Wall clock time and date at job start Tue Mar 31 2020 04:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00580 * 2 1 4 4 H 1.48490 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46818 * 299.99944 * 3 2 1 6 6 H 1.48503 * 109.46980 * 59.99735 * 3 2 1 7 7 C 1.37880 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00432 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99823 * 0.27992 * 7 2 1 10 10 C 1.53950 * 113.73937 * 278.46002 * 9 7 2 11 11 N 1.47813 * 86.03586 * 222.08750 * 10 9 7 12 12 C 1.34781 * 134.45029 * 204.65050 * 11 10 9 13 13 O 1.21282 * 119.99434 * 174.80579 * 12 11 10 14 14 C 1.50699 * 120.00418 * 354.80243 * 12 11 10 15 15 C 1.52861 * 118.99825 * 80.24792 * 14 12 11 16 16 C 1.53119 * 60.43735 * 110.84738 * 15 14 12 17 17 H 1.09003 * 119.80887 * 247.84577 * 16 15 14 18 18 C 1.54701 * 117.55785 * 91.98677 * 16 15 14 19 19 C 1.54956 * 102.70062 * 319.12799 * 18 16 15 20 20 N 1.47385 * 117.17963 * 285.44733 * 14 12 11 21 21 C 1.34781 * 126.94565 * 15.71123 * 20 14 12 22 22 O 1.21625 * 119.99824 * 0.11867 * 21 20 14 23 23 C 1.47257 * 119.99898 * 180.12512 * 21 20 14 24 24 C 1.46693 * 126.94203 * 168.62761 * 23 21 20 25 25 C 1.34488 * 106.33247 * 179.97438 * 24 23 21 26 26 N 1.36445 * 108.85588 * 0.02562 * 25 24 23 27 27 H 0.96998 * 124.84970 * 180.02562 * 26 25 24 28 28 C 1.34656 * 110.30015 * 359.72678 * 26 25 24 29 29 C 1.47572 * 91.05178 * 24.54940 * 11 10 9 30 30 H 0.97006 * 119.99455 * 359.97438 * 1 2 3 31 31 H 1.08999 * 112.94767 * 50.05284 * 9 7 2 32 32 H 1.08994 * 113.77320 * 336.35329 * 10 9 7 33 33 H 1.09001 * 113.76298 * 107.75084 * 10 9 7 34 34 H 1.09009 * 117.45790 * 218.45775 * 15 14 12 35 35 H 1.08997 * 117.45814 * 3.26200 * 15 14 12 36 36 H 1.09004 * 110.76506 * 77.42364 * 18 16 15 37 37 H 1.09000 * 110.77157 * 200.63745 * 18 16 15 38 38 H 1.08994 * 110.66632 * 80.88570 * 19 18 16 39 39 H 1.09000 * 110.66129 * 203.83416 * 19 18 16 40 40 H 1.08001 * 126.82845 * 359.96669 * 24 23 21 41 41 H 1.08000 * 125.56993 * 180.02562 * 25 24 23 42 42 H 1.07997 * 125.80491 * 180.29995 * 28 26 25 43 43 H 1.08996 * 113.77192 * 221.14930 * 29 11 10 44 44 H 1.09003 * 113.87138 * 89.76608 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0053 10 6 0.7556 -2.9350 1.3857 11 7 1.1915 -4.2942 1.0019 12 6 0.8419 -5.5396 1.3806 13 8 1.3166 -6.5012 0.8141 14 6 -0.1387 -5.7373 2.5077 15 6 -1.6337 -5.5929 2.2232 16 6 -1.0563 -6.9734 2.5480 17 1 -1.0279 -7.7439 1.7775 18 6 -1.0626 -7.4215 4.0287 19 6 -0.6583 -6.1268 4.7781 20 7 0.3514 -5.4958 3.8765 21 6 1.4762 -4.8432 4.2309 22 8 2.2053 -4.3793 3.3751 23 6 1.8222 -4.6920 5.6543 24 6 3.0988 -4.2259 6.2065 25 6 2.9626 -4.2478 7.5443 26 7 1.7089 -4.6892 7.8528 27 1 1.3642 -4.7940 8.7534 28 6 1.0165 -4.9525 6.7283 29 6 2.1606 -3.7404 0.0367 30 1 -0.4850 0.8401 0.0004 31 1 0.4835 -2.5434 -0.7781 32 1 1.3265 -2.5067 2.2095 33 1 -0.3221 -2.8390 1.5181 34 1 -2.2464 -5.1123 2.9860 35 1 -1.9331 -5.4038 1.1924 36 1 -2.0583 -7.7472 4.3297 37 1 -0.3318 -8.2126 4.1962 38 1 -1.5177 -5.4673 4.8978 39 1 -0.2196 -6.3645 5.7473 40 1 3.9738 -3.9251 5.6495 41 1 3.7215 -3.9625 8.2578 42 1 -0.0014 -5.3106 6.6823 43 1 2.2028 -4.2862 -0.9058 44 1 3.1460 -3.5487 0.4616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269707983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:23 Heat of formation + Delta-G solvation = 79.741456 kcal Electronic energy + Delta-G solvation = -28969.671535 eV Core-core repulsion = 25084.443180 eV Total energy + Delta-G solvation = -3885.228355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36295 -40.50905 -38.49752 -37.74634 -36.44333 -33.10051 -32.49982 -30.93148 -30.54134 -29.23310 -28.71806 -25.29593 -24.84748 -24.69777 -23.75144 -21.79770 -20.99201 -20.49907 -20.01850 -19.32189 -18.19229 -17.44472 -16.73857 -16.44561 -15.93068 -15.44209 -15.19409 -14.86074 -14.56222 -14.50279 -14.13959 -14.05697 -13.77864 -13.44515 -13.08219 -13.01619 -12.69629 -12.48239 -12.40083 -12.14631 -11.93432 -11.78296 -11.26880 -11.12831 -11.03428 -10.80327 -10.72580 -10.57534 -10.34609 -10.22184 -9.60122 -9.43704 -9.07840 -8.91330 -8.76485 -8.51908 -8.44410 -8.28180 -7.49056 -6.04189 -4.07089 1.71374 2.38199 2.64443 3.08093 3.31849 3.34282 3.39761 3.45165 3.62806 3.79731 3.87377 4.38219 4.45086 4.49360 4.59943 4.85271 4.87850 4.93225 5.04071 5.07688 5.17903 5.27960 5.35609 5.44455 5.60745 5.66249 5.77349 5.78373 5.93225 5.96711 6.15724 6.30249 6.33662 6.46938 6.58826 6.62143 6.65484 6.77598 6.88885 6.98567 7.08029 7.25033 7.68545 7.74272 7.95099 8.35907 8.52868 8.77748 8.95311 9.01793 9.57969 11.06011 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.004575 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.972778 B = 6119.257570 C = 7730.645692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.122 3.878 11 N -0.605 5.605 12 C 0.575 3.425 13 O -0.568 6.568 14 C 0.076 3.924 15 C -0.143 4.143 16 C -0.151 4.151 17 H 0.127 0.873 18 C -0.102 4.102 19 C 0.083 3.917 20 N -0.584 5.584 21 C 0.596 3.404 22 O -0.502 6.502 23 C -0.211 4.211 24 C -0.138 4.138 25 C -0.024 4.024 26 N -0.553 5.553 27 H 0.415 0.585 28 C 0.024 3.976 29 C 0.110 3.890 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.181 0.819 43 H 0.056 0.944 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -11.814 18.415 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.011 3.989 10 C 0.000 4.000 11 N -0.336 5.336 12 C 0.361 3.639 13 O -0.448 6.448 14 C -0.014 4.014 15 C -0.182 4.182 16 C -0.171 4.171 17 H 0.145 0.855 18 C -0.140 4.140 19 C -0.039 4.039 20 N -0.320 5.320 21 C 0.387 3.613 22 O -0.375 6.375 23 C -0.222 4.222 24 C -0.162 4.162 25 C -0.151 4.151 26 N -0.148 5.148 27 H 0.251 0.749 28 C -0.111 4.111 29 C -0.012 4.012 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.198 0.802 43 H 0.075 0.925 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.952 -12.028 17.879 21.908 hybrid contribution 0.125 0.954 0.696 1.188 sum -3.826 -11.074 18.576 21.962 Atomic orbital electron populations 1.69972 1.05993 1.26643 1.50157 1.24998 0.94839 0.99200 0.94604 0.86515 0.80330 0.83567 0.77500 1.19582 1.21009 1.21048 1.21024 0.93081 0.89726 1.50911 0.91919 1.20528 0.94124 0.91471 0.92818 1.23580 0.98234 0.76629 1.01557 1.50115 1.38795 1.04464 1.40187 1.18363 0.81255 0.82389 0.81855 1.90612 1.57102 1.40237 1.56872 1.21258 0.91211 1.04344 0.84560 1.23429 0.93459 0.97423 1.03882 1.23675 1.03221 0.91858 0.98345 0.85488 1.22263 1.02281 0.96908 0.92559 1.23203 0.91810 0.94293 0.94633 1.48238 1.22736 1.56405 1.04577 1.17165 0.79243 0.77213 0.87712 1.90934 1.48889 1.46689 1.51035 1.20375 0.96834 1.13663 0.91315 1.22005 0.97532 1.04052 0.92591 1.21800 0.88217 1.08210 0.96891 1.41615 1.12335 1.52420 1.08462 0.74859 1.22569 0.98538 1.04581 0.85377 1.23414 0.94172 0.93368 0.90254 0.92969 0.92155 0.90493 0.92851 0.87932 0.86849 0.89506 0.89865 0.90427 0.88674 0.83322 0.81302 0.80205 0.92522 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.03 8.77 -34.44 -0.30 -14.33 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.03 0.77 3.60 -90.84 -0.33 0.44 16 10 C 0.12 2.98 7.40 -2.84 -0.02 2.96 16 11 N -0.61 -14.33 2.48 -178.22 -0.44 -14.77 16 12 C 0.57 13.06 6.26 -10.98 -0.07 12.99 16 13 O -0.57 -14.38 17.67 5.56 0.10 -14.28 16 14 C 0.08 1.33 2.97 -132.04 -0.39 0.94 16 15 C -0.14 -1.99 9.62 -26.74 -0.26 -2.25 16 16 C -0.15 -2.00 6.92 -89.14 -0.62 -2.62 16 17 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 18 C -0.10 -0.96 7.03 -24.80 -0.17 -1.14 16 19 C 0.08 0.81 5.46 -1.43 -0.01 0.80 16 20 N -0.58 -9.23 3.34 -156.79 -0.52 -9.75 16 21 C 0.60 10.93 7.84 -12.59 -0.10 10.84 16 22 O -0.50 -11.51 12.92 5.26 0.07 -11.44 16 23 C -0.21 -3.05 6.22 -103.35 -0.64 -3.70 16 24 C -0.14 -1.84 10.99 -37.49 -0.41 -2.26 16 25 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 26 N -0.55 -4.12 5.90 -12.85 -0.08 -4.20 16 27 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 28 C 0.02 0.24 10.30 -16.84 -0.17 0.06 16 29 C 0.11 2.64 8.39 -2.97 -0.02 2.62 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 32 H 0.08 2.01 7.11 -51.93 -0.37 1.64 16 33 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.19 7.14 -51.92 -0.37 0.82 16 35 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.64 7.28 -51.93 -0.38 0.26 16 39 H 0.10 0.70 4.68 -51.93 -0.24 0.46 16 40 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.18 1.18 4.94 -52.49 -0.26 0.92 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -37.23 363.03 -9.26 -46.49 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.76 Total: 4.19 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -3.82 Total: 6.66 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.31 Total: -53.33 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.17 Total: -25.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.23 -9.26 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269707983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.233 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds