Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08995 * 109.47436 * 54.97048 * 3 2 1 5 5 N 1.46900 * 109.47139 * 294.96752 * 3 2 1 6 6 C 1.46894 * 111.00071 * 154.55409 * 5 3 2 7 7 C 1.53039 * 109.46289 * 273.53579 * 6 5 3 8 8 C 1.53194 * 109.31285 * 178.59771 * 7 6 5 9 9 N 1.46922 * 108.76461 * 54.65855 * 8 7 6 10 10 C 1.34778 * 120.63256 * 126.35795 * 9 8 7 11 11 O 1.21276 * 120.00516 * 180.02562 * 10 9 8 12 12 C 1.50702 * 119.99699 * 0.02712 * 10 9 8 13 13 S 1.81000 * 109.47198 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00050 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99920 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99753 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46793 * 59.99787 * 18 16 14 20 20 H 1.48492 * 109.47401 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47286 * 300.00497 * 18 16 14 22 22 C 1.46924 * 118.73735 * 306.38521 * 9 8 7 23 23 C 1.53040 * 109.46240 * 153.48342 * 6 5 3 24 24 C 1.50702 * 109.47147 * 174.96892 * 3 2 1 25 25 N 1.34776 * 119.99799 * 300.00384 * 24 3 2 26 26 O 1.21282 * 119.99870 * 119.99799 * 24 3 2 27 27 H 1.09000 * 109.46854 * 55.87512 * 1 2 3 28 28 H 1.09004 * 109.47258 * 175.86766 * 1 2 3 29 29 H 1.08994 * 109.47433 * 295.87224 * 1 2 3 30 30 H 1.09008 * 109.46987 * 239.99921 * 2 1 3 31 31 H 1.09001 * 109.46753 * 120.00334 * 2 1 3 32 32 H 1.00900 * 111.00059 * 278.51296 * 5 3 2 33 33 H 1.09003 * 109.46171 * 33.51071 * 6 5 3 34 34 H 1.08993 * 109.49934 * 298.57025 * 7 6 5 35 35 H 1.09008 * 109.49639 * 58.66613 * 7 6 5 36 36 H 1.09002 * 109.59914 * 294.86801 * 8 7 6 37 37 H 1.08998 * 109.70032 * 174.51203 * 8 7 6 38 38 H 1.09005 * 109.47142 * 299.99165 * 12 10 9 39 39 H 1.08995 * 109.47516 * 59.99469 * 12 10 9 40 40 H 0.97003 * 120.00123 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.58516 * 293.81638 * 22 9 8 42 42 H 1.09002 * 109.70000 * 173.46629 * 22 9 8 43 43 H 1.09003 * 109.49785 * 301.33755 * 23 6 5 44 44 H 1.08993 * 109.49746 * 61.43154 * 23 6 5 45 45 H 0.96991 * 120.00578 * 359.97438 * 25 24 3 46 46 H 0.97002 * 119.99464 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 1.9817 0.8415 5 7 1.6521 2.0990 -1.2556 6 6 1.5629 3.5550 -1.0826 7 6 0.1669 3.9237 -0.5751 8 6 0.0889 5.4388 -0.3626 9 7 0.4740 6.1116 -1.6106 10 6 -0.3355 7.0304 -2.1736 11 8 -0.0065 7.5784 -3.2042 12 6 -1.6497 7.3768 -1.5223 13 16 -2.4999 8.6328 -2.5099 14 6 -3.9607 8.8419 -1.5471 15 1 -4.0992 8.2662 -0.6440 16 6 -4.9335 9.7466 -1.9495 17 7 -4.7649 10.4479 -3.0506 18 14 -6.4819 9.9688 -0.9285 19 1 -6.1136 10.4216 0.4370 20 1 -7.3549 10.9856 -1.5680 21 1 -7.2078 8.6761 -0.8422 22 6 1.7582 5.7632 -2.2337 23 6 1.8177 4.2445 -2.4249 24 6 3.5419 1.4443 0.1246 25 7 4.1291 0.8912 1.2043 26 8 4.2220 1.9433 -0.7468 27 1 -0.3633 0.5765 -0.8507 28 1 -0.3634 -1.0250 -0.0741 29 1 -0.3634 0.4484 0.9246 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2905 1.8617 -2.0000 33 1 2.3101 3.8812 -0.3592 34 1 -0.5791 3.6201 -1.3095 35 1 -0.0232 3.4138 0.3695 36 1 0.7707 5.7316 0.4359 37 1 -0.9295 5.7203 -0.0949 38 1 -2.2703 6.4829 -1.4584 39 1 -1.4674 7.7649 -0.5203 40 1 -5.4449 11.0798 -3.3320 41 1 2.5762 6.0826 -1.5879 42 1 1.8429 6.2570 -3.2018 43 1 2.8027 3.9630 -2.7973 44 1 1.0560 3.9379 -3.1417 45 1 3.5852 0.4924 1.9013 46 1 5.0958 0.8928 1.2846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199405985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = -84.153993 kcal Electronic energy + Delta-G solvation = -26182.827831 eV Core-core repulsion = 22425.936387 eV Total energy + Delta-G solvation = -3756.891444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59193 -39.71117 -37.64490 -35.86904 -34.39431 -33.22483 -32.40661 -31.54003 -30.54749 -28.82486 -26.82832 -25.46706 -23.95439 -23.31434 -22.59405 -20.83608 -20.53974 -18.97495 -18.16693 -17.67535 -17.39543 -16.71633 -15.83323 -15.60974 -15.38071 -15.21090 -15.02550 -14.78539 -14.48225 -14.39786 -14.01942 -13.76340 -13.69630 -13.17336 -12.83222 -12.69518 -12.61137 -12.43221 -12.25681 -12.00486 -11.74200 -11.46033 -11.34982 -11.27737 -11.03239 -11.02362 -10.91892 -10.75209 -10.56429 -10.47084 -10.19457 -9.78779 -9.29530 -9.03867 -8.86242 -8.47841 -8.19546 -6.47312 -6.19143 -3.89572 2.12127 2.98204 3.03967 3.10292 3.24726 3.27526 3.30673 3.62852 3.68522 4.22451 4.29269 4.49164 4.51101 4.64480 4.71196 4.88233 4.94137 5.04772 5.12193 5.13360 5.15703 5.23143 5.34942 5.42116 5.43366 5.55328 5.60735 5.61519 5.73748 5.74788 5.76419 5.90825 5.98904 6.01834 6.07879 6.14634 6.16715 6.24971 6.59051 6.70610 6.81824 7.02429 7.60685 7.62852 7.73664 8.37134 8.62012 9.25771 10.88223 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020510 B = 0.002397 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.827610 B =11678.819812 C =12560.116832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.067 3.933 4 H 0.106 0.894 5 N -0.656 5.656 6 C 0.091 3.909 7 C -0.122 4.122 8 C 0.108 3.892 9 N -0.619 5.619 10 C 0.535 3.465 11 O -0.518 6.518 12 C -0.150 4.150 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.117 3.883 23 C -0.134 4.134 24 C 0.488 3.512 25 N -0.854 5.854 26 O -0.543 6.543 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.354 0.646 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.402 0.598 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.374 -23.449 11.934 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.048 4.048 4 H 0.123 0.877 5 N -0.288 5.288 6 C -0.018 4.018 7 C -0.161 4.161 8 C -0.016 4.016 9 N -0.356 5.356 10 C 0.323 3.677 11 O -0.392 6.392 12 C -0.300 4.300 13 S 0.165 5.835 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.006 4.006 23 C -0.172 4.172 24 C 0.271 3.729 25 N -0.418 5.418 26 O -0.419 6.419 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.230 0.770 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 15.376 -22.211 9.675 28.694 hybrid contribution -0.157 -0.573 2.507 2.577 sum 15.220 -22.784 12.182 29.986 Atomic orbital electron populations 1.21684 0.94016 1.01672 1.02945 1.21454 0.97837 0.92959 1.02088 1.21881 0.88748 0.98306 0.95833 0.87656 1.60795 1.54262 1.08471 1.05258 1.21499 0.96552 0.86542 0.97231 1.21967 0.97278 0.94906 1.01986 1.21716 1.01903 0.91862 0.86101 1.48100 1.20135 1.41658 1.25671 1.20324 0.85020 0.78017 0.84320 1.90686 1.74190 1.51064 1.23269 1.23549 0.96430 1.05605 1.04460 1.85412 1.19104 1.46087 1.32868 1.22816 1.05089 1.28138 1.12276 0.91017 1.24991 0.98402 0.94805 0.95393 1.70010 1.34723 1.23785 1.21765 0.86231 0.81379 0.78089 0.79835 1.19969 1.20831 1.19936 1.21442 0.84957 0.94231 1.00009 1.22077 1.02747 0.95345 0.97058 1.22035 0.92763 0.76683 0.81415 1.43983 1.11567 1.62297 1.23937 1.90762 1.65704 1.45234 1.40226 0.90678 0.92965 0.93005 0.91353 0.91745 0.82475 0.93594 0.90327 0.91098 0.91869 0.88965 0.89242 0.89361 0.92147 0.92076 0.88624 0.90649 0.90477 0.76966 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.85 37.16 0.37 -0.44 16 2 C -0.10 -0.51 5.55 -26.73 -0.15 -0.66 16 3 C 0.07 0.42 2.21 -68.86 -0.15 0.26 16 4 H 0.11 0.57 7.22 -51.93 -0.37 0.19 16 5 N -0.66 -5.40 5.30 -100.92 -0.53 -5.94 16 6 C 0.09 0.86 2.10 -67.68 -0.14 0.71 16 7 C -0.12 -1.15 5.58 -26.61 -0.15 -1.30 16 8 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 9 N -0.62 -9.10 2.97 -172.77 -0.51 -9.61 16 10 C 0.54 10.47 7.72 -10.98 -0.08 10.38 16 11 O -0.52 -12.16 15.28 5.56 0.08 -12.07 16 12 C -0.15 -3.09 4.50 36.01 0.16 -2.93 16 13 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 14 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 18 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 C 0.12 1.53 6.43 -3.72 -0.02 1.50 16 23 C -0.13 -1.45 5.35 -26.62 -0.14 -1.59 16 24 C 0.49 3.70 7.15 -10.98 -0.08 3.62 16 25 N -0.85 -3.35 8.73 31.22 0.27 -3.08 16 26 O -0.54 -6.44 16.49 5.56 0.09 -6.35 16 27 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.18 7.43 -51.93 -0.39 -0.20 16 32 H 0.35 3.31 7.31 -39.29 -0.29 3.02 16 33 H 0.05 0.46 7.64 -51.93 -0.40 0.07 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.53 7.53 -51.92 -0.39 0.14 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 38 H 0.09 1.70 7.69 -51.91 -0.40 1.31 16 39 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.43 7.01 -51.93 -0.36 1.06 16 43 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.40 0.43 8.19 -40.82 -0.33 0.09 16 46 H 0.40 1.39 8.93 -40.82 -0.36 1.03 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -36.39 382.89 -8.89 -45.28 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.34 Total: 1.32 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.22 Total: -2.24 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.04 Total: -44.22 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.39 -8.89 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199405985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.875 kcal (2) G-P(sol) polarization free energy of solvation -36.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds