Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47130 * 270.00043 * 3 2 1 5 5 H 1.48497 * 109.47194 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.46932 * 150.00270 * 3 2 1 7 7 C 1.37881 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00167 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.48220 * 111.00012 * 190.00053 * 10 9 7 12 12 C 1.52679 * 85.71142 * 223.27427 * 11 10 9 13 13 C 1.48227 * 110.99887 * 90.27931 * 10 9 7 14 14 C 1.52236 * 122.19715 * 150.22901 * 12 11 10 15 15 N 1.47316 * 87.61223 * 150.21539 * 14 12 11 16 16 C 1.34773 * 135.87748 * 153.97318 * 15 14 12 17 17 O 1.21719 * 119.99867 * 4.30425 * 16 15 14 18 18 C 1.46670 * 120.00200 * 184.29533 * 16 15 14 19 19 C 1.36228 * 126.53534 * 354.27011 * 18 16 15 20 20 N 1.36421 * 110.05005 * 179.97438 * 19 18 16 21 21 N 1.39825 * 110.02557 * 0.02562 * 20 19 18 22 22 C 1.40739 * 133.19352 * 180.02562 * 21 20 19 23 23 C 1.32193 * 120.04956 * 179.97438 * 22 21 20 24 24 N 1.40761 * 120.44674 * 359.97438 * 23 22 21 25 25 C 1.40945 * 120.03590 * 0.02562 * 24 23 22 26 26 C 1.33199 * 119.59786 * 359.97438 * 25 24 23 27 27 C 1.47320 * 88.24724 * 334.23795 * 15 14 12 28 28 H 0.96993 * 120.00405 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47344 * 59.99677 * 9 7 2 30 30 H 1.09001 * 109.47427 * 299.99721 * 9 7 2 31 31 H 1.08997 * 113.83484 * 109.07990 * 11 10 9 32 32 H 1.08997 * 113.94506 * 337.48202 * 11 10 9 33 33 H 1.08998 * 113.83097 * 22.52545 * 13 10 9 34 34 H 1.08998 * 113.83151 * 250.92709 * 13 10 9 35 35 H 1.08993 * 113.53142 * 35.52651 * 14 12 11 36 36 H 1.09006 * 113.58456 * 264.90554 * 14 12 11 37 37 H 1.08006 * 124.97582 * 0.26768 * 19 18 16 38 38 H 0.96998 * 124.98550 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.97553 * 359.93585 * 22 21 20 40 40 H 1.07995 * 119.77737 * 179.97438 * 23 22 21 41 41 H 0.96998 * 119.98017 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.19874 * 180.02562 * 25 24 23 43 43 H 1.09003 * 113.52789 * 140.45193 * 27 15 14 44 44 H 1.09003 * 113.52760 * 271.07572 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4632 -2.6255 0.2387 12 6 5.4972 -3.6678 -0.8763 13 6 4.1842 -3.0779 -1.3848 14 6 6.7087 -3.8496 -1.7801 15 7 6.3282 -5.2676 -1.9016 16 6 6.5094 -6.2432 -2.8136 17 8 7.1941 -6.0362 -3.7984 18 6 5.8817 -7.5545 -2.6193 19 6 5.1849 -7.9657 -1.5233 20 7 4.7483 -9.2460 -1.6999 21 7 5.1574 -9.7234 -2.9488 22 6 4.9799 -10.9495 -3.6168 23 6 5.4907 -11.1260 -4.8231 24 7 6.2139 -10.0936 -5.4496 25 6 6.3984 -8.8613 -4.7909 26 6 5.8844 -8.6816 -3.5753 27 6 5.6576 -5.1527 -0.5949 28 1 -0.4850 0.8399 -0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 5.7367 -3.0188 1.2178 32 1 5.9817 -1.6991 -0.0084 33 1 4.3134 -2.2877 -2.1243 34 1 3.4510 -3.8272 -1.6833 35 1 7.6594 -3.6963 -1.2696 36 1 6.6396 -3.2987 -2.7182 37 1 5.0007 -7.3643 -0.6453 38 1 4.2307 -9.7512 -1.0536 39 1 4.4265 -11.7468 -3.1431 40 1 5.3522 -12.0687 -5.3315 41 1 6.5861 -10.2307 -6.3348 42 1 6.9525 -8.0672 -5.2693 43 1 4.7103 -5.6894 -0.5434 44 1 6.3118 -5.3673 0.2502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = 196.367258 kcal Electronic energy + Delta-G solvation = -27328.556121 eV Core-core repulsion = 23480.677792 eV Total energy + Delta-G solvation = -3847.878330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.25448 -40.69855 -38.44401 -37.35418 -36.40205 -32.89096 -32.71365 -31.51236 -30.64846 -29.55556 -27.63047 -26.26027 -25.84091 -25.54227 -24.21641 -23.01278 -22.50219 -20.53294 -19.65048 -18.48675 -18.25622 -17.68335 -17.08556 -16.83189 -16.38357 -15.94731 -15.84952 -15.40872 -15.08763 -14.90285 -14.70007 -14.43428 -14.08881 -13.70833 -13.31838 -13.09281 -12.94452 -12.69439 -12.58549 -12.51142 -12.24799 -12.14293 -11.96715 -11.65049 -11.21026 -10.77309 -10.54043 -10.42976 -10.37781 -10.14715 -9.86952 -9.85986 -9.59989 -9.36283 -8.68367 -8.60080 -8.37998 -7.95289 -6.07209 -5.75602 -4.04787 1.13747 1.63068 2.00369 2.80576 2.98118 3.25874 3.34008 3.34206 3.42811 3.65093 3.86423 4.17029 4.39392 4.45797 4.52366 4.74510 4.76814 4.84059 5.02778 5.13478 5.23789 5.25394 5.30265 5.37875 5.44274 5.64187 5.71900 5.76555 5.81399 5.85320 5.99388 6.07198 6.17161 6.18851 6.20550 6.30919 6.44983 6.70642 6.79093 7.01246 7.29769 7.51182 7.67201 7.78319 7.79781 7.84443 8.02687 8.39113 8.60177 9.02883 9.54083 11.06174 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002433 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.462312 B =11506.787679 C =11980.287220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.462 5.462 11 C 0.017 3.983 12 C -0.130 4.130 13 C 0.047 3.953 14 C 0.120 3.880 15 N -0.645 5.645 16 C 0.626 3.374 17 O -0.552 6.552 18 C -0.267 4.267 19 C 0.186 3.814 20 N -0.489 5.489 21 N -0.424 5.424 22 C 0.020 3.980 23 C 0.059 3.941 24 N -0.708 5.708 25 C 0.003 3.997 26 C 0.130 3.870 27 C 0.123 3.877 28 H 0.264 0.736 29 H 0.028 0.972 30 H -0.005 1.005 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.193 0.807 38 H 0.435 0.565 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.083 0.917 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -21.224 -3.661 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.001 3.999 10 N -0.184 5.184 11 C -0.113 4.113 12 C -0.132 4.132 13 C -0.082 4.082 14 C -0.003 4.003 15 N -0.380 5.380 16 C 0.419 3.581 17 O -0.431 6.431 18 C -0.283 4.283 19 C 0.050 3.950 20 N -0.200 5.200 21 N -0.227 5.227 22 C -0.096 4.096 23 C -0.061 4.061 24 N -0.339 5.339 25 C -0.116 4.116 26 C 0.032 3.968 27 C 0.001 3.999 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.013 0.987 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.210 0.790 38 H 0.279 0.721 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.238 0.762 42 H 0.177 0.823 43 H 0.101 0.899 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.266 -21.776 -3.704 25.766 hybrid contribution 0.529 1.145 -0.360 1.312 sum 13.795 -20.632 -4.065 25.149 Atomic orbital electron populations 1.69890 1.06143 1.26843 1.51050 1.24934 0.94755 0.98875 0.94897 0.86866 0.80314 0.84088 0.78503 1.20295 1.21128 1.19215 1.20958 0.88596 0.94720 1.50199 0.90236 1.20709 0.97975 0.85597 0.95571 1.68585 1.10201 1.22942 1.16663 1.23637 0.93164 0.96736 0.97795 1.23110 0.96721 0.95306 0.98038 1.23459 0.92918 0.98894 0.92934 1.22799 0.97504 0.80374 0.99625 1.49379 1.56595 1.11840 1.20221 1.16377 0.79266 0.81105 0.81363 1.90761 1.40956 1.81503 1.29899 1.19182 1.16645 0.95457 0.97025 1.22878 0.90377 0.83347 0.98401 1.43298 1.55080 1.12180 1.09452 1.43837 1.58870 1.12690 1.07349 1.20345 1.09069 0.86468 0.93671 1.21081 0.98246 0.93831 0.92976 1.41898 1.60693 1.11255 1.20034 1.20260 1.08490 0.89970 0.92869 1.18060 0.99423 0.86757 0.92552 1.22690 0.97104 0.94485 0.85660 0.92653 0.95410 0.98729 0.89564 0.91351 0.91010 0.89688 0.89722 0.90276 0.79013 0.72121 0.83546 0.82383 0.76186 0.82302 0.89941 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.51 -14.17 9.91 -34.44 -0.34 -14.52 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.13 2.97 3.62 -4.98 -0.02 2.95 16 10 N -0.46 -8.80 6.14 -246.94 -1.52 -10.31 16 11 C 0.02 0.23 7.78 -3.26 -0.03 0.21 16 12 C -0.13 -1.66 1.46 -156.01 -0.23 -1.89 16 13 C 0.05 0.78 7.77 -3.26 -0.03 0.76 16 14 C 0.12 1.45 8.44 -7.54 -0.06 1.39 16 15 N -0.64 -8.30 3.70 -186.84 -0.69 -8.99 16 16 C 0.63 9.56 8.03 -12.86 -0.10 9.45 16 17 O -0.55 -10.22 16.80 5.17 0.09 -10.14 16 18 C -0.27 -3.62 6.25 -103.31 -0.65 -4.26 16 19 C 0.19 1.82 11.02 -16.23 -0.18 1.64 16 20 N -0.49 -4.46 7.28 30.90 0.23 -4.24 16 21 N -0.42 -5.03 4.21 -8.60 -0.04 -5.07 16 22 C 0.02 0.18 11.29 -15.38 -0.17 0.01 16 23 C 0.06 0.50 11.26 -15.37 -0.17 0.32 16 24 N -0.71 -7.25 5.72 -11.56 -0.07 -7.32 16 25 C 0.00 0.04 11.11 -15.10 -0.17 -0.13 16 26 C 0.13 1.85 6.93 -81.16 -0.56 1.28 16 27 C 0.12 1.27 6.83 -7.66 -0.05 1.22 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 30 H -0.01 -0.11 6.82 -51.93 -0.35 -0.47 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.07 1.24 7.48 -51.93 -0.39 0.86 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.19 1.26 5.09 -52.48 -0.27 0.99 16 38 H 0.44 2.36 8.96 -182.81 -1.64 0.73 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.40 3.06 8.95 -40.82 -0.37 2.69 16 42 H 0.16 2.24 7.31 -52.49 -0.38 1.85 16 43 H 0.08 0.78 6.25 -51.93 -0.32 0.46 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -37.76 362.34 -10.34 -48.10 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.05 Total: 2.42 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.86 Total: 0.27 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -1.31 Total: -62.56 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.76 -10.34 -48.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.469 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds