Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 H 1.09006 * 109.47063 * 177.48225 * 3 2 1 5 5 C 1.50698 * 109.47477 * 297.48469 * 3 2 1 6 6 O 1.21275 * 119.99930 * 99.99775 * 5 3 2 7 7 N 1.34777 * 119.99903 * 280.00472 * 5 3 2 8 8 C 1.47578 * 134.49144 * 180.02562 * 7 5 3 9 9 C 1.53951 * 86.11888 * 155.35397 * 8 7 5 10 10 N 1.46497 * 113.74156 * 137.95035 * 9 8 7 11 11 C 1.34778 * 119.99757 * 155.00580 * 10 9 8 12 12 O 1.21277 * 120.00225 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99899 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47261 * 179.97438 * 13 11 10 15 15 C 1.76202 * 100.00229 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99843 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00132 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00244 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47100 * 59.99538 * 19 17 15 21 21 H 1.48499 * 109.47262 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47127 * 300.00040 * 19 17 15 23 23 C 1.47588 * 134.49148 * 359.97438 * 7 5 3 24 24 N 1.46901 * 109.46944 * 57.48880 * 3 2 1 25 25 C 1.46895 * 111.00492 * 52.13617 * 24 3 2 26 26 C 1.46901 * 110.99798 * 176.09250 * 24 3 2 27 27 H 1.09000 * 109.47137 * 65.66712 * 1 2 3 28 28 H 1.09000 * 109.47286 * 185.66366 * 1 2 3 29 29 H 1.09004 * 109.47240 * 305.66454 * 1 2 3 30 30 H 1.08997 * 109.47128 * 239.99500 * 2 1 3 31 31 H 1.09007 * 109.47079 * 120.00083 * 2 1 3 32 32 H 1.08995 * 113.77340 * 41.05110 * 8 7 5 33 33 H 1.09005 * 113.76708 * 269.65367 * 8 7 5 34 34 H 1.08994 * 113.74221 * 269.15549 * 9 8 7 35 35 H 0.97001 * 120.00268 * 334.99294 * 10 9 8 36 36 H 1.09009 * 109.46916 * 299.99314 * 13 11 10 37 37 H 1.08998 * 109.47459 * 59.98874 * 13 11 10 38 38 H 0.96997 * 119.99865 * 180.02562 * 18 17 15 39 39 H 1.08992 * 113.76574 * 90.34473 * 23 7 5 40 40 H 1.08996 * 113.76703 * 318.94177 * 23 7 5 41 41 H 1.09002 * 109.46931 * 54.13067 * 25 24 3 42 42 H 1.08998 * 109.47285 * 174.12894 * 25 24 3 43 43 H 1.09004 * 109.47092 * 294.13223 * 25 24 3 44 44 H 1.09002 * 109.47532 * 56.04150 * 26 24 3 45 45 H 1.09004 * 109.47083 * 176.03891 * 26 24 3 46 46 H 1.09002 * 109.47044 * 296.04180 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0451 5 6 1.5892 2.1347 -1.2604 6 8 0.6265 2.8718 -1.2363 7 7 2.2559 1.9345 -2.4145 8 6 2.1036 2.4299 -3.7962 9 6 3.6070 2.1391 -3.9550 10 7 3.9556 1.5172 -5.2348 11 6 5.1992 1.6568 -5.7353 12 8 6.0295 2.2976 -5.1264 13 6 5.5576 1.0176 -7.0521 14 16 7.2846 1.3843 -7.4505 15 6 7.4292 0.5407 -8.9907 16 1 6.5806 0.0111 -9.3980 17 6 8.6332 0.5576 -9.6810 18 7 9.6673 1.2035 -9.1847 19 14 8.7863 -0.3361 -11.3141 20 1 7.8106 0.2286 -12.2807 21 1 10.1628 -0.1659 -11.8444 22 1 8.5067 -1.7811 -11.1158 23 6 3.4322 1.1325 -2.8037 24 7 1.5013 2.1522 1.1680 25 6 1.7624 1.4044 2.4051 26 6 2.0437 3.5148 1.2521 27 1 -0.3633 0.4234 -0.9364 28 1 -0.3634 -1.0226 0.1014 29 1 -0.3634 0.5992 0.8349 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8520 3.4886 -3.8582 33 1 1.4666 1.8028 -4.4201 34 1 4.2465 2.9858 -3.7059 35 1 3.2914 1.0049 -5.7220 36 1 5.4220 -0.0617 -6.9809 37 1 4.9121 1.4139 -7.8360 38 1 10.5086 1.2156 -9.6673 39 1 3.1858 0.1240 -3.1356 40 1 4.2409 1.1558 -2.0734 41 1 2.8286 1.1915 2.4828 42 1 1.4471 1.9989 3.2625 43 1 1.2052 0.4676 2.3878 44 1 1.8367 4.0464 0.3233 45 1 1.5760 4.0413 2.0841 46 1 3.1210 3.4678 1.4114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498101986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -23.520421 kcal Electronic energy + Delta-G solvation = -25666.490582 eV Core-core repulsion = 21912.228407 eV Total energy + Delta-G solvation = -3754.262175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99781 -39.58299 -38.32400 -36.95301 -33.85479 -33.33633 -32.47012 -30.25954 -28.91962 -27.81012 -27.22798 -26.49330 -25.52448 -23.58270 -22.70920 -20.97838 -20.64131 -19.02768 -17.90781 -17.46532 -16.99132 -16.76570 -16.35760 -15.82700 -15.64621 -15.04995 -14.84426 -14.58151 -14.48456 -14.30682 -13.81071 -13.52990 -13.32612 -13.25663 -13.09627 -13.07957 -12.69486 -12.56467 -12.50553 -12.39314 -12.07626 -11.89107 -11.75161 -11.51406 -11.41498 -11.22533 -11.09237 -11.07050 -10.81051 -9.97261 -9.86961 -9.53038 -9.16827 -9.09144 -9.00976 -8.69843 -8.30419 -6.55649 -6.25843 -3.97135 2.27554 2.35125 2.89201 2.98378 3.20614 3.24865 3.27750 3.50130 3.63827 3.93671 4.16186 4.19171 4.44371 4.54524 4.59818 4.77149 4.80961 4.90581 4.97622 5.00984 5.05734 5.09458 5.12543 5.14600 5.17571 5.25142 5.30409 5.38905 5.44700 5.49185 5.52169 5.62183 5.68821 5.76297 5.79636 5.81761 6.06357 6.10670 6.41396 6.50789 6.60944 7.32634 7.52313 7.55489 7.92052 8.30672 8.44285 9.19495 10.81468 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.001931 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.941580 B =14496.491414 C =14619.072698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.072 3.928 4 H 0.062 0.938 5 C 0.547 3.453 6 O -0.517 6.517 7 N -0.645 5.645 8 C 0.101 3.899 9 C 0.119 3.881 10 N -0.729 5.729 11 C 0.536 3.464 12 O -0.513 6.513 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.084 3.916 24 N -0.522 5.522 25 C 0.022 3.978 26 C 0.021 3.979 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 -2.518 19.013 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.040 4.040 4 H 0.079 0.921 5 C 0.336 3.664 6 O -0.391 6.391 7 N -0.383 5.383 8 C -0.022 4.022 9 C 0.012 3.988 10 N -0.383 5.383 11 C 0.322 3.678 12 O -0.386 6.386 13 C -0.305 4.305 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.040 4.040 24 N -0.247 5.247 25 C -0.126 4.126 26 C -0.127 4.127 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.146 0.854 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.225 -0.899 20.169 26.539 hybrid contribution -0.223 -1.718 -1.911 2.579 sum -17.448 -2.617 18.259 25.390 Atomic orbital electron populations 1.21711 0.94146 1.01203 1.03379 1.21564 0.98035 0.92643 1.02900 1.21600 0.97846 0.94949 0.89585 0.92069 1.20014 0.81984 0.81391 0.83043 1.90713 1.26198 1.37295 1.84893 1.49769 1.32177 1.48452 1.07922 1.23517 0.95769 1.01678 0.81245 1.22897 0.95516 0.96880 0.83530 1.45927 1.13838 1.56120 1.22416 1.20403 0.81105 0.79638 0.86642 1.90714 1.48153 1.39340 1.60402 1.23543 1.07614 1.03384 0.95968 1.85410 1.00986 1.70043 1.26855 1.22818 1.00503 1.38400 1.06781 0.90925 1.24996 0.94760 0.95393 0.98428 1.70003 1.02000 1.39720 1.38525 0.86218 0.77466 0.79794 0.81993 1.19923 1.20808 1.19924 1.23843 0.87041 0.96695 0.96445 1.61697 1.58897 1.02588 1.01507 1.22488 0.99344 0.99347 0.91442 1.22476 0.96886 0.89641 1.03706 0.92860 0.93022 0.90849 0.91151 0.90561 0.89164 0.89284 0.85398 0.76312 0.89038 0.89015 0.92086 0.89031 0.89406 0.95417 0.90982 0.90703 0.90651 0.90907 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.25 37.16 0.34 -0.88 16 2 C -0.11 -0.83 5.12 -26.73 -0.14 -0.97 16 3 C 0.07 0.65 1.92 -68.87 -0.13 0.51 16 4 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 5 C 0.55 6.18 5.45 -10.99 -0.06 6.12 16 6 O -0.52 -7.61 15.97 5.56 0.09 -7.52 16 7 N -0.65 -6.21 3.61 -178.54 -0.64 -6.85 16 8 C 0.10 0.87 8.59 -2.97 -0.03 0.85 16 9 C 0.12 1.16 4.43 -70.15 -0.31 0.85 16 10 N -0.73 -7.92 5.36 -55.35 -0.30 -8.22 16 11 C 0.54 8.84 7.85 -10.99 -0.09 8.75 16 12 O -0.51 -10.59 15.46 5.56 0.09 -10.50 16 13 C -0.15 -2.85 6.16 36.00 0.22 -2.63 16 14 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 15 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 16 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 19 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 C 0.08 0.69 8.39 -2.98 -0.03 0.67 16 24 N -0.52 -4.79 3.68 -244.58 -0.90 -5.69 16 25 C 0.02 0.14 8.60 60.06 0.52 0.66 16 26 C 0.02 0.19 9.26 60.07 0.56 0.74 16 27 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 6.73 -51.93 -0.35 0.32 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.45 6.61 -51.93 -0.34 0.11 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.13 1.51 7.46 -51.93 -0.39 1.12 16 35 H 0.40 3.15 8.73 -40.82 -0.36 2.80 16 36 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.17 8.12 -51.93 -0.42 -0.26 16 42 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 43 H 0.07 0.43 6.00 -51.93 -0.31 0.12 16 44 H 0.07 0.83 6.35 -51.93 -0.33 0.51 16 45 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -35.35 389.82 -8.73 -44.08 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.49 Total: -0.54 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 1.06 Total: 2.12 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -1.11 Total: -45.63 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.17 Total: -18.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.35 -8.73 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498101986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.560 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds