Wall clock time and date at job start Tue Mar 31 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39985 * 120.46401 * 93.89055 * 3 2 1 5 5 C 1.38224 * 118.37199 * 179.97438 * 4 3 2 6 6 C 1.39487 * 119.20162 * 359.97438 * 5 4 3 7 7 C 1.47999 * 119.56837 * 179.97438 * 6 5 4 8 8 O 1.21535 * 119.99638 * 8.06114 * 7 6 5 9 9 N 1.34776 * 120.00200 * 188.06195 * 7 6 5 10 10 C 1.47503 * 118.75843 * 179.67091 * 9 7 6 11 11 C 1.53569 * 111.03062 * 138.38771 * 10 9 7 12 12 C 1.51533 * 109.58035 * 320.02551 * 11 10 9 13 13 O 1.42149 * 108.75670 * 91.40265 * 12 11 10 14 14 C 1.38022 * 119.43752 * 272.76835 * 13 12 11 15 15 H 1.08996 * 109.46807 * 303.42507 * 14 13 12 16 16 C 1.53004 * 109.46776 * 183.42769 * 14 13 12 17 17 N 1.46498 * 109.46963 * 64.99248 * 16 14 13 18 18 C 1.36935 * 120.00353 * 179.72152 * 17 16 14 19 19 H 1.08004 * 119.99147 * 0.27900 * 18 17 16 20 20 C 1.38808 * 120.00421 * 180.27090 * 18 17 16 21 21 N 1.31617 * 120.00080 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47090 * 60.00484 * 22 20 18 24 24 H 1.48500 * 109.47190 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47425 * 300.00431 * 22 20 18 26 26 C 1.45126 * 118.75607 * 359.68848 * 9 7 6 27 27 N 1.32823 * 120.86350 * 0.26065 * 6 5 4 28 28 C 1.31291 * 121.78873 * 359.46243 * 27 6 5 29 29 H 4.52936 * 13.94824 * 0.02562 * 4 2 1 30 30 H 1.08001 * 120.81739 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.39797 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.17140 * 258.79023 * 10 9 7 33 33 H 1.09003 * 109.16899 * 17.98897 * 10 9 7 34 34 H 1.08998 * 109.45057 * 80.06053 * 11 10 9 35 35 H 1.09004 * 109.45273 * 199.98448 * 11 10 9 36 36 H 1.09004 * 109.58520 * 211.18027 * 12 11 10 37 37 H 1.08996 * 109.59162 * 331.61668 * 12 11 10 38 38 H 1.08999 * 109.47319 * 304.99434 * 16 14 13 39 39 H 1.09002 * 109.46946 * 184.98970 * 16 14 13 40 40 H 0.97008 * 120.00004 * 359.97438 * 17 16 14 41 41 H 0.96993 * 119.99956 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.45779 * 149.24127 * 26 9 7 43 43 H 1.09001 * 109.44931 * 29.27737 * 26 9 7 44 44 H 1.08001 * 119.65491 * 180.27362 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3157 0.0828 -1.2038 5 6 4.6970 0.0806 -1.1534 6 6 5.3327 -0.0023 0.0854 7 6 6.8113 -0.0060 0.1487 8 8 7.4630 0.2096 -0.8542 9 7 7.4351 -0.2483 1.3186 10 6 8.9098 -0.2526 1.3489 11 6 9.4374 0.4597 2.6030 12 6 8.5961 1.6891 2.8805 13 8 7.5359 1.3294 3.7564 14 6 6.3567 0.8423 3.2298 15 1 5.9489 1.5646 2.5227 16 6 5.3510 0.6110 4.3595 17 7 5.0011 1.8948 4.9723 18 6 4.1066 1.9380 6.0082 19 1 3.6626 1.0249 6.3765 20 6 3.7707 3.1550 6.5851 21 7 4.3116 4.2677 6.1361 22 14 2.5500 3.2137 7.9978 23 1 3.0681 2.4092 9.1335 24 1 2.3631 4.6213 8.4323 25 1 1.2480 2.6573 7.5504 26 6 6.6305 -0.4955 2.5008 27 7 4.6283 -0.0837 1.2086 28 6 3.3154 -0.0793 1.2035 29 1 -1.0500 0.0005 0.0000 30 1 2.7967 0.1464 -2.1488 31 1 5.2771 0.1422 -2.0623 32 1 9.2649 -1.2831 1.3466 33 1 9.2875 0.2570 0.4624 34 1 9.3825 -0.2176 3.4552 35 1 10.4736 0.7574 2.4425 36 1 9.2130 2.4559 3.3491 37 1 8.1847 2.0691 1.9454 38 1 5.7934 -0.0420 5.1118 39 1 4.4525 0.1441 3.9561 40 1 5.4002 2.7149 4.6417 41 1 4.0767 5.1181 6.5389 42 1 7.1650 -1.1705 3.1692 43 1 5.6840 -0.9494 2.2072 44 1 2.7772 -0.1426 2.1377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201890044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:36 Heat of formation + Delta-G solvation = 59.618461 kcal Electronic energy + Delta-G solvation = -28582.382234 eV Core-core repulsion = 24696.281281 eV Total energy + Delta-G solvation = -3886.100954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21201 -39.65093 -38.37634 -35.39715 -34.93973 -34.35542 -33.00121 -32.36670 -31.12908 -30.57577 -28.63021 -26.77391 -25.58605 -24.52011 -23.83061 -22.66261 -21.59794 -20.85516 -19.83271 -19.37556 -17.63725 -17.29749 -17.07544 -16.35716 -16.15898 -15.89693 -15.58815 -15.25362 -14.90995 -14.53258 -14.32231 -14.19347 -13.73088 -13.47720 -13.42004 -13.16014 -12.99685 -12.61111 -12.36165 -12.20655 -12.02086 -11.83273 -11.63172 -11.23671 -10.95866 -10.86623 -10.74742 -10.67865 -10.36319 -10.20276 -10.03309 -9.92719 -9.63798 -9.30960 -9.19594 -8.99258 -8.78613 -8.40059 -6.79719 -5.66173 -2.93735 0.13061 0.97259 2.28873 2.45035 2.82149 3.04965 3.48783 3.53001 3.54332 3.72683 3.83256 4.04248 4.11601 4.43298 4.55865 4.66683 4.80374 4.82148 4.91525 4.95740 5.16709 5.33960 5.40925 5.45564 5.49738 5.54178 5.65851 5.67183 5.70058 5.73443 5.83441 5.86264 5.97889 6.13449 6.14243 6.24742 6.39715 6.45129 6.57342 6.78666 6.90337 7.19455 7.24674 7.51341 7.76375 8.00230 8.16071 8.52370 9.63487 10.23996 10.59259 11.56813 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008382 B = 0.004948 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.533934 B = 5657.753093 C = 8517.701474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C -0.015 4.015 4 C -0.061 4.061 5 C -0.110 4.110 6 C 0.081 3.919 7 C 0.565 3.435 8 O -0.540 6.540 9 N -0.585 5.585 10 C 0.108 3.892 11 C -0.164 4.164 12 C 0.074 3.926 13 O -0.373 6.373 14 C 0.100 3.900 15 H 0.048 0.952 16 C 0.172 3.828 17 N -0.726 5.726 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.054 3.946 27 N -0.435 5.435 28 C 0.128 3.872 29 H 0.228 0.772 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -11.890 -15.829 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.158 4.158 3 C -0.017 4.017 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.056 4.056 7 C 0.352 3.648 8 O -0.418 6.418 9 N -0.316 5.316 10 C -0.014 4.014 11 C -0.203 4.203 12 C -0.003 4.003 13 O -0.291 6.291 14 C 0.040 3.960 15 H 0.066 0.934 16 C 0.044 3.956 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.070 4.070 27 N -0.146 5.146 28 C -0.031 4.031 29 H 0.244 0.756 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.155 0.845 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.400 -11.876 -15.241 19.470 hybrid contribution -1.181 0.445 -0.278 1.292 sum 1.220 -11.431 -15.520 19.314 Atomic orbital electron populations 1.24962 0.95760 0.97768 0.98276 1.19641 0.91583 1.02296 1.02272 1.17179 0.88133 1.01507 0.94924 1.21645 0.93431 0.95571 0.97986 1.21952 0.94437 0.97755 0.98926 1.21260 0.94326 0.99990 0.89990 1.17990 0.86045 0.77262 0.83533 1.90757 1.65970 1.50328 1.34739 1.47841 1.06753 1.67980 1.08977 1.21899 0.78608 1.01034 0.99827 1.22488 1.00357 0.99330 0.98084 1.22086 0.88625 0.95288 0.94257 1.86417 1.23398 1.83007 1.36288 1.22127 0.84982 0.92839 0.96021 0.93406 1.20549 0.92928 0.90537 0.91631 1.42243 1.52113 1.02998 1.39661 1.19172 1.16371 0.92798 1.08264 0.91317 1.24711 1.00789 0.95487 1.00063 1.69664 1.47043 0.97233 1.44247 0.86300 0.81110 0.76419 0.82541 1.21343 1.21815 1.21410 1.23480 0.97951 0.99647 0.85908 1.68197 1.07719 1.10716 1.27943 1.23324 0.89409 0.92802 0.97549 0.75581 0.83736 0.83062 0.91540 0.89148 0.90064 0.89771 0.89417 0.93639 0.95949 0.94579 0.78073 0.93623 0.90940 0.84451 0.80917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 19.25 29.55 0.57 -0.77 16 2 C -0.16 -1.72 13.28 -38.84 -0.52 -2.24 16 3 C -0.02 -0.17 5.75 -106.69 -0.61 -0.79 16 4 C -0.06 -0.61 9.89 -38.93 -0.39 -0.99 16 5 C -0.11 -1.24 9.61 -39.12 -0.38 -1.61 16 6 C 0.08 1.10 6.58 -82.97 -0.55 0.55 16 7 C 0.56 8.34 7.61 -12.26 -0.09 8.25 16 8 O -0.54 -8.83 15.64 5.34 0.08 -8.74 16 9 N -0.59 -8.09 2.19 -173.53 -0.38 -8.47 16 10 C 0.11 1.28 6.16 -3.20 -0.02 1.26 16 11 C -0.16 -1.89 5.78 -27.18 -0.16 -2.05 16 12 C 0.07 1.10 6.37 36.42 0.23 1.33 16 13 O -0.37 -6.94 9.38 -26.56 -0.25 -7.19 16 14 C 0.10 1.78 1.98 -25.78 -0.05 1.73 16 15 H 0.05 0.95 7.58 -51.93 -0.39 0.55 16 16 C 0.17 3.54 5.92 -4.04 -0.02 3.51 16 17 N -0.73 -18.99 5.54 -59.91 -0.33 -19.32 16 18 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 22 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.05 0.77 4.42 -3.83 -0.02 0.75 16 27 N -0.43 -5.96 4.74 -9.49 -0.04 -6.01 16 28 C 0.13 1.63 10.92 -17.15 -0.19 1.44 16 29 H 0.23 1.11 7.80 -54.09 -0.42 0.68 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.15 1.52 7.65 -52.49 -0.40 1.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.11 6.99 -51.93 -0.36 0.74 16 34 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.71 7.40 -51.93 -0.38 0.32 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 10.93 7.65 -40.82 -0.31 10.62 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.07 0.99 8.11 -51.93 -0.42 0.56 16 43 H 0.14 1.92 4.67 -72.56 -0.34 1.58 16 44 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -34.38 369.26 -8.05 -42.43 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.96 Total: 9.26 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.43 Total: 3.06 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.03 Total: -61.99 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.17 Total: -15.93 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.38 -8.05 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201890044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.048 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds