Wall clock time and date at job start Tue Mar 31 2020 04:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99985 * 2 1 4 4 H 1.48506 * 109.47065 * 269.99671 * 3 2 1 5 5 H 1.48498 * 109.47203 * 29.99652 * 3 2 1 6 6 H 1.48507 * 109.47096 * 149.99832 * 3 2 1 7 7 C 1.37884 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.53498 * 114.20466 * 179.97438 * 9 7 2 11 11 N 1.47072 * 87.98332 * 220.15031 * 10 9 7 12 12 C 1.34777 * 136.05312 * 207.08724 * 11 10 9 13 13 O 1.21290 * 120.00284 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99928 * 179.97438 * 12 11 10 15 15 H 1.08999 * 115.56211 * 325.75212 * 14 12 11 16 16 C 1.53154 * 117.55527 * 111.56537 * 14 12 11 17 17 C 1.52326 * 117.51785 * 180.02562 * 14 12 11 18 18 C 1.53294 * 128.82215 * 134.62395 * 17 14 12 19 19 N 1.47724 * 85.85728 * 196.98219 * 18 17 14 20 20 C 1.34776 * 134.39414 * 204.12454 * 19 18 17 21 21 O 1.21633 * 119.99851 * 179.97438 * 20 19 18 22 22 C 1.47261 * 119.99956 * 359.95268 * 20 19 18 23 23 C 1.46683 * 126.94156 * 180.02562 * 22 20 19 24 24 C 1.34483 * 106.33208 * 179.97438 * 23 22 20 25 25 N 1.36450 * 108.85916 * 359.97438 * 24 23 22 26 26 H 0.96993 * 124.85247 * 179.97438 * 25 24 23 27 27 C 1.34658 * 110.29237 * 359.75038 * 25 24 23 28 28 C 1.47728 * 91.21133 * 24.09334 * 19 18 17 29 29 C 1.47057 * 87.88573 * 27.34020 * 11 10 9 30 30 H 0.96997 * 120.00025 * 0.02562 * 1 2 3 31 31 H 1.08993 * 113.28351 * 313.06224 * 9 7 2 32 32 H 1.08996 * 113.46713 * 105.36879 * 10 9 7 33 33 H 1.08999 * 113.46707 * 334.92432 * 10 9 7 34 34 H 1.08998 * 117.51473 * 359.97438 * 16 14 12 35 35 H 1.08995 * 117.51563 * 214.85885 * 16 14 12 36 36 H 1.08999 * 113.80368 * 311.21695 * 18 17 14 37 37 H 1.08990 * 113.81280 * 82.74662 * 18 17 14 38 38 H 1.08000 * 126.83202 * 359.95664 * 23 22 20 39 39 H 1.08003 * 125.57320 * 179.97438 * 24 23 22 40 40 H 1.08007 * 125.79916 * 180.29776 * 27 25 24 41 41 H 1.09004 * 113.81105 * 221.66991 * 28 19 18 42 42 H 1.09003 * 113.92270 * 90.15781 * 28 19 18 43 43 H 1.09008 * 113.46809 * 87.44200 * 29 11 10 44 44 H 1.09000 * 113.46642 * 217.87461 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2073 -4.3593 -0.9472 12 6 0.8319 -5.6139 -1.2659 13 8 1.3287 -6.5599 -0.6919 14 6 -0.2052 -5.8414 -2.3353 15 1 -0.9897 -5.0872 -2.3977 16 6 0.2562 -6.4923 -3.6426 17 6 -0.5877 -7.2820 -2.6496 18 6 -1.9836 -7.8856 -2.8416 19 7 -1.3286 -9.1940 -2.6385 20 6 -1.6197 -10.4600 -2.9976 21 8 -0.8744 -11.3681 -2.6824 22 6 -2.8402 -10.7438 -3.7711 23 6 -3.3024 -12.0550 -4.2389 24 6 -4.4544 -11.8369 -4.8977 25 7 -4.7326 -10.5013 -4.8695 26 1 -5.5105 -10.0885 -5.2759 27 6 -3.7753 -9.8391 -4.1924 28 6 -0.2269 -8.5607 -1.8852 29 6 0.8605 -3.0034 -1.3985 30 1 -0.4850 0.8400 -0.0004 31 1 0.4433 -2.5303 0.7317 32 1 2.1877 -4.2513 0.9646 33 1 3.1372 -3.5666 -0.4232 34 1 1.3103 -6.7556 -3.7294 35 1 -0.2249 -6.1661 -4.5647 36 1 -2.6898 -7.6200 -2.0549 37 1 -2.3888 -7.7473 -3.8439 38 1 -2.8146 -13.0062 -4.0851 39 1 -5.0604 -12.5949 -5.3716 40 1 -3.7492 -8.7741 -4.0145 41 1 0.7586 -8.9568 -2.1304 42 1 -0.4049 -8.4968 -0.8117 43 1 1.5093 -2.6304 -2.1911 44 1 -0.1982 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269708231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:11 Heat of formation + Delta-G solvation = 89.366908 kcal Electronic energy + Delta-G solvation = -26768.042442 eV Core-core repulsion = 22883.231478 eV Total energy + Delta-G solvation = -3884.810964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44700 -40.51920 -39.27698 -37.99911 -36.86155 -34.43672 -32.72907 -31.36269 -29.95175 -29.34122 -27.61770 -26.35009 -25.60208 -25.00935 -23.25153 -22.61805 -20.91274 -20.42101 -19.55184 -19.21068 -18.14838 -17.97895 -16.96155 -16.58471 -16.44696 -15.91679 -15.43599 -14.95770 -14.87213 -14.60597 -14.48727 -14.31584 -13.91816 -13.54187 -13.45973 -13.14663 -13.03351 -12.85465 -12.47408 -12.33282 -12.22583 -11.95037 -11.56575 -11.36598 -11.01519 -10.89546 -10.84321 -10.72530 -10.39826 -10.31253 -9.75287 -9.63677 -9.25857 -9.14914 -9.02479 -8.77486 -8.62893 -8.61966 -7.90901 -6.23011 -4.28361 1.52791 2.17385 2.62376 2.88601 2.96187 3.20505 3.28343 3.30297 3.35012 3.49967 3.80021 4.15307 4.29998 4.36704 4.53878 4.59721 4.75595 4.81785 5.02686 5.05103 5.09602 5.17561 5.24006 5.34241 5.50124 5.53664 5.61321 5.73790 5.79621 5.85893 5.88170 6.02074 6.03021 6.13960 6.22543 6.40766 6.44250 6.52633 6.58467 6.61038 6.76578 7.07599 7.51091 7.69549 7.75069 8.13488 8.26094 8.47261 8.71679 8.75957 9.38652 10.86731 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.002064 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.949655 B =13564.660640 C =14253.753026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.100 3.900 11 N -0.638 5.638 12 C 0.559 3.441 13 O -0.561 6.561 14 C -0.152 4.152 15 H 0.127 0.873 16 C -0.113 4.113 17 C -0.151 4.151 18 C 0.139 3.861 19 N -0.643 5.643 20 C 0.611 3.389 21 O -0.546 6.546 22 C -0.222 4.222 23 C -0.143 4.143 24 C -0.023 4.023 25 N -0.553 5.553 26 H 0.417 0.583 27 C 0.040 3.960 28 C 0.168 3.832 29 C 0.099 3.901 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -14.613 -12.138 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.022 4.022 11 N -0.371 5.371 12 C 0.348 3.652 13 O -0.441 6.441 14 C -0.174 4.174 15 H 0.145 0.855 16 C -0.150 4.150 17 C -0.152 4.152 18 C 0.016 3.984 19 N -0.378 5.378 20 C 0.403 3.597 21 O -0.424 6.424 22 C -0.232 4.232 23 C -0.167 4.167 24 C -0.151 4.151 25 N -0.147 5.147 26 H 0.253 0.747 27 C -0.096 4.096 28 C 0.047 3.953 29 C -0.023 4.023 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.192 0.808 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.395 -15.886 -11.831 22.851 hybrid contribution -0.100 1.340 -0.326 1.383 sum -11.495 -14.545 -12.157 22.170 Atomic orbital electron populations 1.69946 1.06070 1.27149 1.49139 1.25030 0.94878 0.99422 0.94215 0.86532 0.79942 0.82947 0.78253 1.20510 1.21135 1.19668 1.20912 0.93041 0.89547 1.51998 0.91819 1.20395 0.94765 0.91142 0.92179 1.23356 0.94283 0.93076 0.91458 1.49933 1.42289 1.04791 1.40085 1.19005 0.82328 0.81302 0.82578 1.90647 1.57975 1.40928 1.54543 1.22117 1.01485 0.95995 0.97757 0.85489 1.22807 1.00482 0.99452 0.92247 1.22525 0.96997 0.91863 1.03849 1.22795 0.94098 0.79881 1.01654 1.49759 1.27234 1.04953 1.55903 1.16989 0.84169 0.80073 0.78449 1.90775 1.51067 1.43523 1.57077 1.20446 0.98101 0.94454 1.10223 1.21977 0.96108 0.96952 1.01650 1.21818 1.00496 0.84944 1.07828 1.41639 1.21590 1.07582 1.43915 0.74662 1.22310 0.90421 0.98186 0.98655 1.22461 0.91266 0.85359 0.96225 1.23663 0.99744 0.76817 1.02107 0.92631 0.91329 0.92408 0.90863 0.87755 0.87331 0.88749 0.89780 0.83447 0.81257 0.80824 0.89741 0.88649 0.90753 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.26 55.43 0.74 -22.64 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.56 29.54 -169.99 -5.02 14.53 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.52 -12.75 8.83 -34.44 -0.30 -13.05 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.03 0.77 3.79 -91.12 -0.35 0.43 16 10 C 0.10 2.02 8.17 -8.51 -0.07 1.96 16 11 N -0.64 -12.32 3.69 -185.06 -0.68 -13.00 16 12 C 0.56 10.17 7.86 -10.99 -0.09 10.08 16 13 O -0.56 -11.65 15.91 5.55 0.09 -11.56 16 14 C -0.15 -2.04 6.02 -92.04 -0.55 -2.60 16 15 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 16 C -0.11 -1.27 10.24 -26.97 -0.28 -1.54 16 17 C -0.15 -1.80 3.04 -154.99 -0.47 -2.27 16 18 C 0.14 1.28 7.15 -3.22 -0.02 1.26 16 19 N -0.64 -8.36 3.61 -183.05 -0.66 -9.02 16 20 C 0.61 9.15 8.04 -12.59 -0.10 9.05 16 21 O -0.55 -10.37 17.70 5.25 0.09 -10.28 16 22 C -0.22 -2.61 6.29 -103.35 -0.65 -3.26 16 23 C -0.14 -1.48 10.97 -37.50 -0.41 -1.90 16 24 C -0.02 -0.16 11.89 -16.82 -0.20 -0.36 16 25 N -0.55 -3.14 5.90 -12.84 -0.08 -3.21 16 26 H 0.42 0.86 8.96 -40.82 -0.37 0.50 16 27 C 0.04 0.32 11.01 -16.84 -0.19 0.13 16 28 C 0.17 2.40 7.27 -3.22 -0.02 2.38 16 29 C 0.10 1.96 8.00 -8.38 -0.07 1.89 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.55 6.34 -51.93 -0.33 0.22 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.17 0.61 8.06 -52.48 -0.42 0.18 16 40 H 0.17 0.93 5.12 -52.48 -0.27 0.66 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 1.44 8.01 -51.93 -0.42 1.02 16 43 H 0.07 1.45 8.10 -51.92 -0.42 1.03 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -33.39 376.91 -9.70 -43.09 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.99 Total: 2.59 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.86 Total: 3.82 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.68 Total: -47.87 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.39 -9.70 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269708231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.458 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds