Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47071 * 300.00490 * 3 2 1 6 6 H 1.48500 * 109.46858 * 59.99778 * 3 2 1 7 7 C 1.38820 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99604 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99747 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.45893 * 184.99870 * 11 10 9 13 13 C 1.53187 * 109.31473 * 178.61573 * 12 11 10 14 14 N 1.46925 * 108.77849 * 54.63223 * 13 12 11 15 15 C 1.34775 * 120.63185 * 126.37001 * 14 13 12 16 16 O 1.21720 * 119.99961 * 4.26663 * 15 14 13 17 17 C 1.46585 * 120.00244 * 184.26751 * 15 14 13 18 18 C 1.40638 * 126.53865 * 310.42211 * 17 15 14 19 19 N 1.30699 * 108.72622 * 180.02562 * 18 17 15 20 20 N 1.39904 * 109.52211 * 359.97438 * 19 18 17 21 21 C 1.36315 * 132.16347 * 180.29883 * 20 19 18 22 22 C 1.35755 * 119.15606 * 180.17553 * 21 20 19 23 23 C 1.39973 * 119.35396 * 359.50039 * 22 21 20 24 24 N 1.31500 * 120.10269 * 0.25376 * 23 22 21 25 25 C 1.33377 * 120.86029 * 359.97438 * 24 23 22 26 26 C 1.46922 * 118.73673 * 306.64567 * 14 13 12 27 27 C 1.52765 * 109.00801 * 53.30926 * 26 14 13 28 28 H 0.97000 * 119.99569 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00611 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47103 * 59.99502 * 10 9 7 31 31 H 1.09006 * 109.46825 * 299.99988 * 10 9 7 32 32 H 1.08994 * 109.45338 * 304.96021 * 11 10 9 33 33 H 1.09001 * 109.50171 * 58.66112 * 12 11 10 34 34 H 1.09007 * 109.52652 * 298.58180 * 12 11 10 35 35 H 1.09002 * 109.58772 * 294.84407 * 13 12 11 36 36 H 1.09005 * 109.70464 * 174.49486 * 13 12 11 37 37 H 1.08005 * 125.63745 * 359.97233 * 18 17 15 38 38 H 1.07996 * 120.42196 * 359.94803 * 21 20 19 39 39 H 1.07999 * 120.32447 * 179.77560 * 22 21 20 40 40 H 1.07992 * 119.94599 * 180.22998 * 23 22 21 41 41 H 1.09000 * 109.58690 * 173.14145 * 26 14 13 42 42 H 1.08998 * 109.58906 * 293.56610 * 26 14 13 43 43 H 1.09004 * 109.56236 * 185.54868 * 27 26 14 44 44 H 1.09004 * 109.35904 * 65.49945 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8249 -6.1414 0.1246 13 6 0.8245 -7.3010 0.1584 14 7 -0.0412 -7.2135 -1.0255 15 6 -0.1820 -8.2682 -1.8527 16 8 0.3483 -9.3296 -1.5812 17 6 -0.9739 -8.1371 -3.0793 18 6 -2.2713 -7.6048 -3.1854 19 7 -2.6447 -7.6559 -4.4369 20 7 -1.6213 -8.2181 -5.2075 21 6 -1.5183 -8.4790 -6.5415 22 6 -0.3810 -9.0462 -7.0186 23 6 0.6627 -9.3402 -6.1334 24 7 0.5361 -9.0724 -4.8522 25 6 -0.5803 -8.5194 -4.3760 26 6 -0.7455 -5.9524 -1.2939 27 6 0.2682 -4.8096 -1.3085 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6847 -3.7146 0.8894 31 1 2.6847 -3.7146 -0.8906 32 1 0.3799 -4.7131 0.8408 33 1 2.4097 -6.1385 1.0444 34 1 2.4914 -6.2607 -0.7298 35 1 0.2171 -7.2334 1.0610 36 1 1.3612 -8.2498 0.1494 37 1 -2.8618 -7.2184 -2.3678 38 1 -2.3326 -8.2409 -7.2098 39 1 -0.2806 -9.2643 -8.0716 40 1 1.5732 -9.7880 -6.5032 41 1 -1.2426 -6.0104 -2.2622 42 1 -1.4835 -5.7725 -0.5122 43 1 -0.2551 -3.8587 -1.4086 44 1 0.9489 -4.9412 -2.1497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205839407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = 75.332177 kcal Electronic energy + Delta-G solvation = -27687.934142 eV Core-core repulsion = 23834.807337 eV Total energy + Delta-G solvation = -3853.126805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53890 -41.08172 -39.14615 -38.74482 -36.52073 -35.17865 -34.42702 -32.65065 -32.17151 -31.92009 -30.48820 -28.19935 -25.94118 -25.88158 -24.87283 -24.32148 -23.60731 -22.71897 -21.50466 -20.34519 -19.32604 -19.04744 -18.47574 -18.04429 -17.39060 -16.96837 -16.70452 -16.53098 -16.09020 -15.68897 -15.43838 -15.31640 -15.21867 -15.00219 -14.65481 -14.38623 -14.06502 -13.94970 -13.85181 -13.68871 -13.47957 -13.11895 -12.93041 -12.77756 -12.66576 -12.39137 -12.17035 -12.09085 -11.95703 -11.67911 -11.49867 -11.32184 -10.97325 -10.91894 -10.87054 -10.66372 -9.67515 -9.07955 -8.97537 -7.94527 -5.22346 -0.57114 -0.22835 0.90521 1.07501 1.47539 1.47797 1.58046 1.73479 2.11409 2.42159 2.56395 2.79862 2.98084 3.38844 3.52048 3.68064 3.76993 3.80161 3.88139 3.97016 4.03895 4.11362 4.23602 4.32881 4.37313 4.40739 4.48466 4.57087 4.60491 4.72464 4.82275 4.87673 4.97659 4.98648 5.02931 5.07768 5.09786 5.16241 5.29484 5.41179 5.48030 5.54282 5.61761 6.17639 6.28526 6.39136 6.56741 7.18227 7.35177 8.11084 8.36140 9.29006 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.002755 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.760162 B =10160.817139 C =10968.830363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.082 4.082 12 C -0.115 4.115 13 C 0.117 3.883 14 N -0.601 5.601 15 C 0.605 3.395 16 O -0.581 6.581 17 C -0.323 4.323 18 C 0.134 3.866 19 N -0.326 5.326 20 N -0.312 5.312 21 C 0.150 3.850 22 C -0.198 4.198 23 C 0.190 3.810 24 N -0.511 5.511 25 C 0.296 3.704 26 C 0.111 3.889 27 C -0.117 4.117 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.021 0.979 31 H 0.009 0.991 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.220 0.780 39 H 0.226 0.774 40 H 0.221 0.779 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -21.554 -15.264 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.101 4.101 12 C -0.154 4.154 13 C -0.005 4.005 14 N -0.332 5.332 15 C 0.394 3.606 16 O -0.462 6.462 17 C -0.340 4.340 18 C -0.047 4.047 19 N -0.148 5.148 20 N -0.081 5.081 21 C 0.016 3.984 22 C -0.221 4.221 23 C 0.011 3.989 24 N -0.224 5.224 25 C 0.063 3.937 26 C -0.011 4.011 27 C -0.155 4.155 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.039 0.961 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.236 0.764 39 H 0.242 0.758 40 H 0.237 0.763 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.187 -21.823 -15.116 26.875 hybrid contribution 0.191 1.252 0.154 1.276 sum -3.996 -20.571 -14.962 25.749 Atomic orbital electron populations 1.69807 1.06411 1.25967 1.59517 1.25520 0.96440 1.00882 1.03748 0.85107 0.78152 0.79973 0.76737 1.19355 1.21984 1.21888 1.19644 0.91389 0.85545 1.41136 0.91116 1.42554 1.05712 1.00949 1.89263 1.20803 0.93879 0.85057 0.97146 1.21185 0.97108 0.93801 0.98024 1.21818 0.97623 0.92876 1.03043 1.21642 0.92446 0.99184 0.87204 1.48018 1.46901 1.12419 1.25911 1.17070 0.78972 0.82860 0.81701 1.90736 1.51308 1.28809 1.75357 1.19294 0.99841 1.22870 0.91966 1.24480 0.92679 0.92324 0.95176 1.77516 1.08929 1.24704 1.03652 1.47215 1.12720 1.39755 1.08394 1.23146 1.01852 0.93097 0.80325 1.22555 0.91646 1.02411 1.05476 1.24467 1.00337 0.87966 0.86151 1.68272 1.20012 1.15518 1.18558 1.20427 0.85571 0.95854 0.91828 1.21901 0.94500 0.81522 1.03215 1.21704 0.98197 0.98326 0.97281 0.93969 0.79057 0.96108 0.97271 0.90508 0.88967 0.92736 0.89464 0.89913 0.75346 0.76361 0.75784 0.76297 0.89020 0.88792 0.91475 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.25 -13.87 9.99 84.04 0.84 -13.03 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -37.80 5.32 -343.44 -1.83 -39.63 16 10 C 0.16 6.42 5.65 86.38 0.49 6.91 16 11 C -0.08 -2.62 2.19 -10.77 -0.02 -2.64 16 12 C -0.11 -3.10 5.36 30.67 0.16 -2.94 16 13 C 0.12 3.04 6.42 86.36 0.55 3.60 16 14 N -0.60 -16.77 2.98 -824.54 -2.46 -19.23 16 15 C 0.60 19.59 7.55 86.42 0.65 20.24 16 16 O -0.58 -22.86 16.54 -4.41 -0.07 -22.93 16 17 C -0.32 -9.30 5.17 -19.89 -0.10 -9.41 16 18 C 0.13 3.07 9.58 85.45 0.82 3.89 16 19 N -0.33 -7.61 12.58 -56.58 -0.71 -8.32 16 20 N -0.31 -6.67 3.86 -191.79 -0.74 -7.41 16 21 C 0.15 1.53 11.29 83.42 0.94 2.48 16 22 C -0.20 -0.98 10.05 22.11 0.22 -0.76 16 23 C 0.19 2.22 11.28 85.16 0.96 3.18 16 24 N -0.51 -12.71 10.47 -191.87 -2.01 -14.72 16 25 C 0.30 8.06 7.90 133.98 1.06 9.12 16 26 C 0.11 2.79 5.84 86.22 0.50 3.29 16 27 C -0.12 -3.66 5.23 30.53 0.16 -3.50 16 28 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.38 19.99 6.84 -92.71 -0.63 19.36 16 30 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.01 0.39 8.14 -2.38 -0.02 0.38 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.32 7.03 -2.38 -0.02 2.30 16 37 H 0.23 3.60 7.59 -2.91 -0.02 3.58 16 38 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.23 -1.35 8.06 -2.91 -0.02 -1.37 16 40 H 0.22 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.09 2.17 4.55 -2.39 -0.01 2.16 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.40 7.15 -2.38 -0.02 2.38 16 44 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -85.96 363.29 2.60 -83.36 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.40 Total: 22.27 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 7.70 Total: 16.65 kcal Atomic # 7 Polarization: -140.29 SS G_CDS: -7.46 Total: -147.75 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.07 Total: -22.93 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -85.96 2.60 -83.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205839407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.695 kcal (2) G-P(sol) polarization free energy of solvation -85.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds