042 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds