Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46919 * 2 1 4 4 H 1.08994 * 109.46905 * 57.29080 * 3 2 1 5 5 C 1.50699 * 109.46824 * 177.29017 * 3 2 1 6 6 N 1.34771 * 119.99997 * 286.70808 * 5 3 2 7 7 O 1.21285 * 119.99869 * 106.71342 * 5 3 2 8 8 N 1.46898 * 109.47004 * 297.28847 * 3 2 1 9 9 C 1.46904 * 111.00180 * 307.82206 * 8 3 2 10 10 C 1.46894 * 110.99876 * 183.86706 * 8 3 2 11 11 H 1.09005 * 110.88919 * 68.88722 * 10 8 3 12 12 C 1.55162 * 111.00317 * 192.80806 * 10 8 3 13 13 C 1.54323 * 102.94458 * 153.57678 * 12 10 8 14 14 N 1.47026 * 107.26833 * 337.80707 * 13 12 10 15 15 C 1.34775 * 125.64688 * 178.97520 * 14 13 12 16 16 O 1.21287 * 119.99830 * 179.97438 * 15 14 13 17 17 C 1.50702 * 120.00077 * 359.96044 * 15 14 13 18 18 S 1.81005 * 109.47139 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99815 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99648 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00413 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46937 * 89.99478 * 23 21 19 25 25 H 1.48501 * 109.47113 * 209.99583 * 23 21 19 26 26 H 1.48499 * 109.46861 * 329.99337 * 23 21 19 27 27 C 1.47422 * 108.70405 * 358.93989 * 14 13 12 28 28 H 1.09001 * 109.47030 * 175.77394 * 1 2 3 29 29 H 1.08996 * 109.47065 * 295.77745 * 1 2 3 30 30 H 1.08998 * 109.46923 * 55.77836 * 1 2 3 31 31 H 1.08999 * 109.47046 * 119.99570 * 2 1 3 32 32 H 1.08995 * 109.47372 * 239.99721 * 2 1 3 33 33 H 0.96996 * 120.00452 * 0.02562 * 6 5 3 34 34 H 0.97010 * 120.00157 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.47378 * 66.29455 * 9 8 3 36 36 H 1.08994 * 109.47302 * 186.30211 * 9 8 3 37 37 H 1.09004 * 109.46975 * 306.29856 * 9 8 3 38 38 H 1.09007 * 110.72029 * 271.93627 * 12 10 8 39 39 H 1.08997 * 110.72362 * 35.21174 * 12 10 8 40 40 H 1.08999 * 109.88633 * 218.39064 * 13 12 10 41 41 H 1.09002 * 110.01142 * 97.29432 * 13 12 10 42 42 H 1.08998 * 109.46936 * 299.99696 * 17 15 14 43 43 H 1.09002 * 109.47420 * 59.99743 * 17 15 14 44 44 H 0.96994 * 120.00151 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.36888 * 265.29008 * 27 14 13 46 46 H 1.09007 * 110.36613 * 142.96734 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6375 1.9702 0.8647 5 6 3.5455 1.4431 0.0672 6 7 4.1687 1.1254 1.2191 7 8 4.1962 1.7295 -0.9154 8 7 1.6045 2.1159 -1.2308 9 6 1.9707 1.3315 -2.4178 10 6 2.1530 3.4763 -1.3090 11 1 3.2321 3.4521 -1.4615 12 6 1.4512 4.2957 -2.4241 13 6 1.6105 5.7510 -1.9360 14 7 1.8300 5.7024 -0.4830 15 6 2.0341 6.7680 0.3165 16 8 2.2044 6.6092 1.5068 17 6 2.0511 8.1568 -0.2684 18 16 2.3445 9.3628 1.0490 19 6 2.3146 10.8540 0.1108 20 1 2.1491 10.8177 -0.9557 21 6 2.5048 12.0752 0.7425 22 7 2.7070 12.1194 2.0425 23 14 2.4724 13.6562 -0.2519 24 1 1.0840 14.1802 -0.3034 25 1 3.3577 14.6620 0.3884 26 1 2.9500 13.3832 -1.6313 27 6 1.7890 4.2952 -0.0455 28 1 -0.3633 -1.0249 -0.0757 29 1 -0.3633 0.4469 0.9254 30 1 -0.3633 0.5780 -0.8497 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.6483 0.8961 2.0049 34 1 5.1378 1.1261 1.2625 35 1 1.4079 0.3981 -2.4244 36 1 1.7380 1.9025 -3.3166 37 1 3.0381 1.1120 -2.3931 38 1 1.9529 4.1530 -3.3813 39 1 0.3976 4.0261 -2.4958 40 1 0.7051 6.3168 -2.1554 41 1 2.4662 6.2169 -2.4248 42 1 2.8459 8.2286 -1.0108 43 1 1.0915 8.3632 -0.7424 44 1 2.8396 12.9728 2.4839 45 1 0.7888 4.0345 0.3004 46 1 2.5213 4.1217 0.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188974576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = -61.082432 kcal Electronic energy + Delta-G solvation = -26622.673122 eV Core-core repulsion = 22866.782136 eV Total energy + Delta-G solvation = -3755.890986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.00898 -39.48813 -37.63647 -36.20930 -34.35717 -32.97236 -32.41089 -30.74216 -29.83744 -28.31897 -27.75827 -25.49216 -24.72927 -23.20681 -22.37797 -21.02926 -20.00467 -19.22465 -17.77754 -17.64425 -17.45807 -16.70072 -16.52238 -15.72058 -15.25804 -15.19340 -14.79128 -14.77284 -14.57868 -14.11614 -13.91833 -13.75612 -13.53541 -13.21494 -12.74083 -12.63528 -12.51702 -12.46559 -12.15101 -12.01184 -11.87896 -11.73231 -11.41395 -11.12784 -11.05000 -11.00380 -10.98553 -10.94548 -10.74367 -10.63892 -9.96016 -9.79764 -9.38690 -9.04811 -8.50938 -8.42924 -8.21399 -6.48178 -6.19850 -3.90266 2.21948 2.87997 3.09371 3.16578 3.23779 3.26182 3.31361 3.49461 3.72980 4.20918 4.24426 4.37492 4.47326 4.57482 4.63631 4.89150 4.98735 5.06167 5.13048 5.15311 5.17139 5.25629 5.28872 5.32402 5.52568 5.55262 5.59535 5.63158 5.69516 5.70904 5.77578 5.80137 5.83268 5.95906 6.01172 6.04472 6.17706 6.40230 6.43105 6.58759 6.73658 6.96091 7.61486 7.71269 7.88249 8.37261 8.58521 9.25407 10.87650 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.002457 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.807998 B =11394.213952 C =11760.415990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.059 3.941 4 H 0.111 0.889 5 C 0.490 3.510 6 N -0.852 5.852 7 O -0.539 6.539 8 N -0.497 5.497 9 C 0.004 3.996 10 C 0.053 3.947 11 H 0.085 0.915 12 C -0.118 4.118 13 C 0.103 3.897 14 N -0.623 5.623 15 C 0.549 3.451 16 O -0.518 6.518 17 C -0.146 4.146 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.116 3.884 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -27.358 -7.274 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.053 4.053 4 H 0.129 0.871 5 C 0.274 3.726 6 N -0.416 5.416 7 O -0.417 6.417 8 N -0.220 5.220 9 C -0.144 4.144 10 C -0.056 4.056 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.020 4.020 14 N -0.361 5.361 15 C 0.338 3.662 16 O -0.392 6.392 17 C -0.296 4.296 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.007 4.007 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.172 -27.140 -6.024 27.981 hybrid contribution 0.892 1.066 -1.569 2.096 sum -2.280 -26.075 -7.593 27.253 Atomic orbital electron populations 1.21693 0.93833 1.01571 1.03220 1.21584 0.97946 0.92823 1.02760 1.22072 0.88881 0.97944 0.96440 0.87129 1.22082 0.92160 0.75395 0.82954 1.44061 1.11486 1.72273 1.13754 1.90680 1.67961 1.47923 1.35114 1.62457 1.56623 1.01525 1.01378 1.22675 1.01541 0.98008 0.92146 1.23110 0.99335 0.87432 0.95678 0.89685 1.22646 1.02130 0.92943 0.97891 1.22000 1.01693 0.97346 0.80991 1.48385 1.73619 1.05744 1.08368 1.20030 0.75231 0.85008 0.85950 1.90696 1.48033 1.85534 1.14962 1.23501 1.04950 0.95286 1.05909 1.85375 1.93874 0.96242 1.07992 1.22859 1.57047 0.92080 0.96222 0.90923 1.24994 0.94549 0.98878 0.95181 1.70019 1.45550 1.26427 1.08351 0.86163 0.78186 0.81425 0.79704 1.20256 1.20762 1.19690 1.22097 1.01637 0.80951 0.96044 0.92883 0.92525 0.90940 0.91224 0.91013 0.76956 0.76941 0.91362 0.91334 0.92174 0.90233 0.89526 0.91007 0.91294 0.89298 0.89224 0.92203 0.90863 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.74 37.16 0.36 -0.43 16 2 C -0.11 -0.63 4.91 -26.73 -0.13 -0.76 16 3 C 0.06 0.46 1.91 -68.86 -0.13 0.33 16 4 H 0.11 0.82 7.12 -51.93 -0.37 0.45 16 5 C 0.49 4.60 6.64 -10.99 -0.07 4.53 16 6 N -0.85 -5.40 8.87 31.22 0.28 -5.12 16 7 O -0.54 -7.04 12.65 5.55 0.07 -6.97 16 8 N -0.50 -4.39 4.00 -225.73 -0.90 -5.29 16 9 C 0.00 0.03 8.48 60.07 0.51 0.54 16 10 C 0.05 0.58 2.06 -65.57 -0.13 0.45 16 11 H 0.09 1.15 5.93 -51.93 -0.31 0.84 16 12 C -0.12 -1.13 5.66 -24.89 -0.14 -1.27 16 13 C 0.10 1.23 6.49 -3.06 -0.02 1.21 16 14 N -0.62 -9.74 3.33 -170.52 -0.57 -10.31 16 15 C 0.55 11.15 7.87 -10.99 -0.09 11.06 16 16 O -0.52 -12.39 16.12 5.55 0.09 -12.31 16 17 C -0.15 -3.11 5.35 36.01 0.19 -2.92 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C 0.12 1.54 5.07 -2.53 -0.01 1.53 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.47 7.48 -51.93 -0.39 0.08 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.43 6.29 -51.93 -0.33 0.10 16 33 H 0.40 1.43 8.83 -40.82 -0.36 1.07 16 34 H 0.40 2.40 8.93 -40.82 -0.36 2.03 16 35 H 0.07 0.46 6.37 -51.93 -0.33 0.13 16 36 H 0.07 0.53 7.06 -51.93 -0.37 0.17 16 37 H 0.06 0.62 5.52 -51.93 -0.29 0.33 16 38 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -36.79 377.58 -8.59 -45.38 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.27 Total: 0.82 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 0.53 Total: 1.13 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.46 Total: -46.45 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.16 Total: -19.27 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.79 -8.59 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.704 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds