Wall clock time and date at job start Tue Mar 31 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00277 * 2 1 4 4 H 1.48498 * 109.47172 * 240.00165 * 3 2 1 5 5 H 1.48504 * 109.47161 * 120.00191 * 3 2 1 6 6 H 1.48502 * 109.47152 * 359.97438 * 3 2 1 7 7 C 1.37886 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.53943 * 113.74288 * 276.67185 * 9 7 2 11 11 N 1.47575 * 86.11875 * 222.04813 * 10 9 7 12 12 C 1.34783 * 134.49341 * 204.63538 * 11 10 9 13 13 O 1.21286 * 119.99890 * 175.12737 * 12 11 10 14 14 C 1.50692 * 119.99836 * 355.13286 * 12 11 10 15 15 C 1.53063 * 119.24731 * 199.97347 * 14 12 11 16 16 C 1.52931 * 60.43812 * 248.82202 * 15 14 12 17 17 H 1.08996 * 119.50741 * 111.74280 * 16 15 14 18 18 C 1.54575 * 118.19845 * 268.38279 * 16 15 14 19 19 C 1.54947 * 102.85944 * 85.42635 * 18 16 15 20 20 N 1.47525 * 117.37491 * 353.91180 * 14 12 11 21 21 C 1.34780 * 127.04136 * 295.06357 * 20 14 12 22 22 O 1.21629 * 120.00061 * 183.32893 * 21 20 14 23 23 C 1.47264 * 120.00179 * 3.32764 * 21 20 14 24 24 C 1.46682 * 126.94022 * 352.41601 * 23 21 20 25 25 C 1.34489 * 106.33342 * 179.88756 * 24 23 21 26 26 N 1.36447 * 108.85557 * 0.37638 * 25 24 23 27 27 H 0.96994 * 124.85092 * 179.77030 * 26 25 24 28 28 C 1.34664 * 110.29616 * 359.74768 * 26 25 24 29 29 C 1.47579 * 91.01527 * 24.64171 * 11 10 9 30 30 H 0.96997 * 119.99965 * 180.02562 * 1 2 3 31 31 H 1.09001 * 112.95013 * 48.40882 * 9 7 2 32 32 H 1.08997 * 113.77236 * 336.35277 * 10 9 7 33 33 H 1.09004 * 113.76689 * 107.75075 * 10 9 7 34 34 H 1.09006 * 117.45530 * 356.44115 * 15 14 12 35 35 H 1.09005 * 117.45867 * 141.20865 * 15 14 12 36 36 H 1.09006 * 110.73437 * 203.76367 * 18 16 15 37 37 H 1.08997 * 110.73706 * 326.90541 * 18 16 15 38 38 H 1.09004 * 110.66340 * 81.00800 * 19 18 16 39 39 H 1.08995 * 110.66244 * 204.12604 * 19 18 16 40 40 H 1.08002 * 126.83669 * 0.02562 * 24 23 21 41 41 H 1.08001 * 125.57065 * 180.08814 * 25 24 23 42 42 H 1.07995 * 125.80118 * 179.97438 * 28 26 25 43 43 H 1.09004 * 113.77061 * 221.05857 * 29 11 10 44 44 H 1.09002 * 113.77133 * 89.65808 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1030 1.6963 1.2125 6 1 1.2842 2.7464 -0.0006 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.7998 -2.9544 1.3991 11 7 1.2210 -4.3068 0.9852 12 6 0.8827 -5.5570 1.3582 13 8 1.3431 -6.5114 0.7680 14 6 -0.0674 -5.7690 2.5084 15 6 -0.0933 -7.1256 3.2168 16 6 -1.2925 -6.6924 2.3724 17 1 -1.5137 -7.2189 1.4440 18 6 -2.4440 -5.9357 3.0731 19 6 -1.9606 -4.4640 3.0389 20 7 -0.4845 -4.5777 3.2721 21 6 0.2991 -3.7807 4.0253 22 8 -0.1923 -2.8617 4.6524 23 6 1.7504 -4.0226 4.0889 24 6 2.4792 -5.1650 3.5273 25 6 3.7765 -4.9676 3.8216 26 7 3.8974 -3.8037 4.5234 27 1 4.7335 -3.4410 4.8555 28 6 2.6902 -3.2303 4.6886 29 6 2.1614 -3.7406 -0.0012 30 1 -0.4850 -0.8400 0.0004 31 1 0.4612 -2.5339 -0.7509 32 1 1.3965 -2.5374 2.2104 33 1 -0.2732 -2.8606 1.5670 34 1 0.5446 -7.9138 2.8167 35 1 -0.2149 -7.1248 4.3000 36 1 -3.3748 -6.0491 2.5173 37 1 -2.5645 -6.2814 4.0997 38 1 -2.1635 -4.0149 2.0666 39 1 -2.4293 -3.8866 3.8357 40 1 2.0581 -5.9977 2.9835 41 1 4.5892 -5.6255 3.5512 42 1 2.4970 -2.3029 5.2070 43 1 2.1757 -4.2744 -0.9514 44 1 3.1582 -3.5545 0.3986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269707979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:19 Heat of formation + Delta-G solvation = 68.890095 kcal Electronic energy + Delta-G solvation = -30250.571780 eV Core-core repulsion = 26364.872875 eV Total energy + Delta-G solvation = -3885.698905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35351 -40.34094 -38.73986 -37.95931 -36.71351 -32.93260 -32.48298 -31.66079 -29.98497 -29.08697 -28.77892 -25.32376 -25.08075 -24.32791 -23.11221 -22.04837 -21.06513 -20.46635 -20.07833 -19.44600 -18.61377 -17.55049 -16.91404 -16.41301 -16.10853 -15.49453 -15.18292 -14.87563 -14.50400 -14.19922 -13.96281 -13.80203 -13.67871 -13.55380 -13.39116 -13.03092 -12.64626 -12.58097 -12.42969 -11.96401 -11.93179 -11.77903 -11.53264 -11.40212 -11.09138 -10.96210 -10.64940 -10.63934 -10.42876 -10.15550 -9.68195 -9.57524 -9.46320 -8.70932 -8.65611 -8.49598 -8.37771 -8.13974 -7.84998 -6.45631 -4.18163 1.99025 2.56602 2.69140 2.94795 3.36212 3.40154 3.40655 3.44598 3.59898 3.76575 3.79949 4.39116 4.46551 4.54367 4.74179 4.94623 5.07014 5.07955 5.21253 5.24130 5.25276 5.30597 5.57760 5.60494 5.66718 5.69665 5.79301 5.89441 5.95786 6.02499 6.05406 6.08686 6.15807 6.22142 6.28898 6.36106 6.55881 6.56803 6.68243 6.87506 7.06267 7.34181 7.55233 7.73701 8.04554 8.31204 8.40050 8.50034 8.65305 8.76958 9.54312 10.93606 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.005490 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.938768 B = 5099.188620 C = 5593.149000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 1.068 2.932 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.594 4.594 8 H 0.054 0.946 9 C 0.012 3.988 10 C 0.106 3.894 11 N -0.619 5.619 12 C 0.569 3.431 13 O -0.566 6.566 14 C 0.050 3.950 15 C -0.122 4.122 16 C -0.131 4.131 17 H 0.128 0.872 18 C -0.106 4.106 19 C 0.109 3.891 20 N -0.588 5.588 21 C 0.622 3.378 22 O -0.546 6.546 23 C -0.226 4.226 24 C -0.164 4.164 25 C -0.022 4.022 26 N -0.551 5.551 27 H 0.416 0.584 28 C 0.079 3.921 29 C 0.116 3.884 30 H 0.269 0.731 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.060 0.940 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -11.848 9.237 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.632 4.632 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.017 4.017 11 N -0.350 5.350 12 C 0.357 3.643 13 O -0.448 6.448 14 C -0.041 4.041 15 C -0.160 4.160 16 C -0.150 4.150 17 H 0.146 0.854 18 C -0.144 4.144 19 C -0.012 4.012 20 N -0.323 5.323 21 C 0.415 3.585 22 O -0.425 6.425 23 C -0.237 4.237 24 C -0.188 4.188 25 C -0.149 4.149 26 N -0.146 5.146 27 H 0.252 0.748 28 C -0.058 4.058 29 C -0.005 4.005 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.193 0.807 43 H 0.079 0.921 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.596 -10.227 9.401 13.983 hybrid contribution 0.679 -1.548 0.081 1.693 sum 2.274 -11.776 9.482 15.289 Atomic orbital electron populations 1.70800 1.06854 1.30725 1.45062 1.25836 0.96472 1.02635 0.93096 0.83556 0.74974 0.75388 0.76521 1.21363 1.21433 1.20667 1.21742 0.94045 0.90674 1.56749 0.92811 1.20659 0.94800 0.93105 0.92130 1.23919 0.98834 0.77188 1.01716 1.50138 1.41211 1.04450 1.39163 1.18721 0.81104 0.82269 0.82172 1.90666 1.57440 1.40479 1.56204 1.21646 1.02322 0.84222 0.95877 1.23493 0.98834 0.94365 0.99350 1.23764 0.88682 1.00055 1.02524 0.85373 1.22418 0.97080 0.93662 1.01223 1.22948 0.79127 0.96602 1.02559 1.48345 1.08677 1.27036 1.48229 1.16949 0.84923 0.79924 0.76704 1.90784 1.75490 1.31084 1.45148 1.20121 0.92228 0.99972 1.11332 1.22456 0.92654 0.99795 1.03908 1.21697 0.98565 0.91161 1.03483 1.41561 1.08746 1.19668 1.44583 0.74793 1.21746 0.83624 0.98898 1.01561 1.23316 0.94158 0.92761 0.90280 0.91986 0.93073 0.90140 0.92625 0.86457 0.87841 0.89141 0.90233 0.90370 0.89083 0.83368 0.81821 0.80703 0.92104 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.65 55.43 0.76 -25.42 16 2 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 3 Si 1.07 24.31 29.90 -169.99 -5.08 19.22 16 4 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.59 -15.78 8.77 -34.44 -0.30 -16.09 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.01 0.30 3.09 -90.85 -0.28 0.02 16 10 C 0.11 2.38 5.18 -2.98 -0.02 2.37 16 11 N -0.62 -12.78 2.90 -178.44 -0.52 -13.30 16 12 C 0.57 10.95 4.87 -10.99 -0.05 10.90 16 13 O -0.57 -11.91 17.17 5.55 0.10 -11.81 16 14 C 0.05 0.79 1.26 -131.85 -0.17 0.62 16 15 C -0.12 -1.52 8.82 -26.73 -0.24 -1.76 16 16 C -0.13 -1.62 6.92 -89.30 -0.62 -2.24 16 17 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.11 -1.13 6.86 -24.88 -0.17 -1.30 16 19 C 0.11 1.55 6.85 -1.14 -0.01 1.55 16 20 N -0.59 -9.88 1.81 -156.14 -0.28 -10.16 16 21 C 0.62 11.85 5.45 -12.59 -0.07 11.78 16 22 O -0.55 -11.84 17.22 5.25 0.09 -11.75 16 23 C -0.23 -3.92 4.21 -103.35 -0.44 -4.36 16 24 C -0.16 -2.64 8.29 -37.50 -0.31 -2.95 16 25 C -0.02 -0.29 11.89 -16.82 -0.20 -0.49 16 26 N -0.55 -6.52 5.90 -12.85 -0.08 -6.60 16 27 H 0.42 3.32 8.96 -40.82 -0.37 2.95 16 28 C 0.08 1.17 11.70 -16.84 -0.20 0.97 16 29 C 0.12 2.50 8.39 -2.98 -0.02 2.48 16 30 H 0.27 7.81 7.04 -40.82 -0.29 7.53 16 31 H 0.05 1.32 7.61 -51.93 -0.40 0.93 16 32 H 0.08 1.94 6.09 -51.93 -0.32 1.62 16 33 H 0.06 1.29 6.65 -51.93 -0.35 0.95 16 34 H 0.12 1.43 7.93 -51.93 -0.41 1.02 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 39 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 40 H 0.15 2.51 3.61 -52.49 -0.19 2.32 16 41 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.18 2.38 8.06 -52.49 -0.42 1.95 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.56 8.09 -51.93 -0.42 1.14 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -33.87 354.18 -8.57 -42.45 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.71 Total: 9.93 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.18 Total: 2.11 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.12 Total: -55.48 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.19 Total: -23.56 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.87 -8.57 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269707979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.336 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds