Wall clock time and date at job start Tue Mar 31 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39988 * 120.45812 * 150.54436 * 3 2 1 5 5 C 1.38224 * 118.36632 * 179.97438 * 4 3 2 6 6 C 1.39491 * 119.20436 * 359.97438 * 5 4 3 7 7 C 1.47987 * 119.56851 * 180.02562 * 6 5 4 8 8 O 1.21545 * 119.99843 * 351.95241 * 7 6 5 9 9 N 1.34781 * 120.00412 * 171.95308 * 7 6 5 10 10 C 1.47500 * 118.75838 * 180.10646 * 9 7 6 11 11 C 1.53199 * 111.23826 * 221.50649 * 10 9 7 12 12 C 1.51534 * 109.42763 * 40.27117 * 11 10 9 13 13 O 1.42154 * 108.76434 * 268.50367 * 12 11 10 14 14 C 1.38014 * 119.44129 * 87.21560 * 13 12 11 15 15 H 1.08999 * 109.46402 * 56.57571 * 14 13 12 16 16 C 1.52989 * 109.47133 * 176.56890 * 14 13 12 17 17 N 1.46502 * 109.47424 * 300.01615 * 16 14 13 18 18 C 1.36935 * 120.00127 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00125 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00114 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00382 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47050 * 89.99952 * 22 20 18 24 24 H 1.48494 * 109.47583 * 210.00690 * 22 20 18 25 25 H 1.48505 * 109.47089 * 330.00477 * 22 20 18 26 26 C 1.45117 * 118.75130 * 0.37581 * 9 7 6 27 27 N 1.32819 * 120.86357 * 0.02562 * 6 5 4 28 28 C 1.31299 * 121.78755 * 359.97438 * 27 6 5 29 29 H 4.52938 * 13.94604 * 0.02562 * 4 2 1 30 30 H 1.07991 * 120.81731 * 359.70190 * 4 3 2 31 31 H 1.07992 * 120.39667 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.17166 * 342.03383 * 10 9 7 33 33 H 1.09002 * 109.16856 * 101.22921 * 10 9 7 34 34 H 1.08994 * 109.61159 * 280.22840 * 11 10 9 35 35 H 1.09009 * 109.42672 * 160.19451 * 11 10 9 36 36 H 1.09004 * 109.58665 * 148.72088 * 12 11 10 37 37 H 1.09002 * 109.59122 * 28.29045 * 12 11 10 38 38 H 1.09001 * 109.47211 * 60.01715 * 16 14 13 39 39 H 1.08998 * 109.47416 * 180.02562 * 16 14 13 40 40 H 0.97001 * 119.99578 * 359.97438 * 17 16 14 41 41 H 0.96995 * 120.00025 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.45748 * 210.72647 * 26 9 7 43 43 H 1.08998 * 109.46305 * 330.68915 * 26 9 7 44 44 H 1.08004 * 119.65119 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3152 1.0517 -0.5934 5 6 4.6965 1.0086 -0.5681 6 6 5.3327 -0.0717 0.0434 7 6 6.8113 -0.1257 0.0756 8 8 7.4628 0.6861 -0.5519 9 7 7.4354 -1.0750 0.8007 10 6 8.9101 -1.1019 0.8152 11 6 9.4399 -2.5362 0.7201 12 6 8.6014 -3.3187 -0.2704 13 8 7.5408 -3.9548 0.4304 14 6 6.3604 -3.2712 0.6404 15 1 5.9539 -2.9456 -0.3171 16 6 5.3547 -4.1915 1.3349 17 7 5.0986 -5.3608 0.4903 18 6 4.2249 -6.3290 0.9080 19 1 3.7250 -6.2308 1.8603 20 6 3.9818 -7.4367 0.1075 21 7 4.5915 -7.5567 -1.0528 22 14 2.7907 -8.7578 0.6776 23 1 1.4219 -8.4270 0.2062 24 1 3.2029 -10.0705 0.1190 25 1 2.8002 -8.8262 2.1610 26 6 6.6310 -2.0356 1.5329 27 7 4.6289 -1.0525 0.5971 28 6 3.3159 -1.0487 0.5940 29 1 -1.0500 -0.0006 0.0009 30 1 2.7958 1.8737 -1.0633 31 1 5.2762 1.8019 -1.0164 32 1 9.2870 -0.5246 -0.0291 33 1 9.2672 -0.6531 1.7421 34 1 9.3842 -3.0124 1.6989 35 1 10.4766 -2.5182 0.3837 36 1 9.2203 -4.0716 -0.7585 37 1 8.1904 -2.6399 -1.0177 38 1 5.7611 -4.5170 2.2925 39 1 4.4223 -3.6518 1.5003 40 1 5.5473 -5.4488 -0.3652 41 1 4.4219 -8.3308 -1.6120 42 1 7.1647 -2.3463 2.4312 43 1 5.6834 -1.5763 1.8143 44 1 2.7781 -1.8640 1.0549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201890042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:32 Heat of formation + Delta-G solvation = 59.688953 kcal Electronic energy + Delta-G solvation = -28559.168985 eV Core-core repulsion = 24673.071088 eV Total energy + Delta-G solvation = -3886.097897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22479 -39.66430 -38.37914 -35.40583 -34.94828 -34.35761 -33.01442 -32.38306 -31.13506 -30.58506 -28.64011 -26.76785 -25.59383 -24.52655 -23.84873 -22.67108 -21.60577 -20.83483 -19.83006 -19.39304 -17.64547 -17.30625 -17.08126 -16.35067 -16.17414 -15.91232 -15.59978 -15.26155 -14.91565 -14.53616 -14.33351 -14.19557 -13.74042 -13.48555 -13.42343 -13.16776 -12.98988 -12.61918 -12.37657 -12.21475 -12.02126 -11.82445 -11.63679 -11.23687 -10.97315 -10.87566 -10.76064 -10.67150 -10.36873 -10.19688 -10.03373 -9.91893 -9.63629 -9.30780 -9.20364 -9.00896 -8.78597 -8.40413 -6.79045 -5.65866 -2.93311 0.11377 0.95426 2.27420 2.43050 2.81488 3.03515 3.48429 3.53303 3.55510 3.71336 3.81223 4.02558 4.12113 4.41920 4.53942 4.66934 4.79066 4.82866 4.90477 4.95403 5.16717 5.33499 5.40303 5.44881 5.48996 5.53400 5.66157 5.67307 5.68723 5.73332 5.83324 5.84533 5.98251 6.12963 6.14092 6.24602 6.39693 6.45002 6.56218 6.78532 6.90214 7.18000 7.23595 7.49690 7.77062 7.99478 8.16584 8.52765 9.64011 10.24780 10.60278 11.57160 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.004849 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.175258 B = 5772.559207 C = 8617.348770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C -0.015 4.015 4 C -0.061 4.061 5 C -0.110 4.110 6 C 0.082 3.918 7 C 0.565 3.435 8 O -0.540 6.540 9 N -0.585 5.585 10 C 0.108 3.892 11 C -0.165 4.165 12 C 0.074 3.926 13 O -0.372 6.372 14 C 0.100 3.900 15 H 0.047 0.953 16 C 0.172 3.828 17 N -0.726 5.726 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.054 3.946 27 N -0.435 5.435 28 C 0.127 3.873 29 H 0.228 0.772 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.022 0.978 39 H 0.036 0.964 40 H 0.386 0.614 41 H 0.253 0.747 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 19.922 3.520 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.158 4.158 3 C -0.017 4.017 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.055 4.055 7 C 0.351 3.649 8 O -0.418 6.418 9 N -0.315 5.315 10 C -0.013 4.013 11 C -0.203 4.203 12 C -0.003 4.003 13 O -0.290 6.290 14 C 0.041 3.959 15 H 0.065 0.935 16 C 0.044 3.956 17 N -0.370 5.370 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.070 4.070 27 N -0.146 5.146 28 C -0.032 4.032 29 H 0.244 0.756 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.220 0.780 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.155 0.845 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.694 19.385 3.769 19.821 hybrid contribution -1.148 0.040 -0.509 1.257 sum 0.545 19.425 3.260 19.705 Atomic orbital electron populations 1.24962 0.95763 0.98162 0.97869 1.19642 0.91582 1.02269 1.02316 1.17179 0.88127 0.96415 1.00025 1.21647 0.93435 0.97486 0.96065 1.21959 0.94434 0.98824 0.97820 1.21259 0.94338 0.92369 0.97572 1.17990 0.86037 0.81384 0.79445 1.90760 1.65976 1.40552 1.44499 1.47841 1.06757 1.29699 1.47212 1.21822 0.78595 0.97871 1.03057 1.22429 1.00379 0.94993 1.02488 1.22096 0.88647 0.96386 0.93147 1.86423 1.23245 1.43740 1.75556 1.22117 0.85026 0.91246 0.97560 0.93504 1.20551 0.93255 0.88174 0.93653 1.42239 1.52461 1.20645 1.21651 1.19219 1.16628 0.98764 1.01929 0.91277 1.24717 1.00715 0.98725 0.96944 1.69680 1.46240 1.30471 1.11743 0.86223 0.80743 0.81690 0.77745 1.21903 1.21888 1.20817 1.23471 0.97929 0.90681 0.94876 1.68209 1.07722 1.23937 1.14714 1.23319 0.89412 0.96088 0.94381 0.75577 0.83724 0.83044 0.89147 0.91571 0.90019 0.89742 0.89400 0.93671 0.96028 0.94635 0.77974 0.93685 0.90907 0.84512 0.80937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.16 -1.68 13.28 -38.83 -0.52 -2.20 16 3 C -0.02 -0.17 5.75 -106.68 -0.61 -0.78 16 4 C -0.06 -0.60 9.89 -38.93 -0.39 -0.98 16 5 C -0.11 -1.22 9.61 -39.12 -0.38 -1.59 16 6 C 0.08 1.09 6.58 -82.98 -0.55 0.55 16 7 C 0.56 8.29 7.61 -12.26 -0.09 8.20 16 8 O -0.54 -8.79 15.64 5.33 0.08 -8.71 16 9 N -0.58 -8.07 2.20 -173.76 -0.38 -8.46 16 10 C 0.11 1.28 6.12 -3.39 -0.02 1.26 16 11 C -0.16 -1.91 5.78 -27.37 -0.16 -2.07 16 12 C 0.07 1.10 6.37 36.42 0.23 1.33 16 13 O -0.37 -6.95 9.18 -26.53 -0.24 -7.20 16 14 C 0.10 1.79 2.03 -25.79 -0.05 1.74 16 15 H 0.05 0.92 7.57 -51.93 -0.39 0.53 16 16 C 0.17 3.54 5.95 -4.05 -0.02 3.52 16 17 N -0.73 -19.04 5.49 -59.91 -0.33 -19.37 16 18 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 22 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.05 0.77 4.42 -3.83 -0.02 0.76 16 27 N -0.43 -5.88 4.74 -9.49 -0.04 -5.93 16 28 C 0.13 1.58 10.92 -17.15 -0.19 1.39 16 29 H 0.23 1.05 7.80 -54.09 -0.42 0.63 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.15 1.50 7.65 -52.49 -0.40 1.10 16 32 H 0.09 1.11 6.99 -51.92 -0.36 0.75 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 35 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.70 7.39 -51.93 -0.38 0.32 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 10.99 7.53 -40.82 -0.31 10.68 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 43 H 0.14 1.90 4.68 -72.07 -0.34 1.56 16 44 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -34.53 368.94 -8.04 -42.57 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.95 Total: 9.05 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.43 Total: 3.06 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.03 Total: -61.99 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.16 Total: -15.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.53 -8.04 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201890042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.264 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds