Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47462 * 2 1 4 4 H 1.09001 * 109.47205 * 305.00071 * 3 2 1 5 5 C 1.50694 * 109.47670 * 184.99952 * 3 2 1 6 6 N 1.34780 * 120.00208 * 87.29212 * 5 3 2 7 7 O 1.21284 * 120.00206 * 267.29727 * 5 3 2 8 8 N 1.46910 * 109.47114 * 64.99817 * 3 2 1 9 9 C 1.47898 * 110.99975 * 169.10871 * 8 3 2 10 10 C 1.53988 * 107.05876 * 214.15525 * 9 8 3 11 11 H 1.09003 * 110.31055 * 120.13908 * 10 9 8 12 12 C 1.52996 * 110.31236 * 242.31315 * 10 9 8 13 13 C 1.54595 * 105.13973 * 1.22916 * 10 9 8 14 14 H 1.09004 * 110.72488 * 263.42242 * 13 10 9 15 15 N 1.46497 * 110.72743 * 140.31410 * 13 10 9 16 16 C 1.34781 * 119.99720 * 154.99870 * 15 13 10 17 17 O 1.21275 * 120.00431 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99526 * 179.97438 * 16 15 13 19 19 S 1.81001 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00186 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00110 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99838 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 119.99915 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47292 * 89.99971 * 24 22 20 26 26 H 1.48504 * 109.47119 * 209.99793 * 24 22 20 27 27 H 1.48498 * 109.47424 * 329.99654 * 24 22 20 28 28 C 1.48532 * 110.99621 * 51.71033 * 8 3 2 29 29 H 1.08997 * 109.46778 * 59.99790 * 1 2 3 30 30 H 1.08996 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47080 * 300.00369 * 1 2 3 32 32 H 1.08999 * 109.47191 * 240.00175 * 2 1 3 33 33 H 1.09005 * 109.47387 * 120.00187 * 2 1 3 34 34 H 0.97002 * 119.99519 * 0.02562 * 6 5 3 35 35 H 0.97001 * 120.00428 * 179.72933 * 6 5 3 36 36 H 1.08999 * 109.91968 * 333.51217 * 9 8 3 37 37 H 1.09000 * 109.91708 * 94.60883 * 9 8 3 38 38 H 1.08994 * 109.47392 * 58.54258 * 12 10 9 39 39 H 1.09001 * 109.46991 * 178.54704 * 12 10 9 40 40 H 1.09008 * 109.46889 * 298.54154 * 12 10 9 41 41 H 0.96995 * 120.00040 * 334.99638 * 15 13 10 42 42 H 1.09000 * 109.47717 * 300.00291 * 18 16 15 43 43 H 1.09001 * 109.47530 * 60.00221 * 18 16 15 44 44 H 0.96997 * 120.00031 * 180.02562 * 23 22 20 45 45 H 1.08996 * 110.67077 * 278.15549 * 28 8 3 46 46 H 1.09001 * 110.66949 * 41.29197 * 28 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 7 4.1177 1.4239 -1.3422 7 8 4.2326 1.4641 0.8730 8 7 1.6514 2.0993 1.2553 9 6 2.3404 3.3989 1.4088 10 6 2.6115 3.5917 2.9124 11 1 3.6819 3.6874 3.0946 12 6 1.8707 4.8256 3.4317 13 6 2.0644 2.3135 3.5884 14 1 1.0559 2.4791 3.9676 15 7 2.9555 1.8745 4.6651 16 6 2.4702 1.1348 5.6820 17 8 1.2958 0.8331 5.7058 18 6 3.3870 0.6828 6.7893 19 16 2.4451 -0.2834 7.9957 20 6 3.7246 -0.6708 9.1435 21 1 4.7309 -0.3191 8.9695 22 6 3.4396 -1.4288 10.2709 23 7 2.2133 -1.8578 10.4827 24 14 4.7962 -1.8400 11.4873 25 1 4.8699 -0.7791 12.5239 26 1 4.5027 -3.1443 12.1338 27 1 6.0945 -1.9234 10.7713 28 6 2.0564 1.2850 2.4296 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.5653 1.4084 -2.1395 35 1 5.0844 1.4290 -1.4221 36 1 3.2822 3.3871 0.8602 37 1 1.7045 4.2025 1.0372 38 1 0.8018 4.7095 3.2534 39 1 2.0511 4.9342 4.5011 40 1 2.2319 5.7122 2.9104 41 1 3.8947 2.1161 4.6462 42 1 4.1840 0.0669 6.3726 43 1 3.8203 1.5539 7.2807 44 1 2.0140 -2.3872 11.2707 45 1 1.3287 0.4962 2.6203 46 1 3.0511 0.8645 2.2817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206096332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -72.465239 kcal Electronic energy + Delta-G solvation = -26633.861205 eV Core-core repulsion = 22877.476624 eV Total energy + Delta-G solvation = -3756.384581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14295 -39.27134 -37.85512 -35.49268 -34.10298 -33.32238 -32.38276 -31.65336 -29.88874 -28.20482 -26.99812 -25.47598 -25.09229 -22.71206 -21.99146 -20.49319 -20.12529 -20.03412 -17.90335 -17.70185 -17.43582 -16.50664 -16.30681 -15.60877 -15.37636 -14.86573 -14.76586 -14.66924 -14.35538 -14.17738 -13.71290 -13.61954 -13.50304 -13.25857 -12.95824 -12.63711 -12.44607 -12.26179 -12.10781 -11.99402 -11.64373 -11.41651 -11.25316 -11.07574 -11.02507 -10.97911 -10.94859 -10.76165 -10.70500 -10.45560 -10.04594 -9.76342 -9.29492 -9.02481 -8.73402 -8.49150 -8.17569 -6.44158 -6.17284 -3.87001 2.17777 3.08416 3.10493 3.18879 3.25489 3.30759 3.35091 3.62414 3.92928 4.24973 4.32800 4.46640 4.53459 4.66647 4.70842 4.79851 5.04241 5.17701 5.18766 5.22672 5.30509 5.36396 5.38928 5.42635 5.48819 5.71025 5.72220 5.76806 5.79828 5.86794 5.91051 5.96178 6.01308 6.09118 6.15464 6.21181 6.22831 6.36389 6.51475 6.64487 6.87740 6.90527 7.64127 7.83182 7.84838 8.39865 8.72939 9.28035 10.90172 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002585 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.017830 B =10830.343512 C =11054.965835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.058 3.942 4 H 0.104 0.896 5 C 0.490 3.510 6 N -0.856 5.856 7 O -0.532 6.532 8 N -0.484 5.484 9 C 0.037 3.963 10 C -0.103 4.103 11 H 0.080 0.920 12 C -0.141 4.141 13 C 0.153 3.847 14 H 0.102 0.898 15 N -0.728 5.728 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.007 3.993 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.398 0.602 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.084 0.916 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 10.692 -27.786 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.055 4.055 4 H 0.122 0.878 5 C 0.273 3.727 6 N -0.420 5.420 7 O -0.408 6.408 8 N -0.207 5.207 9 C -0.091 4.091 10 C -0.122 4.122 11 H 0.098 0.902 12 C -0.199 4.199 13 C 0.046 3.954 14 H 0.120 0.880 15 N -0.381 5.381 16 C 0.319 3.681 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.229 0.771 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.788 10.163 -26.879 28.747 hybrid contribution 3.872 0.090 0.124 3.875 sum 3.085 10.252 -26.756 28.818 Atomic orbital electron populations 1.21676 0.93735 1.01774 1.02953 1.21576 0.98003 0.92704 1.03033 1.22169 0.88870 0.98365 0.96099 0.87806 1.22059 0.92551 0.74682 0.83362 1.44125 1.11494 1.77828 1.08521 1.90737 1.65174 1.48829 1.36071 1.65154 1.51982 1.03046 1.00518 1.23025 0.97525 0.92269 0.96270 1.22151 1.00580 0.95321 0.94156 0.90204 1.21833 1.00566 0.96214 1.01286 1.21762 0.95310 0.91873 0.86432 0.88031 1.45984 1.12535 1.56013 1.23596 1.20296 0.88807 0.77050 0.81919 1.90692 1.17002 1.54398 1.77034 1.23536 1.02709 1.04617 0.99560 1.85364 1.13594 1.64508 1.19815 1.22881 0.96493 1.39277 1.09629 0.90981 1.24989 0.96286 0.95025 0.97316 1.70022 1.18590 1.34230 1.27502 0.86174 0.81062 0.77900 0.80394 1.20295 1.20778 1.19719 1.23974 1.02419 0.96862 0.88829 0.92825 0.92631 0.90953 0.91393 0.90646 0.77108 0.77103 0.93004 0.90197 0.91962 0.92219 0.92676 0.76808 0.89299 0.89310 0.92233 0.89724 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.80 37.16 0.36 -0.75 16 2 C -0.12 -0.91 5.05 -26.73 -0.13 -1.04 16 3 C 0.06 0.46 2.43 -68.86 -0.17 0.29 16 4 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 5 C 0.49 4.31 5.72 -10.99 -0.06 4.25 16 6 N -0.86 -4.15 8.87 31.22 0.28 -3.87 16 7 O -0.53 -6.84 13.33 5.55 0.07 -6.77 16 8 N -0.48 -4.95 4.84 -223.89 -1.08 -6.04 16 9 C 0.04 0.36 5.76 -2.76 -0.02 0.34 16 10 C -0.10 -1.10 3.32 -89.27 -0.30 -1.39 16 11 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 12 C -0.14 -1.36 8.89 37.16 0.33 -1.03 16 13 C 0.15 2.07 2.97 -66.07 -0.20 1.87 16 14 H 0.10 1.59 7.26 -51.93 -0.38 1.21 16 15 N -0.73 -10.89 5.18 -52.00 -0.27 -11.16 16 16 C 0.53 10.48 7.85 -10.98 -0.09 10.39 16 17 O -0.52 -12.08 15.51 5.56 0.09 -11.99 16 18 C -0.15 -3.25 6.16 36.01 0.22 -3.02 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 24 Si 0.92 21.82 29.55 -169.99 -5.02 16.79 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.01 0.10 4.41 -1.90 -0.01 0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.70 7.75 -51.93 -0.40 0.29 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.77 6.49 -51.93 -0.34 0.43 16 34 H 0.40 0.72 8.83 -40.82 -0.36 0.36 16 35 H 0.40 1.75 8.93 -40.82 -0.36 1.39 16 36 H 0.05 0.53 5.44 -51.93 -0.28 0.25 16 37 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.40 5.07 8.39 -40.82 -0.34 4.73 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 45 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 46 H 0.09 1.26 5.35 -51.93 -0.28 0.98 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -36.39 380.57 -8.82 -45.21 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.29 Total: 5.06 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 0.15 Total: -3.25 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.34 Total: -46.93 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.39 -8.82 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206096332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.255 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds