Wall clock time and date at job start Tue Mar 31 2020 04:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.09004 * 115.55807 * 34.41932 * 14 12 11 16 16 C 1.53148 * 117.51820 * 248.66574 * 14 12 11 17 17 C 1.52321 * 117.51937 * 180.16666 * 14 12 11 18 18 C 1.53290 * 128.81799 * 349.54945 * 17 14 12 19 19 N 1.47724 * 85.85493 * 196.98471 * 18 17 14 20 20 C 1.34776 * 134.39072 * 204.09306 * 19 18 17 21 21 O 1.21625 * 120.00050 * 179.97438 * 20 19 18 22 22 C 1.47259 * 120.00240 * 0.02562 * 20 19 18 23 23 C 1.46690 * 126.94373 * 359.67467 * 22 20 19 24 24 C 1.34486 * 106.33381 * 179.89282 * 23 22 20 25 25 N 1.36443 * 108.85459 * 0.38196 * 24 23 22 26 26 H 0.97003 * 124.84874 * 179.72572 * 25 24 23 27 27 C 1.34657 * 110.30087 * 359.74768 * 25 24 23 28 28 C 1.47726 * 91.21411 * 24.09227 * 19 18 17 29 29 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 30 30 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 31 31 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 32 32 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 33 33 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 34 34 H 1.09002 * 117.51906 * 0.02562 * 16 14 12 35 35 H 1.08997 * 117.51551 * 145.07784 * 16 14 12 36 36 H 1.09007 * 113.80982 * 311.21434 * 18 17 14 37 37 H 1.09000 * 113.81522 * 82.74599 * 18 17 14 38 38 H 1.07998 * 126.83113 * 0.02749 * 23 22 20 39 39 H 1.08000 * 125.57201 * 180.16628 * 24 23 22 40 40 H 1.08004 * 125.80097 * 180.02562 * 27 25 24 41 41 H 1.08998 * 113.80822 * 221.67780 * 28 19 18 42 42 H 1.08990 * 113.80781 * 90.14146 * 28 19 18 43 43 H 1.08998 * 113.77108 * 221.06070 * 29 11 10 44 44 H 1.08991 * 113.87349 * 89.66683 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9614 -5.0373 2.4603 16 6 0.3246 -6.3401 3.7738 17 6 -0.4891 -7.2036 2.8163 18 6 -0.0835 -8.5041 2.1134 19 7 -1.1672 -9.1372 2.8925 20 6 -1.4186 -10.3941 3.3092 21 8 -2.4208 -10.6313 3.9561 22 6 -0.4792 -11.4800 2.9822 23 6 0.7641 -11.3680 2.2119 24 6 1.2934 -12.6035 2.1663 25 7 0.4710 -13.4605 2.8379 26 1 0.6299 -14.4114 2.9452 27 6 -0.5929 -12.7978 3.3300 28 6 -1.8654 -7.8429 3.0325 29 6 2.1616 -3.7405 0.0012 30 1 -0.4850 -0.8401 -0.0004 31 1 0.4618 -2.5341 -0.7504 32 1 1.3949 -2.5362 2.2115 33 1 -0.2743 -2.8598 1.5671 34 1 1.3866 -6.5634 3.8760 35 1 -0.1705 -5.9863 4.6781 36 1 -0.2610 -8.4969 1.0379 37 1 0.9133 -8.8558 2.3796 38 1 1.1741 -10.4714 1.7711 39 1 2.2165 -12.8739 1.6753 40 1 -1.3988 -13.2329 3.9025 41 1 -2.2791 -7.6713 4.0262 42 1 -2.5765 -7.6378 2.2323 43 1 2.1766 -4.2747 -0.9488 44 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269708232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:15 Heat of formation + Delta-G solvation = 80.616183 kcal Electronic energy + Delta-G solvation = -26958.812119 eV Core-core repulsion = 23073.621695 eV Total energy + Delta-G solvation = -3885.190424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38516 -40.52775 -39.30273 -38.02317 -36.89161 -34.44663 -32.89870 -31.44421 -29.46350 -29.20537 -27.76327 -26.42074 -25.49317 -25.00937 -23.20139 -22.50043 -20.96792 -20.58948 -19.39869 -19.13542 -18.26103 -18.11855 -17.21634 -16.62805 -16.30369 -15.90921 -15.57178 -15.02551 -14.90842 -14.56747 -14.40605 -14.01921 -13.83437 -13.60445 -13.40911 -13.29384 -13.14380 -12.99270 -12.47512 -12.31219 -12.12150 -11.92669 -11.70449 -11.53145 -11.01771 -10.88831 -10.74451 -10.65419 -10.33588 -10.19752 -9.77001 -9.69065 -9.44884 -9.12807 -8.79287 -8.65704 -8.56539 -8.53468 -8.00512 -6.54035 -4.27671 1.58676 2.19613 2.61398 2.84017 3.05440 3.29020 3.36846 3.38043 3.48787 3.56562 3.79644 4.13136 4.40457 4.43016 4.61432 4.72985 4.74827 4.88026 5.04982 5.15349 5.16381 5.24350 5.36236 5.43047 5.48618 5.57250 5.58208 5.61779 5.73842 5.81695 5.87733 5.91595 6.00265 6.01888 6.12052 6.21678 6.38475 6.41562 6.45564 6.59333 6.65592 7.13218 7.25213 7.70140 7.95243 8.23414 8.24358 8.33808 8.59594 8.69045 9.45162 10.85330 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.002145 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.196488 B =13051.577378 C =13697.606252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.097 3.903 11 N -0.634 5.634 12 C 0.554 3.446 13 O -0.562 6.562 14 C -0.155 4.155 15 H 0.126 0.874 16 C -0.112 4.112 17 C -0.152 4.152 18 C 0.160 3.840 19 N -0.638 5.638 20 C 0.615 3.385 21 O -0.560 6.560 22 C -0.229 4.229 23 C -0.169 4.169 24 C -0.020 4.020 25 N -0.554 5.554 26 H 0.417 0.583 27 C 0.073 3.927 28 C 0.151 3.849 29 C 0.113 3.887 30 H 0.270 0.730 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -21.246 6.737 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.896 3.104 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.026 4.026 11 N -0.367 5.367 12 C 0.344 3.656 13 O -0.442 6.442 14 C -0.177 4.177 15 H 0.144 0.856 16 C -0.149 4.149 17 C -0.153 4.153 18 C 0.039 3.961 19 N -0.373 5.373 20 C 0.408 3.592 21 O -0.440 6.440 22 C -0.239 4.239 23 C -0.193 4.193 24 C -0.148 4.148 25 N -0.149 5.149 26 H 0.254 0.746 27 C -0.064 4.064 28 C 0.029 3.971 29 C -0.009 4.009 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.194 0.806 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.280 -20.740 6.911 21.863 hybrid contribution 0.307 -1.964 0.030 1.988 sum 0.587 -22.704 6.940 23.748 Atomic orbital electron populations 1.70823 1.06880 1.30767 1.45220 1.25884 0.96454 1.02782 0.92990 0.83533 0.74948 0.75173 0.76708 1.21295 1.21283 1.20731 1.21807 0.94285 0.90667 1.56686 0.92550 1.20649 0.94920 0.93117 0.91960 1.23871 0.99105 0.77421 1.02185 1.50332 1.41901 1.04560 1.39886 1.19186 0.82370 0.81866 0.82217 1.90611 1.56527 1.40326 1.56761 1.22127 1.01493 0.96889 0.97206 0.85625 1.22812 1.00489 0.99351 0.92273 1.22579 0.97827 0.91026 1.03883 1.22662 0.91610 0.85695 0.96175 1.49636 1.26670 1.06246 1.54717 1.16945 0.84129 0.79928 0.78211 1.90757 1.29022 1.82458 1.41810 1.20280 0.99535 0.93231 1.10889 1.22431 0.95763 0.97631 1.03504 1.21841 0.98722 0.90184 1.04017 1.41646 1.18989 1.10969 1.43307 0.74626 1.21794 0.92253 0.91848 1.00498 1.22584 0.93179 0.78852 1.02487 1.23348 0.94267 0.92750 0.90513 0.91934 0.92771 0.90206 0.92146 0.87803 0.87279 0.88615 0.89407 0.83133 0.81307 0.80622 0.89683 0.89093 0.91979 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.65 55.43 0.76 -24.08 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.07 23.07 29.90 -169.99 -5.08 17.99 16 4 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.60 -14.97 8.77 -34.44 -0.30 -15.27 16 8 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.01 0.29 3.09 -90.84 -0.28 0.01 16 10 C 0.10 1.91 8.12 -2.97 -0.02 1.88 16 11 N -0.63 -12.07 3.61 -178.42 -0.64 -12.71 16 12 C 0.55 9.87 7.84 -10.98 -0.09 9.78 16 13 O -0.56 -11.06 15.86 5.56 0.09 -10.97 16 14 C -0.16 -2.15 5.94 -92.04 -0.55 -2.69 16 15 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 16 C -0.11 -1.31 10.24 -26.93 -0.28 -1.59 16 17 C -0.15 -1.89 3.04 -154.95 -0.47 -2.36 16 18 C 0.16 2.06 5.63 -3.22 -0.02 2.04 16 19 N -0.64 -8.59 3.61 -183.08 -0.66 -9.26 16 20 C 0.62 9.15 8.04 -12.59 -0.10 9.05 16 21 O -0.56 -9.86 17.64 5.26 0.09 -9.77 16 22 C -0.23 -2.83 6.28 -103.35 -0.65 -3.48 16 23 C -0.17 -1.80 10.04 -37.50 -0.38 -2.18 16 24 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 25 N -0.55 -3.65 5.90 -12.85 -0.08 -3.73 16 26 H 0.42 1.18 8.96 -40.82 -0.37 0.82 16 27 C 0.07 0.68 11.69 -16.84 -0.20 0.49 16 28 C 0.15 1.80 8.85 -3.22 -0.03 1.77 16 29 C 0.11 2.26 8.39 -2.97 -0.02 2.24 16 30 H 0.27 7.30 7.04 -40.82 -0.29 7.02 16 31 H 0.05 1.30 7.61 -51.93 -0.40 0.91 16 32 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.29 8.01 -51.92 -0.42 0.87 16 37 H 0.09 1.10 6.28 -51.93 -0.33 0.77 16 38 H 0.15 1.59 5.43 -52.49 -0.29 1.30 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -32.88 375.24 -9.48 -42.36 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.93 Total: 4.64 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -3.68 Total: -0.13 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.62 Total: -49.78 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.18 Total: -20.74 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.08 Total: 17.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.88 -9.48 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269708232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.976 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds