Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 H 1.09004 * 109.46967 * 56.57448 * 3 2 1 5 5 C 1.50703 * 109.47101 * 176.56666 * 3 2 1 6 6 N 1.34780 * 119.99938 * 271.07569 * 5 3 2 7 7 O 1.21273 * 119.99795 * 91.07291 * 5 3 2 8 8 N 1.46897 * 109.47537 * 296.57079 * 3 2 1 9 9 C 1.47959 * 110.99917 * 76.17694 * 8 3 2 10 10 C 1.53939 * 86.17775 * 137.58342 * 9 8 3 11 11 C 1.47961 * 110.99910 * 175.54231 * 8 3 2 12 12 H 1.09006 * 113.85945 * 336.73861 * 11 8 3 13 13 C 1.52996 * 113.76472 * 108.10055 * 11 8 3 14 14 N 1.46494 * 109.47316 * 160.96148 * 13 11 8 15 15 C 1.46506 * 119.99822 * 264.57923 * 14 13 11 16 16 C 1.34774 * 120.00406 * 84.58112 * 14 13 11 17 17 O 1.21280 * 119.99823 * 4.27889 * 16 14 13 18 18 C 1.50696 * 120.00252 * 184.27714 * 16 14 13 19 19 S 1.80995 * 109.47270 * 175.48304 * 18 16 14 20 20 C 1.76198 * 100.00367 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99471 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00134 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00018 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99729 * 180.27928 * 22 20 19 25 25 H 1.48500 * 109.47081 * 179.72963 * 24 22 20 26 26 H 1.48504 * 109.47127 * 299.72722 * 24 22 20 27 27 H 1.48507 * 109.47487 * 59.72679 * 24 22 20 28 28 H 1.09005 * 109.46722 * 193.27132 * 1 2 3 29 29 H 1.08996 * 109.47508 * 313.26748 * 1 2 3 30 30 H 1.08996 * 109.47177 * 73.27852 * 1 2 3 31 31 H 1.08999 * 109.47227 * 240.00661 * 2 1 3 32 32 H 1.09002 * 109.47107 * 120.00503 * 2 1 3 33 33 H 0.96998 * 120.00511 * 359.97438 * 6 5 3 34 34 H 0.96995 * 119.99936 * 180.02562 * 6 5 3 35 35 H 1.08993 * 113.76112 * 23.26768 * 9 8 3 36 36 H 1.08996 * 113.85629 * 251.90931 * 9 8 3 37 37 H 1.09003 * 113.73369 * 221.91722 * 10 9 8 38 38 H 1.08996 * 113.73293 * 90.63639 * 10 9 8 39 39 H 1.08998 * 109.46827 * 40.95389 * 13 11 8 40 40 H 1.09007 * 109.46897 * 280.96114 * 13 11 8 41 41 H 1.08996 * 109.47184 * 266.14652 * 15 14 13 42 42 H 1.09000 * 109.47049 * 26.15095 * 15 14 13 43 43 H 1.09000 * 109.47135 * 146.14997 * 15 14 13 44 44 H 1.09002 * 109.47202 * 55.47733 * 18 16 14 45 45 H 1.09001 * 109.47410 * 295.48149 * 18 16 14 46 46 H 0.97006 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6273 1.9737 0.8577 5 6 3.5446 1.4434 0.0851 6 7 4.1515 1.4452 1.2885 7 8 4.2092 1.4425 -0.9293 8 7 1.6191 2.1107 -1.2386 9 6 0.1860 2.4748 -1.1842 10 6 0.6079 3.8130 -1.8174 11 6 2.0031 3.5396 -1.2271 12 1 2.1448 3.9500 -0.2272 13 6 3.1522 3.8770 -2.1791 14 7 3.1607 5.3179 -2.4430 15 6 2.4933 5.8484 -3.6345 16 6 3.7824 6.1557 -1.5898 17 8 4.4006 5.7110 -0.6459 18 6 3.7095 7.6449 -1.8086 19 16 4.5230 8.4972 -0.4346 20 6 4.2964 10.1711 -0.9356 21 1 3.7786 10.3936 -1.8569 22 6 4.7825 11.2038 -0.1458 23 7 5.4132 10.9326 0.9772 24 14 4.5355 12.9787 -0.6731 25 1 5.1374 13.8840 0.3385 26 1 5.1902 13.2003 -1.9875 27 1 3.0825 13.2629 -0.7897 28 1 -0.3633 -1.0003 0.2359 29 1 -0.3634 0.7043 0.7483 30 1 -0.3633 0.2957 -0.9842 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6199 1.4463 2.0999 34 1 5.1199 1.4462 1.3433 35 1 -0.2041 2.5721 -0.1711 36 1 -0.4484 1.8652 -1.8275 37 1 0.1100 4.6801 -1.3834 38 1 0.5843 3.8094 -2.9071 39 1 3.0181 3.3367 -3.1162 40 1 4.0987 3.5854 -1.7239 41 1 3.2163 5.9412 -4.4449 42 1 1.6948 5.1704 -3.9358 43 1 2.0723 6.8282 -3.4093 44 1 2.6655 7.9538 -1.8608 45 1 4.2110 7.9000 -2.7422 46 1 5.7533 11.6543 1.5290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230818982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = -33.696439 kcal Electronic energy + Delta-G solvation = -26780.921902 eV Core-core repulsion = 23026.218462 eV Total energy + Delta-G solvation = -3754.703440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07663 -39.28433 -38.57114 -35.39974 -34.43779 -33.51453 -32.41857 -30.35397 -29.71494 -28.02624 -26.33216 -25.70430 -25.44225 -23.26439 -22.51781 -20.39826 -19.93620 -18.96539 -17.78223 -17.60834 -17.16270 -16.40697 -16.15196 -16.01721 -15.56776 -15.06030 -14.79678 -14.64355 -14.39149 -14.04410 -13.86100 -13.46420 -13.22830 -13.15459 -12.83108 -12.75383 -12.51343 -12.39938 -12.22127 -12.10297 -11.94892 -11.84526 -11.59519 -11.10617 -11.03204 -11.02902 -10.76197 -10.65136 -10.52629 -9.87203 -9.79539 -9.72533 -9.27758 -9.08403 -9.04765 -8.37370 -8.20398 -6.48275 -6.20362 -3.90578 2.52702 2.92737 3.14794 3.22162 3.23955 3.27774 3.30247 3.56137 3.89910 4.21952 4.35413 4.45940 4.52115 4.62007 4.74912 4.92757 4.97026 5.04096 5.14069 5.14501 5.17995 5.21601 5.26602 5.34279 5.38851 5.53163 5.55680 5.60458 5.67669 5.75484 5.77661 5.79277 5.87731 5.95467 5.99090 6.01550 6.18047 6.27052 6.61583 6.72308 6.87430 7.22670 7.60208 7.66134 8.19137 8.36259 8.65526 9.24767 10.87036 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.002741 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.490505 B =10214.610220 C =10729.888054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.033 3.967 4 H 0.066 0.934 5 C 0.521 3.479 6 N -0.855 5.855 7 O -0.518 6.518 8 N -0.447 5.447 9 C 0.004 3.996 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.080 0.920 13 C 0.142 3.858 14 N -0.621 5.621 15 C 0.080 3.920 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.149 4.149 19 S -0.063 6.063 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.283 1.283 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 -21.003 -3.372 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.080 4.080 4 H 0.083 0.917 5 C 0.304 3.696 6 N -0.419 5.419 7 O -0.391 6.391 8 N -0.172 5.172 9 C -0.124 4.124 10 C -0.180 4.180 11 C -0.090 4.090 12 H 0.098 0.902 13 C 0.018 3.982 14 N -0.357 5.357 15 C -0.063 4.063 16 C 0.319 3.681 17 O -0.391 6.391 18 C -0.300 4.300 19 S 0.163 5.837 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.208 1.208 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.226 0.774 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.372 -22.042 -3.052 24.990 hybrid contribution -0.923 2.159 -0.187 2.355 sum -12.295 -19.883 -3.239 23.601 Atomic orbital electron populations 1.22019 0.94959 1.01798 1.02692 1.21401 0.96662 0.93285 1.03092 1.22307 0.92717 0.98413 0.94519 0.91668 1.20331 0.90089 0.75617 0.83586 1.43872 1.11547 1.78345 1.08179 1.90737 1.66262 1.47408 1.34723 1.68492 1.05672 1.11978 1.31038 1.24062 0.91272 0.96322 1.00758 1.23420 0.95569 0.97307 1.01669 1.23868 0.96324 0.88546 1.00235 0.90205 1.21092 0.98628 0.79533 0.98910 1.47820 1.56047 1.06789 1.25056 1.21810 0.97140 1.00072 0.87298 1.20333 0.77787 0.88283 0.81678 1.90681 1.40470 1.77973 1.29944 1.23553 1.05308 0.94075 1.07051 1.85356 1.73122 1.00806 1.24385 1.22822 1.43253 0.91260 1.10909 0.91022 1.24984 0.94546 0.99481 0.94561 1.70007 1.35217 1.33090 1.12052 0.86234 0.78587 0.82313 0.78422 1.20830 1.19927 1.19953 0.92488 0.92740 0.91322 0.90233 0.91384 0.77360 0.76505 0.91047 0.88780 0.90763 0.89004 0.89932 0.89197 0.92762 0.91248 0.90934 0.89436 0.89263 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.51 37.16 0.32 -0.64 16 2 C -0.11 -0.82 5.60 -26.73 -0.15 -0.97 16 3 C 0.03 0.32 1.73 -68.87 -0.12 0.20 16 4 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 5 C 0.52 6.40 6.59 -10.98 -0.07 6.33 16 6 N -0.86 -7.84 8.87 31.22 0.28 -7.56 16 7 O -0.52 -8.50 15.22 5.56 0.08 -8.41 16 8 N -0.45 -4.84 5.47 -224.14 -1.23 -6.06 16 9 C 0.00 0.04 5.60 -2.76 -0.02 0.02 16 10 C -0.14 -1.37 7.26 -25.79 -0.19 -1.56 16 11 C 0.02 0.26 2.86 -66.65 -0.19 0.07 16 12 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 13 C 0.14 2.10 4.80 -4.05 -0.02 2.08 16 14 N -0.62 -9.50 2.76 -181.58 -0.50 -10.00 16 15 C 0.08 0.90 9.96 59.85 0.60 1.50 16 16 C 0.53 10.59 7.64 -10.99 -0.08 10.50 16 17 O -0.52 -12.24 15.51 5.56 0.09 -12.16 16 18 C -0.15 -3.12 4.78 36.00 0.17 -2.95 16 19 S -0.06 -1.75 20.58 -107.50 -2.21 -3.96 16 20 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 7.26 -51.93 -0.38 -0.07 16 30 H 0.07 0.43 5.64 -51.93 -0.29 0.14 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.42 8.83 -40.82 -0.36 2.06 16 34 H 0.40 3.63 8.93 -40.82 -0.36 3.27 16 35 H 0.07 0.52 6.73 -51.93 -0.35 0.17 16 36 H 0.09 0.64 6.83 -51.93 -0.35 0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.81 6.84 -51.93 -0.36 0.46 16 39 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 40 H 0.09 1.66 6.02 -51.93 -0.31 1.35 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 43 H 0.07 0.80 6.46 -51.93 -0.34 0.47 16 44 H 0.09 1.67 7.31 -51.92 -0.38 1.29 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -36.95 378.77 -8.76 -45.70 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.13 Total: 4.28 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 0.44 Total: 1.58 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.72 Total: -49.20 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.95 -8.76 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.008 kcal (2) G-P(sol) polarization free energy of solvation -36.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds