Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 109.46979 * 2 1 4 4 C 1.46894 * 109.47446 * 239.99524 * 2 1 3 5 5 C 1.46903 * 109.46733 * 119.99905 * 2 1 3 6 6 C 1.52998 * 109.47250 * 62.44710 * 5 2 1 7 7 H 1.08995 * 109.46787 * 52.08079 * 6 5 2 8 8 C 1.50703 * 109.47004 * 172.08065 * 6 5 2 9 9 H 1.08003 * 119.99636 * 244.96364 * 8 6 5 10 10 C 1.37874 * 120.00169 * 65.23692 * 8 6 5 11 11 N 1.31522 * 119.99906 * 6.99687 * 10 8 6 12 12 Si 1.86798 * 119.99992 * 186.99471 * 10 8 6 13 13 H 1.48496 * 109.47309 * 94.88595 * 12 10 8 14 14 H 1.48504 * 109.46866 * 214.88369 * 12 10 8 15 15 H 1.48500 * 109.47341 * 334.87857 * 12 10 8 16 16 O 1.42902 * 109.47252 * 292.08209 * 6 5 2 17 17 C 1.42901 * 114.00006 * 150.00266 * 16 6 5 18 18 C 1.50701 * 109.47042 * 180.02562 * 17 16 6 19 19 O 1.21244 * 119.99785 * 359.97438 * 18 17 16 20 20 O 1.33950 * 119.99906 * 179.97438 * 18 17 16 21 21 N 1.21803 * 116.99941 * 179.97438 * 20 18 17 22 22 C 1.33875 * 122.75901 * 269.70684 * 21 20 18 23 23 O 1.21270 * 125.40100 * 359.97438 * 22 21 20 24 24 C 1.51318 * 109.20413 * 179.84033 * 22 21 20 25 25 C 1.54230 * 103.55387 * 0.38970 * 24 22 21 26 26 C 1.33873 * 122.76077 * 89.99719 * 21 20 18 27 27 O 1.21266 * 125.40048 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47507 * 288.33834 * 1 2 3 29 29 H 1.09006 * 109.46637 * 48.34110 * 1 2 3 30 30 H 1.09002 * 109.47023 * 168.33537 * 1 2 3 31 31 H 1.08995 * 109.46611 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47107 * 299.99603 * 3 2 1 33 33 H 1.09002 * 109.47036 * 59.99675 * 3 2 1 34 34 H 1.08997 * 109.47641 * 300.00414 * 4 2 1 35 35 H 1.09000 * 109.46903 * 60.00235 * 4 2 1 36 36 H 1.09003 * 109.47404 * 179.97438 * 4 2 1 37 37 H 1.09008 * 109.47031 * 302.44824 * 5 2 1 38 38 H 1.09001 * 109.47084 * 182.45091 * 5 2 1 39 39 H 0.96998 * 119.99812 * 179.97438 * 11 10 8 40 40 H 1.09004 * 109.46692 * 299.99327 * 17 16 6 41 41 H 1.08991 * 109.47213 * 59.99658 * 17 16 6 42 42 H 1.09003 * 110.80073 * 241.77612 * 24 22 21 43 43 H 1.09002 * 110.41512 * 118.81267 * 24 22 21 44 44 H 1.09004 * 110.60495 * 241.25387 * 25 24 22 45 45 H 1.09000 * 110.60654 * 118.29710 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1993 5 6 1.9586 -0.6925 1.1995 6 6 1.4995 -2.1517 1.1691 7 1 1.7779 -2.6003 0.2156 8 6 2.1592 -2.9093 2.2925 9 1 2.8563 -3.7041 2.0714 10 6 1.8685 -2.5917 3.6022 11 7 0.9168 -1.7253 3.8732 12 14 2.8264 -3.3919 4.9920 13 1 3.9475 -2.5055 5.3951 14 1 1.9258 -3.6098 6.1525 15 1 3.3671 -4.6967 4.5334 16 8 0.0802 -2.2078 1.3256 17 6 -0.5328 -3.3222 0.6741 18 6 -2.0217 -3.2814 0.9034 19 8 -2.5096 -2.3867 1.5602 20 8 -2.8060 -4.2336 0.3814 21 7 -4.0010 -4.1476 0.6011 22 6 -4.5853 -4.7177 1.6622 23 8 -4.0165 -5.3711 2.5108 24 6 -6.0677 -4.4149 1.6366 25 6 -6.2420 -3.5704 0.3578 26 6 -4.8390 -3.4800 -0.2016 27 8 -4.5236 -2.8951 -1.2159 28 1 -0.3634 0.3233 0.9754 29 1 -0.3633 0.6831 -0.7678 30 1 -0.3633 -1.0065 -0.2078 31 1 3.0486 1.3850 0.0005 32 1 1.5954 1.8988 -0.8900 33 1 1.5952 1.8989 0.8900 34 1 1.5954 -1.7202 -1.1994 35 1 1.5954 -0.1788 -2.0893 36 1 3.0488 -0.6921 -1.1995 37 1 1.5598 -0.2046 2.0890 38 1 3.0477 -0.6546 1.2218 39 1 0.7121 -1.5021 4.7946 40 1 -0.3289 -3.2748 -0.3956 41 1 -0.1275 -4.2487 1.0806 42 1 -6.3612 -3.8431 2.5170 43 1 -6.6432 -5.3380 1.5680 44 1 -6.6223 -2.5785 0.6021 45 1 -6.9043 -4.0734 -0.3467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224529883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -0.309840 kcal Electronic energy + Delta-G solvation = -30579.530569 eV Core-core repulsion = 26299.459087 eV Total energy + Delta-G solvation = -4280.071482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.14439 -43.31548 -41.09169 -39.84582 -39.20260 -37.98008 -36.81710 -34.46786 -32.82800 -31.73475 -30.45363 -30.22336 -29.10733 -27.66383 -27.56046 -25.15150 -24.75995 -24.26675 -22.68037 -21.37656 -19.56146 -19.43300 -19.01271 -18.69316 -18.24932 -18.23323 -17.98033 -17.30287 -17.09746 -16.86372 -16.60691 -15.91199 -15.62767 -15.45368 -15.31800 -15.17305 -14.95898 -14.82592 -14.67492 -14.29688 -14.15497 -14.13192 -13.97146 -13.76457 -13.65258 -13.53543 -13.40220 -13.06959 -12.60573 -12.57915 -12.27024 -12.17515 -12.11772 -11.92945 -11.35724 -11.14942 -10.94930 -10.74519 -10.17984 -9.91744 -7.64334 -5.90357 0.25445 0.30096 0.43524 0.97996 1.33772 2.05657 2.14175 2.29057 2.31195 2.31941 2.33181 2.36535 2.85595 2.88601 3.05675 3.12247 3.14844 3.16709 3.27757 3.40051 3.51673 3.65415 3.66027 3.67352 3.70522 3.74914 3.83382 3.97144 3.98968 4.13055 4.26663 4.28417 4.30354 4.38702 4.42038 4.50192 4.59264 5.08841 5.17280 5.18339 5.97673 6.14371 6.19348 6.30125 6.48727 7.25189 7.37979 7.93956 9.35728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.273 5.273 3 C -0.041 4.041 4 C -0.046 4.046 5 C 0.002 3.998 6 C 0.199 3.801 7 H 0.037 0.963 8 C -0.579 4.579 9 H 0.076 0.924 10 C 0.091 3.909 11 N -0.838 5.838 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.267 1.267 16 O -0.348 6.348 17 C 0.084 3.916 18 C 0.418 3.582 19 O -0.454 6.454 20 O -0.069 6.069 21 N -0.405 5.405 22 C 0.508 3.492 23 O -0.447 6.447 24 C -0.146 4.146 25 C -0.146 4.146 26 C 0.514 3.486 27 O -0.462 6.462 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.275 0.725 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 8.634 -13.862 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 N 0.068 4.932 3 C -0.183 4.183 4 C -0.187 4.187 5 C -0.116 4.116 6 C 0.144 3.856 7 H 0.055 0.945 8 C -0.615 4.615 9 H 0.095 0.905 10 C -0.122 4.122 11 N -0.470 5.470 12 Si 0.722 3.278 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.191 1.191 16 O -0.268 6.268 17 C 0.005 3.995 18 C 0.257 3.743 19 O -0.333 6.333 20 O -0.089 6.089 21 N -0.181 5.181 22 C 0.299 3.701 23 O -0.314 6.314 24 C -0.186 4.186 25 C -0.186 4.186 26 C 0.305 3.695 27 O -0.330 6.330 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.677 9.159 -13.442 16.351 hybrid contribution 0.779 -0.500 0.913 1.300 sum -0.898 8.659 -12.529 15.256 Atomic orbital electron populations 1.24205 0.76119 1.08719 1.08312 1.46437 1.15704 1.14484 1.16585 1.24007 1.04871 0.81223 1.08149 1.24058 1.05051 1.02408 0.87232 1.24864 1.02977 0.97680 0.86082 1.20060 0.79407 0.88809 0.97354 0.94488 1.21216 1.29265 1.21058 0.90000 0.90542 1.25070 0.93425 0.94180 0.99484 1.69906 1.25097 1.30637 1.21359 0.86460 0.79912 0.80341 0.81111 1.19843 1.20343 1.19107 1.88204 1.22144 1.41763 1.74715 1.21414 0.84337 0.96101 0.97683 1.25574 0.91392 0.80216 0.77079 1.90843 1.75251 1.33690 1.33559 1.85412 1.04860 1.49374 1.69221 1.43718 0.96939 1.50197 1.27228 1.21710 0.91432 0.77871 0.79135 1.90886 1.70523 1.34358 1.35595 1.22450 0.91229 1.04190 1.00732 1.22445 0.93185 1.05012 0.97961 1.21663 0.89025 0.76058 0.82776 1.90809 1.81362 1.38978 1.21883 0.85819 0.88403 0.86004 0.86807 0.87230 0.86579 0.86385 0.87182 0.86548 0.83836 0.85896 0.91475 0.90351 0.87708 0.84961 0.84974 0.85048 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.24 7.03 60.06 0.42 0.66 16 2 N -0.27 2.56 0.05 -395.62 -0.02 2.54 16 3 C -0.04 0.49 7.99 60.07 0.48 0.97 16 4 C -0.05 0.52 7.59 60.06 0.46 0.97 16 5 C 0.00 -0.01 3.55 -3.82 -0.01 -0.02 16 6 C 0.20 0.16 1.87 -27.88 -0.05 0.11 16 7 H 0.04 -0.09 5.47 -51.93 -0.28 -0.37 16 8 C -0.58 -4.00 8.85 -34.44 -0.30 -4.31 16 9 H 0.08 0.60 7.82 -52.48 -0.41 0.19 16 10 C 0.09 0.86 5.23 -17.82 -0.09 0.77 16 11 N -0.84 -8.67 11.28 55.43 0.62 -8.04 16 12 Si 0.90 8.59 29.54 -169.99 -5.02 3.57 16 13 H -0.27 -2.62 7.11 56.52 0.40 -2.22 16 14 H -0.28 -3.15 7.11 56.52 0.40 -2.75 16 15 H -0.27 -2.72 7.11 56.52 0.40 -2.32 16 16 O -0.35 -0.96 5.63 -55.15 -0.31 -1.27 16 17 C 0.08 0.14 5.61 36.01 0.20 0.34 16 18 C 0.42 1.85 7.93 36.01 0.29 2.13 16 19 O -0.45 -3.31 16.56 -25.82 -0.43 -3.74 16 20 O -0.07 -0.27 9.81 -16.60 -0.16 -0.43 16 21 N -0.40 -1.12 2.04 -11.38 -0.02 -1.15 16 22 C 0.51 1.23 8.06 -11.08 -0.09 1.14 16 23 O -0.45 -3.04 17.90 -11.45 -0.21 -3.24 16 24 C -0.15 0.52 7.03 -26.94 -0.19 0.33 16 25 C -0.15 0.62 7.03 -26.94 -0.19 0.43 16 26 C 0.51 0.51 8.05 -11.09 -0.09 0.42 16 27 O -0.46 -1.72 17.90 -11.45 -0.20 -1.93 16 28 H 0.12 -0.58 7.92 -51.93 -0.41 -0.99 16 29 H 0.10 -1.00 7.96 -51.93 -0.41 -1.42 16 30 H 0.12 -0.65 5.11 -51.93 -0.27 -0.91 16 31 H 0.11 -1.46 8.13 -51.93 -0.42 -1.88 16 32 H 0.11 -1.51 8.05 -51.93 -0.42 -1.92 16 33 H 0.12 -1.29 8.14 -51.93 -0.42 -1.71 16 34 H 0.12 -1.19 5.85 -51.93 -0.30 -1.50 16 35 H 0.11 -1.47 8.14 -51.93 -0.42 -1.90 16 36 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 37 H 0.14 -0.06 6.84 -51.92 -0.36 -0.42 16 38 H 0.12 -0.61 8.11 -51.93 -0.42 -1.04 16 39 H 0.28 3.08 8.31 -40.82 -0.34 2.74 16 40 H 0.08 -0.24 7.98 -51.93 -0.41 -0.65 16 41 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.13 -0.64 8.14 -51.93 -0.42 -1.06 16 43 H 0.13 -0.79 8.14 -51.93 -0.42 -1.21 16 44 H 0.13 -0.76 8.14 -51.93 -0.42 -1.18 16 45 H 0.13 -0.88 8.14 -51.93 -0.42 -1.30 16 LS Contribution 370.55 15.07 5.58 5.58 Total: 0.00 -24.01 370.55 -5.98 -29.98 By element: Atomic # 1 Polarization: -19.19 SS G_CDS: -6.64 Total: -25.83 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 0.82 Total: 3.94 kcal Atomic # 7 Polarization: -7.23 SS G_CDS: 0.58 Total: -6.65 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.31 Total: -10.60 kcal Atomic # 14 Polarization: 8.59 SS G_CDS: -5.02 Total: 3.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -24.01 -5.98 -29.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224529883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.675 kcal (2) G-P(sol) polarization free energy of solvation -24.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds