Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47071 * 300.00490 * 3 2 1 6 6 H 1.48500 * 109.46858 * 59.99778 * 3 2 1 7 7 C 1.38820 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99604 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99747 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.45893 * 184.99870 * 11 10 9 13 13 C 1.53187 * 109.31473 * 178.61573 * 12 11 10 14 14 N 1.46925 * 108.77849 * 54.63223 * 13 12 11 15 15 C 1.34775 * 120.63185 * 126.37001 * 14 13 12 16 16 O 1.21720 * 119.99961 * 4.26663 * 15 14 13 17 17 C 1.46585 * 120.00244 * 184.26751 * 15 14 13 18 18 C 1.40638 * 126.53865 * 310.42211 * 17 15 14 19 19 N 1.30699 * 108.72622 * 180.02562 * 18 17 15 20 20 N 1.39904 * 109.52211 * 359.97438 * 19 18 17 21 21 C 1.36315 * 132.16347 * 180.29883 * 20 19 18 22 22 C 1.35755 * 119.15606 * 180.17553 * 21 20 19 23 23 C 1.39973 * 119.35396 * 359.50039 * 22 21 20 24 24 N 1.31500 * 120.10269 * 0.25376 * 23 22 21 25 25 C 1.33377 * 120.86029 * 359.97438 * 24 23 22 26 26 C 1.46922 * 118.73673 * 306.64567 * 14 13 12 27 27 C 1.52765 * 109.00801 * 53.30926 * 26 14 13 28 28 H 0.97000 * 119.99569 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00611 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47103 * 59.99502 * 10 9 7 31 31 H 1.09006 * 109.46825 * 299.99988 * 10 9 7 32 32 H 1.08994 * 109.45338 * 304.96021 * 11 10 9 33 33 H 1.09001 * 109.50171 * 58.66112 * 12 11 10 34 34 H 1.09007 * 109.52652 * 298.58180 * 12 11 10 35 35 H 1.09002 * 109.58772 * 294.84407 * 13 12 11 36 36 H 1.09005 * 109.70464 * 174.49486 * 13 12 11 37 37 H 1.08005 * 125.63745 * 359.97233 * 18 17 15 38 38 H 1.07996 * 120.42196 * 359.94803 * 21 20 19 39 39 H 1.07999 * 120.32447 * 179.77560 * 22 21 20 40 40 H 1.07992 * 119.94599 * 180.22998 * 23 22 21 41 41 H 1.09000 * 109.58690 * 173.14145 * 26 14 13 42 42 H 1.08998 * 109.58906 * 293.56610 * 26 14 13 43 43 H 1.09004 * 109.56236 * 185.54868 * 27 26 14 44 44 H 1.09004 * 109.35904 * 65.49945 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8249 -6.1414 0.1246 13 6 0.8245 -7.3010 0.1584 14 7 -0.0412 -7.2135 -1.0255 15 6 -0.1820 -8.2682 -1.8527 16 8 0.3483 -9.3296 -1.5812 17 6 -0.9739 -8.1371 -3.0793 18 6 -2.2713 -7.6048 -3.1854 19 7 -2.6447 -7.6559 -4.4369 20 7 -1.6213 -8.2181 -5.2075 21 6 -1.5183 -8.4790 -6.5415 22 6 -0.3810 -9.0462 -7.0186 23 6 0.6627 -9.3402 -6.1334 24 7 0.5361 -9.0724 -4.8522 25 6 -0.5803 -8.5194 -4.3760 26 6 -0.7455 -5.9524 -1.2939 27 6 0.2682 -4.8096 -1.3085 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8894 31 1 2.6847 -3.7146 -0.8906 32 1 0.3799 -4.7131 0.8408 33 1 2.4097 -6.1385 1.0444 34 1 2.4914 -6.2607 -0.7298 35 1 0.2171 -7.2334 1.0610 36 1 1.3612 -8.2498 0.1494 37 1 -2.8618 -7.2184 -2.3678 38 1 -2.3326 -8.2409 -7.2098 39 1 -0.2806 -9.2643 -8.0716 40 1 1.5732 -9.7880 -6.5032 41 1 -1.2426 -6.0104 -2.2622 42 1 -1.4835 -5.7725 -0.5122 43 1 -0.2551 -3.8587 -1.4086 44 1 0.9489 -4.9412 -2.1497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205839407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = 101.604064 kcal Electronic energy + Delta-G solvation = -27686.794907 eV Core-core repulsion = 23834.807337 eV Total energy + Delta-G solvation = -3851.987570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80090 -39.97084 -38.38648 -37.47069 -34.84184 -34.44882 -32.81336 -31.64671 -31.17251 -30.28112 -29.57117 -26.67972 -25.31772 -24.55541 -23.64059 -23.05180 -22.56139 -21.44198 -20.27670 -19.29531 -18.39095 -17.74535 -17.31999 -16.97362 -16.57283 -16.08883 -15.69757 -15.02904 -14.74631 -14.67540 -14.26796 -14.05070 -13.88208 -13.61122 -13.50590 -13.41104 -13.06795 -12.95632 -12.67742 -12.33842 -12.13408 -11.84016 -11.76572 -11.58169 -11.05652 -10.96228 -10.84140 -10.36091 -10.27698 -10.24097 -10.22257 -9.99994 -9.92386 -9.73460 -9.62218 -8.85607 -8.53927 -8.24557 -6.88944 -5.75418 -3.03025 0.03549 0.40728 1.56301 1.94598 2.72471 2.96374 3.31974 3.42717 3.43897 3.49832 3.51901 3.71497 3.92268 4.40554 4.57478 4.60595 4.67978 4.82907 4.95503 4.99918 5.04053 5.15345 5.21406 5.31439 5.45040 5.50096 5.58743 5.59771 5.71682 5.81197 5.90268 6.00836 6.03749 6.07914 6.15590 6.26696 6.34725 6.52235 6.56584 6.71249 6.86049 6.94264 6.97466 7.21700 7.51126 7.72578 8.30998 8.44189 9.55343 10.14059 10.48940 11.47722 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.002755 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.760162 B =10160.817139 C =10968.830363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.093 4.093 12 C -0.126 4.126 13 C 0.116 3.884 14 N -0.603 5.603 15 C 0.604 3.396 16 O -0.538 6.538 17 C -0.277 4.277 18 C 0.128 3.872 19 N -0.308 5.308 20 N -0.308 5.308 21 C 0.168 3.832 22 C -0.225 4.225 23 C 0.186 3.814 24 N -0.452 5.452 25 C 0.308 3.692 26 C 0.102 3.898 27 C -0.124 4.124 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.207 0.793 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -20.971 -13.405 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.165 4.165 13 C -0.006 4.006 14 N -0.336 5.336 15 C 0.391 3.609 16 O -0.416 6.416 17 C -0.293 4.293 18 C -0.053 4.053 19 N -0.130 5.130 20 N -0.077 5.077 21 C 0.032 3.968 22 C -0.249 4.249 23 C 0.003 3.997 24 N -0.163 5.163 25 C 0.078 3.922 26 C -0.021 4.021 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.201 0.799 39 H 0.189 0.811 40 H 0.201 0.799 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.256 -21.227 -13.218 25.365 hybrid contribution 0.100 1.175 -0.199 1.196 sum -4.156 -20.052 -13.417 24.482 Atomic orbital electron populations 1.69666 1.05059 1.25443 1.58174 1.24726 0.95535 0.97631 1.03246 0.86128 0.78807 0.84201 0.77152 1.20599 1.21937 1.21896 1.19288 0.91066 0.84245 1.42121 0.91234 1.42388 1.05827 1.00006 1.89414 1.20673 0.93199 0.85382 0.97705 1.21298 0.97839 0.94426 0.97643 1.21915 0.97785 0.94093 1.02668 1.21607 0.92359 1.00021 0.86589 1.47964 1.47075 1.12501 1.26033 1.16783 0.79460 0.83308 0.81318 1.90785 1.49200 1.27245 1.74328 1.19317 0.98506 1.19429 0.92080 1.24173 0.93427 0.93077 0.94610 1.77621 1.08174 1.23735 1.03421 1.46989 1.13583 1.39994 1.07103 1.22161 0.99812 0.93233 0.81579 1.21927 0.93816 1.05572 1.03573 1.23589 0.98436 0.90332 0.87366 1.68234 1.19518 1.12848 1.15672 1.20271 0.84668 0.95928 0.91364 1.21916 0.95202 0.83240 1.01705 1.21832 0.98072 0.98149 0.98181 0.93635 0.78279 0.96335 0.96501 0.90911 0.90616 0.91632 0.91468 0.89198 0.77625 0.79917 0.81107 0.79897 0.90019 0.90959 0.89434 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.44 5.32 -59.91 -0.32 -18.76 16 10 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 11 C -0.09 -1.49 2.19 -90.58 -0.20 -1.69 16 12 C -0.13 -1.73 5.36 -26.61 -0.14 -1.87 16 13 C 0.12 1.53 6.42 -3.71 -0.02 1.51 16 14 N -0.60 -8.37 2.98 -174.61 -0.52 -8.89 16 15 C 0.60 9.46 7.55 -12.90 -0.10 9.36 16 16 O -0.54 -10.12 16.54 5.17 0.09 -10.04 16 17 C -0.28 -3.87 5.17 -104.66 -0.54 -4.42 16 18 C 0.13 1.46 9.58 -17.13 -0.16 1.29 16 19 N -0.31 -3.65 12.58 30.76 0.39 -3.26 16 20 N -0.31 -3.41 3.86 -11.97 -0.05 -3.46 16 21 C 0.17 1.09 11.29 -16.45 -0.19 0.91 16 22 C -0.23 -1.00 10.05 -39.82 -0.40 -1.40 16 23 C 0.19 1.30 11.28 -17.04 -0.19 1.11 16 24 N -0.45 -5.66 10.47 -12.00 -0.13 -5.78 16 25 C 0.31 4.15 7.90 -155.83 -1.23 2.92 16 26 C 0.10 1.30 5.84 -3.93 -0.02 1.27 16 27 C -0.12 -1.92 5.23 -26.83 -0.14 -2.06 16 28 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.38 9.99 6.84 -40.82 -0.28 9.71 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.25 7.03 -51.93 -0.36 0.88 16 37 H 0.21 1.67 7.59 -52.48 -0.40 1.27 16 38 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 40 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.08 0.97 4.55 -51.93 -0.24 0.73 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.52 7.15 -51.93 -0.37 1.15 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -37.94 363.29 -8.82 -46.76 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.85 Total: 5.08 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.61 Total: 2.77 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.10 Total: -67.55 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.94 -8.82 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205839407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.363 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds