Wall clock time and date at job start Tue Mar 31 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47555 * 2 1 4 4 H 1.09006 * 109.47362 * 305.00349 * 3 2 1 5 5 S 1.81408 * 109.46980 * 65.00106 * 3 2 1 6 6 C 1.81393 * 103.00086 * 186.82691 * 5 3 2 7 7 C 1.50702 * 109.47612 * 185.00081 * 3 2 1 8 8 O 1.21281 * 120.00156 * 265.24376 * 7 3 2 9 9 N 1.34779 * 120.00002 * 85.23554 * 7 3 2 10 10 C 1.46500 * 119.99907 * 354.94890 * 9 7 3 11 11 C 1.46497 * 120.00150 * 174.94554 * 9 7 3 12 12 C 1.53503 * 114.17338 * 120.00000 * 11 9 7 13 13 N 1.47480 * 87.93166 * 87.62456 * 12 11 9 14 14 C 1.46897 * 111.00164 * 138.70579 * 13 12 11 15 15 C 1.50703 * 109.47409 * 169.99872 * 14 13 12 16 16 O 1.21294 * 119.99441 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00168 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99763 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00354 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99545 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00528 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99750 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46891 * 60.00143 * 22 20 18 24 24 H 1.48502 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47142 * 300.00237 * 22 20 18 26 26 C 1.47478 * 87.83481 * 27.01090 * 13 12 11 27 27 H 1.09002 * 109.46962 * 59.99287 * 1 2 3 28 28 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46568 * 300.00264 * 1 2 3 30 30 H 1.09006 * 109.47129 * 240.00124 * 2 1 3 31 31 H 1.09002 * 109.46962 * 120.00713 * 2 1 3 32 32 H 1.09000 * 109.47384 * 184.95039 * 6 5 3 33 33 H 1.08999 * 109.47429 * 304.95196 * 6 5 3 34 34 H 1.08996 * 109.47328 * 64.94942 * 6 5 3 35 35 H 1.09003 * 109.46895 * 275.18225 * 10 9 7 36 36 H 1.09001 * 109.46850 * 35.17996 * 10 9 7 37 37 H 1.08993 * 109.46898 * 155.18325 * 10 9 7 38 38 H 1.09006 * 113.37922 * 346.92160 * 11 9 7 39 39 H 1.09003 * 113.47988 * 332.85632 * 12 11 9 40 40 H 1.08998 * 113.48321 * 202.39188 * 12 11 9 41 41 H 1.08998 * 109.47194 * 49.99897 * 14 13 12 42 42 H 1.08998 * 109.47066 * 290.00067 * 14 13 12 43 43 H 0.96998 * 119.99979 * 0.02562 * 17 15 14 44 44 H 0.96996 * 120.00441 * 179.97438 * 21 20 18 45 45 H 1.09001 * 113.47433 * 87.75944 * 26 13 12 46 46 H 1.08998 * 113.47550 * 218.22503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 16 1.5602 2.2534 1.5501 6 6 2.0575 3.9768 1.2799 7 6 3.5420 1.4442 -0.1238 8 8 4.2325 1.5016 0.8716 9 7 4.1179 1.3819 -1.3408 10 6 3.2889 1.2010 -2.5351 11 6 5.5728 1.4952 -1.4694 12 6 6.2445 0.2718 -2.1086 13 7 6.0019 0.8928 -3.4241 14 6 7.1628 0.7239 -4.3081 15 6 6.7947 1.1464 -5.7071 16 8 5.6751 1.5482 -5.9443 17 7 7.7095 1.0779 -6.6944 18 6 7.3747 1.4628 -7.9670 19 1 6.3779 1.8205 -8.1783 20 6 8.3180 1.3926 -8.9848 21 7 9.5311 0.9577 -8.7276 22 14 7.8616 1.9163 -10.7189 23 1 7.4465 3.3421 -10.7122 24 1 9.0355 1.7462 -11.6124 25 1 6.7400 1.0765 -11.2106 26 6 6.0375 2.2037 -2.7494 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.8943 4.5495 2.1928 33 1 3.1135 4.0127 1.0124 34 1 1.4634 4.4040 0.4720 35 1 3.0944 0.1390 -2.6849 36 1 2.3440 1.7286 -2.4047 37 1 3.8115 1.6008 -3.4040 38 1 6.0611 1.8487 -0.5612 39 1 5.6918 -0.6555 -1.9575 40 1 7.3018 0.1780 -1.8611 41 1 7.4667 -0.3229 -4.3129 42 1 7.9867 1.3397 -3.9475 43 1 8.6047 0.7562 -6.5047 44 1 10.1894 0.9083 -9.4382 45 1 7.0396 2.6256 -2.6729 46 1 5.3093 2.9137 -3.1414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499654440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:13 Heat of formation + Delta-G solvation = -19.815973 kcal Electronic energy + Delta-G solvation = -26357.834248 eV Core-core repulsion = 22603.732710 eV Total energy + Delta-G solvation = -3754.101538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99282 -39.28849 -37.76943 -35.31960 -34.53197 -33.88924 -31.31143 -30.28175 -29.29638 -28.05594 -27.13597 -25.99967 -25.35200 -23.62148 -22.42794 -20.89541 -19.33848 -18.72164 -17.99210 -17.62266 -16.75293 -16.24942 -15.92307 -15.77370 -15.45801 -15.11294 -14.92534 -14.64410 -14.26029 -14.00039 -13.76589 -13.72312 -13.32035 -13.25273 -13.06755 -12.92502 -12.56984 -12.43555 -12.26133 -12.07462 -12.00530 -11.62358 -11.54057 -11.43980 -11.29806 -11.09985 -11.00442 -10.78466 -10.47111 -10.24555 -10.23612 -9.91561 -9.52138 -8.87773 -8.74759 -8.25135 -7.99376 -7.83314 -6.44419 -3.85461 1.28432 2.12690 2.41441 2.83817 3.17285 3.23305 3.27285 3.86417 3.93655 4.15448 4.20447 4.33975 4.44642 4.58212 4.77899 4.90039 4.93255 4.94199 4.96033 5.07450 5.15208 5.22435 5.31695 5.35700 5.38098 5.48874 5.50559 5.57571 5.58984 5.64825 5.68329 5.74451 5.75242 5.85411 5.96240 6.07765 6.21954 6.42543 6.45816 7.03819 7.23675 7.51928 7.94407 8.02658 8.58747 9.15225 9.51560 10.03392 10.73320 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002270 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.232244 B =12332.770890 C =12637.300685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.084 4.084 4 H 0.110 0.890 5 S -0.201 6.201 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.522 6.522 9 N -0.582 5.582 10 C 0.072 3.928 11 C 0.115 3.885 12 C -0.016 4.016 13 N -0.437 5.437 14 C 0.007 3.993 15 C 0.447 3.553 16 O -0.578 6.578 17 N -0.566 5.566 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.006 4.006 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 0.562 18.082 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.216 4.216 4 H 0.128 0.872 5 S 0.026 5.974 6 C -0.299 4.299 7 C 0.296 3.704 8 O -0.397 6.397 9 N -0.314 5.314 10 C -0.070 4.070 11 C 0.010 3.990 12 C -0.147 4.147 13 N -0.159 5.159 14 C -0.125 4.125 15 C 0.232 3.768 16 O -0.461 6.461 17 N -0.203 5.203 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.136 4.136 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.224 0.776 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.150 0.214 18.769 22.918 hybrid contribution 1.967 0.752 -1.747 2.736 sum -11.183 0.966 17.022 20.390 Atomic orbital electron populations 1.21836 0.93953 1.02289 1.02917 1.21277 0.97353 0.91241 1.03811 1.23661 0.95326 1.02475 1.00162 0.87217 1.86636 1.79176 1.06940 1.24630 1.23456 1.04790 0.95581 1.06056 1.20521 0.90074 0.76667 0.83114 1.90731 1.63979 1.48910 1.36101 1.47387 1.06113 1.71209 1.06723 1.22054 0.94432 1.01992 0.88560 1.22072 0.80843 0.97258 0.98833 1.24326 1.00310 0.99304 0.90720 1.68849 1.35534 1.05308 1.06247 1.22515 0.92663 1.02286 0.95032 1.19633 0.86401 0.85123 0.85648 1.90501 1.21327 1.51112 1.83188 1.41871 1.12835 1.57639 1.07952 1.19631 0.99248 1.40204 0.83793 0.88021 1.25256 0.94980 0.97398 1.00301 1.69596 1.03670 1.46722 1.34408 0.85927 0.77776 0.79254 0.81314 1.19927 1.20968 1.19888 1.24299 1.01864 0.94916 0.92478 0.92283 0.92048 0.91321 0.89976 0.90429 0.87954 0.90297 0.90534 0.92204 0.92157 0.87403 0.87033 0.89470 0.90386 0.89361 0.92136 0.77552 0.91812 0.90136 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.74 37.16 0.36 -0.71 16 2 C -0.10 -0.84 5.33 -26.74 -0.14 -0.98 16 3 C -0.08 -0.82 1.91 -27.89 -0.05 -0.88 16 4 H 0.11 0.93 6.22 -51.92 -0.32 0.60 16 5 S -0.20 -2.09 19.90 -107.50 -2.14 -4.23 16 6 C -0.13 -1.12 10.61 101.05 1.07 -0.05 16 7 C 0.51 6.26 6.42 -10.98 -0.07 6.19 16 8 O -0.52 -7.98 15.69 5.56 0.09 -7.89 16 9 N -0.58 -6.83 3.11 -173.63 -0.54 -7.37 16 10 C 0.07 0.79 8.92 59.85 0.53 1.33 16 11 C 0.12 1.39 4.64 -67.73 -0.31 1.07 16 12 C -0.02 -0.20 7.31 -7.56 -0.06 -0.25 16 13 N -0.44 -6.58 4.29 -246.14 -1.06 -7.64 16 14 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 15 C 0.45 10.21 7.85 -10.99 -0.09 10.12 16 16 O -0.58 -15.11 16.01 5.55 0.09 -15.02 16 17 N -0.57 -14.06 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 22 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.01 -0.08 6.72 -7.55 -0.05 -0.13 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.52 7.13 -51.93 -0.37 0.15 16 30 H 0.08 0.67 7.23 -51.93 -0.38 0.29 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.08 0.78 7.94 -51.92 -0.41 0.37 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 36 H 0.06 0.53 6.01 -51.93 -0.31 0.22 16 37 H 0.11 1.50 5.50 -51.93 -0.29 1.21 16 38 H 0.11 1.34 7.34 -51.93 -0.38 0.96 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 41 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 43 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 46 H 0.09 1.32 7.34 -51.93 -0.38 0.94 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -32.18 383.49 -8.42 -40.60 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.21 Total: 9.75 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.93 Total: 7.93 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.93 Total: -52.70 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.18 Total: -22.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.14 Total: -4.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.18 -8.42 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499654440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.784 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds