Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47558 * 2 1 4 4 H 1.08996 * 109.47079 * 302.41742 * 3 2 1 5 5 C 1.50696 * 109.47536 * 182.41260 * 3 2 1 6 6 N 1.34779 * 120.00026 * 66.02037 * 5 3 2 7 7 O 1.21284 * 119.99934 * 246.02425 * 5 3 2 8 8 N 1.46905 * 109.46958 * 62.41386 * 3 2 1 9 9 C 1.46851 * 111.00027 * 181.00454 * 8 3 2 10 10 C 1.53039 * 109.51994 * 174.15730 * 9 8 3 11 11 C 1.53122 * 109.27790 * 59.18165 * 10 9 8 12 12 C 1.53120 * 109.16082 * 302.34151 * 11 10 9 13 13 H 1.09000 * 109.50026 * 297.67918 * 12 11 10 14 14 N 1.46491 * 109.50236 * 177.59595 * 12 11 10 15 15 C 1.34782 * 119.99967 * 85.35597 * 14 12 11 16 16 O 1.21276 * 120.00102 * 359.72432 * 15 14 12 17 17 C 1.50704 * 120.00049 * 179.72098 * 15 14 12 18 18 S 1.81000 * 109.46945 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99656 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00599 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00141 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99810 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47192 * 89.99673 * 23 21 19 25 25 H 1.48501 * 109.46846 * 209.99840 * 23 21 19 26 26 H 1.48498 * 109.46853 * 329.99340 * 23 21 19 27 27 C 1.46848 * 110.99952 * 56.74963 * 8 3 2 28 28 H 1.09003 * 109.46993 * 294.98031 * 1 2 3 29 29 H 1.09000 * 109.46984 * 54.97673 * 1 2 3 30 30 H 1.09001 * 109.47447 * 174.98133 * 1 2 3 31 31 H 1.08997 * 109.47368 * 240.00052 * 2 1 3 32 32 H 1.09002 * 109.47352 * 119.99914 * 2 1 3 33 33 H 0.96999 * 119.99770 * 0.02562 * 6 5 3 34 34 H 0.96993 * 119.99582 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.46056 * 54.14335 * 9 8 3 36 36 H 1.08996 * 109.45196 * 294.16782 * 9 8 3 37 37 H 1.08993 * 109.50818 * 299.23869 * 10 9 8 38 38 H 1.09004 * 109.53398 * 179.13874 * 10 9 8 39 39 H 1.08996 * 109.52002 * 182.43905 * 11 10 9 40 40 H 1.09000 * 109.52327 * 62.24909 * 11 10 9 41 41 H 0.96996 * 120.00466 * 265.07500 * 14 12 11 42 42 H 1.08999 * 109.46805 * 299.99927 * 17 15 14 43 43 H 1.08997 * 109.46844 * 60.00206 * 17 15 14 44 44 H 0.96994 * 119.99810 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.42605 * 65.80403 * 27 8 3 46 46 H 1.09005 * 109.49426 * 305.84290 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9686 -0.8675 5 6 3.5458 1.4429 -0.0598 6 7 4.1767 0.9837 -1.1587 7 8 4.1899 1.8563 0.8810 8 7 1.5986 2.1179 1.2276 9 6 2.0507 3.5149 1.2513 10 6 1.4528 4.2253 2.4678 11 6 1.8969 3.5038 3.7433 12 6 1.4559 2.0393 3.6718 13 1 0.3681 1.9887 3.6240 14 7 1.9269 1.3280 4.8627 15 6 1.1956 1.3508 5.9945 16 8 0.1500 1.9644 6.0287 17 6 1.6770 0.6138 7.2178 18 16 0.4861 0.8347 8.5628 19 6 1.2768 -0.1022 9.8283 20 1 2.2182 -0.5926 9.6291 21 6 0.6903 -0.2092 11.0818 22 7 1.2812 -0.9087 12.0274 23 14 -0.9377 0.6395 11.4268 24 1 -2.0554 -0.2818 11.0991 25 1 -1.0074 1.0114 12.8627 26 1 -1.0442 1.8635 10.5927 27 6 2.0528 1.3916 2.4203 28 1 -0.3633 0.4340 0.9316 29 1 -0.3633 0.5898 -0.8416 30 1 -0.3634 -1.0237 -0.0899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.6615 0.6533 -1.9113 34 1 5.1459 0.9836 -1.1970 35 1 1.7248 4.0175 0.3407 36 1 3.1386 3.5433 1.3124 37 1 0.3651 4.2091 2.4005 38 1 1.8005 5.2581 2.4941 39 1 1.4384 3.9804 4.6097 40 1 2.9822 3.5536 3.8309 41 1 2.7631 0.8372 4.8354 42 1 1.7736 -0.4473 6.9880 43 1 2.6459 1.0094 7.5223 44 1 0.8711 -0.9838 12.9032 45 1 3.1408 1.4296 2.4754 46 1 1.7285 0.3527 2.3591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481531913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -106.238932 kcal Electronic energy + Delta-G solvation = -26543.042877 eV Core-core repulsion = 22785.193759 eV Total energy + Delta-G solvation = -3757.849118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79252 -40.69216 -38.82099 -36.39161 -35.21424 -34.67697 -34.35421 -32.32509 -31.71326 -29.68554 -28.07386 -27.84340 -24.84274 -24.09968 -22.80698 -21.81201 -21.24305 -20.72517 -19.86507 -18.49371 -18.13926 -17.72762 -17.42129 -17.09925 -16.59489 -16.43107 -16.06611 -15.87759 -15.74460 -15.39847 -14.99527 -14.89195 -14.74641 -14.60458 -14.35534 -14.06421 -13.61510 -13.41988 -13.34297 -13.09740 -13.01532 -12.79449 -12.64761 -12.35666 -12.12781 -11.92155 -11.85603 -11.78633 -11.63628 -11.40367 -11.31824 -11.17399 -10.96022 -10.55817 -10.54461 -10.11591 -9.14957 -9.00056 -8.52016 -6.22808 0.97647 1.31202 1.46340 1.54705 1.55834 1.57499 2.13600 2.25236 2.61363 2.69032 2.86059 2.93221 3.68617 3.74382 3.87581 3.92778 4.00434 4.07088 4.12286 4.21438 4.25078 4.42678 4.45897 4.46945 4.55174 4.62256 4.71699 4.83703 4.90432 4.93486 4.99124 5.07019 5.16437 5.21551 5.29119 5.33848 5.45062 5.58228 5.70343 5.89440 5.96510 6.01177 6.10847 6.44881 6.47876 6.93002 7.18247 7.34439 8.60527 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.002447 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.565192 B =11439.672218 C =11589.120223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.068 3.932 4 H 0.136 0.864 5 C 0.484 3.516 6 N -0.836 5.836 7 O -0.580 6.580 8 N -0.504 5.504 9 C 0.045 3.955 10 C -0.106 4.106 11 C -0.127 4.127 12 C 0.156 3.844 13 H 0.072 0.928 14 N -0.710 5.710 15 C 0.538 3.462 16 O -0.558 6.558 17 C -0.111 4.111 18 S -0.172 6.172 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.237 1.237 27 C 0.042 3.958 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.417 0.583 34 H 0.403 0.597 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.412 0.588 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.277 0.723 45 H 0.065 0.935 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 4.362 -35.280 35.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.045 4.045 4 H 0.154 0.846 5 C 0.269 3.731 6 N -0.400 5.400 7 O -0.461 6.461 8 N -0.227 5.227 9 C -0.083 4.083 10 C -0.144 4.144 11 C -0.166 4.166 12 C 0.051 3.949 13 H 0.090 0.910 14 N -0.363 5.363 15 C 0.324 3.676 16 O -0.436 6.436 17 C -0.262 4.262 18 S 0.055 5.945 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.086 4.086 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.249 0.751 34 H 0.234 0.766 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.248 0.752 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.077 5.603 -34.384 34.899 hybrid contribution 2.348 -1.060 0.604 2.646 sum 4.425 4.543 -33.780 34.370 Atomic orbital electron populations 1.21614 0.94063 1.01660 1.02474 1.21625 0.97670 0.92253 1.03380 1.22161 0.88098 0.98680 0.95515 0.84632 1.22365 0.92608 0.75872 0.82294 1.43930 1.11763 1.65420 1.18855 1.90688 1.69160 1.48546 1.37677 1.62237 1.57663 1.02248 1.00597 1.22303 0.98918 0.87944 0.99098 1.21468 1.01309 0.98963 0.92657 1.21911 1.00725 0.95301 0.98697 1.20842 0.99285 0.91253 0.83521 0.90963 1.45768 1.25755 1.54030 1.10737 1.19925 0.83624 0.79913 0.84147 1.90680 1.24714 1.44229 1.83973 1.23270 1.03320 1.04667 0.94974 1.84681 1.33366 1.69146 1.07332 1.22466 1.10456 1.36077 0.98701 0.92057 1.25581 1.00953 0.94807 0.94716 1.70017 1.40806 1.40266 1.04443 0.85855 0.79747 0.81236 0.79459 1.18565 1.18267 1.16112 1.22422 0.99758 0.97906 0.88535 0.93585 0.91370 0.92462 0.88375 0.92479 0.75099 0.76596 0.89097 0.93437 0.91355 0.90122 0.93634 0.92120 0.75159 0.86833 0.87102 0.91340 0.91688 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.71 71.98 0.70 -0.72 16 2 C -0.11 -0.93 5.02 30.59 0.15 -0.78 16 3 C 0.07 0.69 2.24 44.17 0.10 0.79 16 4 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 5 C 0.48 6.17 6.76 87.66 0.59 6.76 16 6 N -0.84 -3.95 8.84 -173.53 -1.53 -5.49 16 7 O -0.58 -12.75 12.49 -3.04 -0.04 -12.78 16 8 N -0.50 -8.20 4.11 -875.51 -3.60 -11.80 16 9 C 0.04 0.76 5.02 86.33 0.43 1.19 16 10 C -0.11 -2.07 6.09 30.65 0.19 -1.88 16 11 C -0.13 -3.20 5.58 30.68 0.17 -3.03 16 12 C 0.16 3.98 2.62 45.04 0.12 4.09 16 13 H 0.07 2.19 7.57 -2.39 -0.02 2.18 16 14 N -0.71 -19.42 5.08 -442.30 -2.25 -21.67 16 15 C 0.54 19.77 7.82 87.66 0.69 20.45 16 16 O -0.56 -24.91 15.52 -3.02 -0.05 -24.96 16 17 C -0.11 -4.40 6.16 71.24 0.44 -3.97 16 18 S -0.17 -8.92 18.55 -56.49 -1.05 -9.97 16 19 C -0.53 -31.49 10.04 67.96 0.68 -30.80 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.04 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -56.71 13.97 21.65 0.30 -56.41 16 23 Si 0.92 45.81 27.74 68.60 1.90 47.71 16 24 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 27 C 0.04 0.85 4.22 86.32 0.36 1.21 16 28 H 0.04 0.71 7.83 -2.39 -0.02 0.69 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.27 7.95 -2.39 -0.02 0.25 16 32 H 0.06 0.68 6.09 -2.39 -0.01 0.67 16 33 H 0.42 -0.82 8.65 -92.71 -0.80 -1.62 16 34 H 0.40 1.79 8.93 -92.71 -0.83 0.96 16 35 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 36 H 0.05 0.99 5.80 -2.39 -0.01 0.98 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.41 9.02 8.60 -92.71 -0.80 8.23 16 42 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 43 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 44 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.07 1.50 5.56 -2.39 -0.01 1.48 16 46 H 0.08 1.61 5.87 -2.38 -0.01 1.60 16 Total: -1.00 -79.97 374.62 -2.66 -82.62 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -1.44 Total: 16.27 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.09 Total: -3.53 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -7.07 Total: -95.36 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.08 Total: -37.74 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -79.97 -2.66 -82.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481531913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.614 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds