Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39724 * 119.59376 * 75.27301 * 3 2 1 5 5 C 1.37977 * 119.20205 * 180.02562 * 4 3 2 6 6 C 1.40231 * 118.40011 * 359.97438 * 5 4 3 7 7 C 1.47680 * 120.44050 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00100 * 53.37860 * 7 6 5 9 9 N 1.34778 * 119.99751 * 233.38473 * 7 6 5 10 10 C 1.47511 * 118.75445 * 170.36701 * 9 7 6 11 11 C 1.53566 * 111.02870 * 138.38797 * 10 9 7 12 12 C 1.51533 * 109.58064 * 320.02157 * 11 10 9 13 13 O 1.42151 * 108.75620 * 91.40416 * 12 11 10 14 14 C 1.38015 * 119.44069 * 272.77075 * 13 12 11 15 15 H 1.09005 * 109.46500 * 303.42270 * 14 13 12 16 16 C 1.53002 * 109.47368 * 183.42949 * 14 13 12 17 17 N 1.46498 * 109.47198 * 64.98756 * 16 14 13 18 18 C 1.36930 * 120.00278 * 179.72651 * 17 16 14 19 19 H 1.08007 * 119.99856 * 0.27975 * 18 17 16 20 20 C 1.38812 * 120.00575 * 180.27546 * 18 17 16 21 21 N 1.31627 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00396 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46789 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47034 * 119.99812 * 22 20 18 25 25 H 1.48490 * 109.47038 * 239.99865 * 22 20 18 26 26 C 1.45125 * 118.75647 * 350.38315 * 9 7 6 27 27 C 1.39661 * 119.12240 * 0.25996 * 6 5 4 28 28 N 1.31483 * 120.70812 * 359.47234 * 27 6 5 29 29 H 4.51262 * 14.17558 * 0.02562 * 4 2 1 30 30 H 1.08003 * 120.39564 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.79654 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.16321 * 258.79017 * 10 9 7 33 33 H 1.08996 * 109.16693 * 17.98950 * 10 9 7 34 34 H 1.09003 * 109.45343 * 80.05294 * 11 10 9 35 35 H 1.09000 * 109.45319 * 199.98447 * 11 10 9 36 36 H 1.09002 * 109.59412 * 211.18054 * 12 11 10 37 37 H 1.08996 * 109.59544 * 331.61850 * 12 11 10 38 38 H 1.09001 * 109.46612 * 304.98712 * 16 14 13 39 39 H 1.08997 * 109.47268 * 184.98798 * 16 14 13 40 40 H 0.97003 * 119.99977 * 0.02562 * 17 16 14 41 41 H 0.96998 * 120.00023 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.45498 * 149.24261 * 26 9 7 43 43 H 1.08992 * 109.44857 * 29.28084 * 26 9 7 44 44 H 1.07994 * 119.64706 * 179.74339 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2962 -0.3079 -1.1751 5 6 4.6759 -0.3054 -1.1658 6 6 5.3343 0.0096 0.0316 7 6 6.8097 0.0251 0.0925 8 8 7.4441 0.6888 -0.7044 9 7 7.4530 -0.6967 1.0315 10 6 8.9186 -0.8361 0.9388 11 6 9.5733 -0.7032 2.3216 12 6 8.8829 0.3934 3.1070 13 8 7.8283 -0.1828 3.8664 14 6 6.5819 -0.3312 3.2926 15 1 6.2250 0.6378 2.9436 16 6 5.6062 -0.8905 4.3300 17 7 5.4240 0.0869 5.4059 18 6 4.5846 -0.1935 6.4508 19 1 4.0603 -1.1372 6.4841 20 6 4.4075 0.7350 7.4674 21 7 5.0469 1.8849 7.4271 22 14 3.2629 0.3522 8.8931 23 1 2.6711 -0.9966 8.7043 24 1 4.0292 0.3824 10.1649 25 1 2.1793 1.3662 8.9440 26 6 6.6776 -1.3076 2.0952 27 6 4.5762 0.3027 1.1674 28 7 3.2623 0.2951 1.1180 29 1 -1.0500 0.0004 -0.0004 30 1 2.7561 -0.5463 -2.0795 31 1 5.2353 -0.5404 -2.0592 32 1 9.1593 -1.8137 0.5213 33 1 9.3110 -0.0606 0.2811 34 1 9.4818 -1.6472 2.8588 35 1 10.6279 -0.4550 2.2015 36 1 9.5986 0.8687 3.7778 37 1 8.4755 1.1346 2.4194 38 1 6.0070 -1.8159 4.7438 39 1 4.6460 -1.0910 3.8548 40 1 5.8946 0.9346 5.3759 41 1 4.9228 2.5339 8.1373 42 1 7.1639 -2.2289 2.4159 43 1 5.6759 -1.5339 1.7301 44 1 5.0745 0.5424 2.0950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201891998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = 54.454501 kcal Electronic energy + Delta-G solvation = -28456.722908 eV Core-core repulsion = 24570.398028 eV Total energy + Delta-G solvation = -3886.324880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.32554 -39.80799 -38.57002 -35.49506 -35.02807 -34.12900 -33.12897 -32.79962 -31.15339 -30.67313 -28.91742 -26.90489 -25.63620 -24.62644 -23.93024 -22.79492 -21.71752 -21.14595 -19.76628 -19.56737 -17.81113 -17.47688 -17.20288 -16.69258 -16.49612 -16.07695 -15.57092 -15.35279 -14.85787 -14.43788 -14.32667 -14.18969 -13.89640 -13.59301 -13.47379 -13.23101 -13.08316 -12.64679 -12.60699 -12.37967 -12.17541 -11.93388 -11.48838 -11.33197 -11.04813 -10.96913 -10.79504 -10.77871 -10.39470 -10.32623 -10.17610 -9.99070 -9.69516 -9.63010 -9.42022 -9.01459 -8.84630 -8.70815 -6.86931 -5.69773 -2.98498 0.21844 0.97726 2.24723 2.43307 2.61121 2.81422 3.48322 3.53478 3.55953 3.69387 3.77467 3.83809 4.13634 4.40865 4.54960 4.58035 4.68633 4.75657 4.79664 4.85974 4.89294 5.03500 5.09012 5.18479 5.35910 5.37774 5.46602 5.55678 5.62267 5.63610 5.69956 5.71473 5.75700 5.85886 5.95720 6.05125 6.24405 6.25564 6.31594 6.54584 6.68157 7.03874 7.23209 7.65133 7.75402 7.82214 7.87828 8.47767 9.59952 10.15567 10.51167 11.53057 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008338 B = 0.004776 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.319425 B = 5861.635266 C = 8780.720719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C 0.243 3.757 4 C -0.153 4.153 5 C -0.026 4.026 6 C -0.182 4.182 7 C 0.564 3.436 8 O -0.530 6.530 9 N -0.602 5.602 10 C 0.110 3.890 11 C -0.165 4.165 12 C 0.070 3.930 13 O -0.362 6.362 14 C 0.080 3.920 15 H 0.054 0.946 16 C 0.162 3.838 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.063 3.937 27 C 0.131 3.869 28 N -0.454 5.454 29 H 0.231 0.769 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 -7.371 -19.791 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.108 3.892 4 C -0.173 4.173 5 C -0.052 4.052 6 C -0.187 4.187 7 C 0.352 3.648 8 O -0.407 6.407 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.204 4.204 12 C -0.006 4.006 13 O -0.280 6.280 14 C 0.020 3.980 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.369 5.369 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.061 4.061 27 C -0.028 4.028 28 N -0.162 5.162 29 H 0.248 0.752 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.024 -6.992 -19.171 20.506 hybrid contribution -0.184 -0.015 -0.188 0.263 sum 1.840 -7.006 -19.359 20.670 Atomic orbital electron populations 1.24961 0.95634 0.96453 0.97932 1.19262 0.91040 1.02841 1.02076 1.16836 0.88391 0.94435 0.89490 1.21954 0.94227 1.02102 0.99011 1.21451 0.93770 0.93298 0.96699 1.21042 0.94631 1.06604 0.96399 1.18200 0.86777 0.78963 0.80898 1.90784 1.67805 1.40688 1.41455 1.47835 1.07782 1.51500 1.26255 1.21893 0.78119 1.02719 0.98391 1.22496 1.00475 1.01891 0.95490 1.22190 0.89370 0.94102 0.94956 1.86472 1.18030 1.81317 1.42163 1.22617 0.85355 0.96678 0.93389 0.92879 1.20671 0.93333 0.93883 0.88726 1.42192 1.54238 1.18042 1.22386 1.19232 1.17965 1.00800 0.98766 0.91117 1.24720 1.00579 0.96514 0.99014 1.69683 1.45945 1.07860 1.34490 0.86129 0.80212 0.77338 0.82588 1.20562 1.21943 1.21912 1.22803 0.97152 0.98203 0.87953 1.23941 0.88861 0.92008 0.98027 1.67949 1.09486 1.12137 1.26621 0.75248 0.83650 0.83616 0.91397 0.88833 0.89959 0.89528 0.88931 0.93188 0.95085 0.94543 0.77896 0.93630 0.88691 0.89189 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 19.25 29.55 0.57 -0.69 16 2 C -0.15 -1.90 13.43 -38.84 -0.52 -2.42 16 3 C 0.24 3.29 6.59 -84.91 -0.56 2.73 16 4 C -0.15 -1.60 9.77 -39.12 -0.38 -1.98 16 5 C -0.03 -0.28 9.90 -38.93 -0.39 -0.67 16 6 C -0.18 -2.38 4.83 -104.76 -0.51 -2.89 16 7 C 0.56 7.77 7.15 -12.40 -0.09 7.68 16 8 O -0.53 -8.54 16.38 5.31 0.09 -8.46 16 9 N -0.60 -7.34 2.19 -173.65 -0.38 -7.72 16 10 C 0.11 1.14 6.21 -3.19 -0.02 1.12 16 11 C -0.17 -1.66 5.78 -27.18 -0.16 -1.81 16 12 C 0.07 0.93 6.37 36.42 0.23 1.16 16 13 O -0.36 -6.08 9.38 -26.54 -0.25 -6.33 16 14 C 0.08 1.28 1.73 -25.78 -0.04 1.24 16 15 H 0.05 0.92 5.65 -51.93 -0.29 0.62 16 16 C 0.16 3.20 5.84 -4.04 -0.02 3.17 16 17 N -0.72 -18.50 5.54 -59.91 -0.33 -18.83 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 C 0.06 0.79 4.41 -3.83 -0.02 0.77 16 27 C 0.13 1.94 8.74 -17.17 -0.15 1.79 16 28 N -0.45 -7.28 10.27 -10.78 -0.11 -7.39 16 29 H 0.23 1.17 7.80 -54.09 -0.42 0.75 16 30 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.03 6.93 -51.93 -0.36 0.67 16 34 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.39 10.58 7.65 -40.82 -0.31 10.27 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.09 1.10 5.48 -51.93 -0.28 0.81 16 44 H 0.18 2.87 3.52 -52.49 -0.18 2.68 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -35.13 366.72 -7.64 -42.78 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.58 Total: 8.70 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.30 Total: 1.92 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.10 Total: -61.83 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.16 Total: -14.79 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.13 -7.64 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.230 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds