Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30057 * 124.94479 * 2 1 4 4 C 1.35780 * 109.43264 * 179.97438 * 3 2 1 5 5 C 1.39491 * 133.74153 * 179.97438 * 4 3 2 6 6 C 1.39669 * 118.05033 * 180.02562 * 5 4 3 7 7 C 1.47685 * 120.38123 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00217 * 13.32133 * 7 6 5 9 9 N 1.34784 * 119.99992 * 193.31766 * 7 6 5 10 10 C 1.47421 * 125.64703 * 7.84704 * 9 7 6 11 11 C 1.54911 * 104.82909 * 155.88817 * 10 9 7 12 12 C 1.55156 * 101.58511 * 37.01221 * 11 10 9 13 13 C 1.47018 * 125.64639 * 187.86730 * 9 7 6 14 14 H 1.08996 * 110.01474 * 300.53044 * 13 9 7 15 15 C 1.53001 * 109.88541 * 61.62288 * 13 9 7 16 16 N 1.46498 * 109.47176 * 284.03198 * 15 13 9 17 17 C 1.36934 * 119.99761 * 173.42257 * 16 15 13 18 18 H 1.08004 * 120.00345 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00000 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46853 * 269.99890 * 21 19 17 23 23 H 1.48501 * 109.46684 * 29.99973 * 21 19 17 24 24 H 1.48497 * 109.47039 * 149.99807 * 21 19 17 25 25 C 1.39987 * 119.23595 * 0.25639 * 6 5 4 26 26 N 1.31387 * 121.15471 * 359.45882 * 25 6 5 27 27 C 1.32547 * 121.79499 * 0.56624 * 26 25 6 28 28 N 1.36171 * 124.94357 * 179.97438 * 2 1 3 29 29 H 0.97002 * 126.23152 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47089 * 270.01968 * 1 2 3 31 31 H 1.09005 * 109.46694 * 30.01752 * 1 2 3 32 32 H 1.09002 * 109.47672 * 150.01666 * 1 2 3 33 33 H 1.07991 * 120.97474 * 0.07635 * 5 4 3 34 34 H 1.09000 * 110.36626 * 37.04987 * 10 9 7 35 35 H 1.09003 * 110.45965 * 274.77335 * 10 9 7 36 36 H 1.08992 * 111.00926 * 278.93356 * 11 10 9 37 37 H 1.09002 * 110.99947 * 155.08075 * 11 10 9 38 38 H 1.08994 * 110.72179 * 206.13159 * 12 11 10 39 39 H 1.08998 * 110.72112 * 82.85342 * 12 11 10 40 40 H 1.09001 * 109.47235 * 164.02222 * 15 13 9 41 41 H 1.09008 * 109.46815 * 44.03134 * 15 13 9 42 42 H 0.96996 * 119.99989 * 353.41991 * 16 15 13 43 43 H 0.96999 * 120.00491 * 0.02562 * 20 19 17 44 44 H 1.07993 * 119.42069 * 179.72009 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0661 0.0000 4 6 3.5603 0.7029 0.0006 5 6 4.7591 1.4161 0.0004 6 6 5.9537 0.6925 0.0006 7 6 7.2527 1.3953 -0.0001 8 8 7.2999 2.5858 0.2416 9 7 8.3859 0.7167 -0.2688 10 6 8.4610 -0.6798 -0.7351 11 6 9.8231 -0.7809 -1.4659 12 6 10.7191 0.1266 -0.5822 13 6 9.7516 1.2467 -0.1449 14 1 9.8746 2.1158 -0.7911 15 6 10.0290 1.6358 1.3085 16 7 9.3513 2.8982 1.6139 17 6 9.3435 3.3783 2.8963 18 1 9.8367 2.8261 3.6827 19 6 8.7018 4.5747 3.1856 20 7 8.1014 5.2479 2.2272 21 14 8.6918 5.2301 4.9349 22 1 7.5025 4.7057 5.6531 23 1 9.9260 4.7915 5.6348 24 1 8.6391 6.7139 4.9073 25 6 5.9057 -0.7066 -0.0044 26 7 4.7587 -1.3473 0.0013 27 6 3.5996 -0.7044 0.0008 28 7 2.2869 -1.1162 0.0005 29 1 1.9739 -2.0343 0.0013 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 4.7634 2.4960 0.0009 34 1 7.6440 -0.8942 -1.4240 35 1 8.4327 -1.3661 0.1113 36 1 9.7520 -0.3902 -2.4809 37 1 10.1895 -1.8075 -1.4690 38 1 11.5455 0.5358 -1.1632 39 1 11.0895 -0.4227 0.2834 40 1 11.1026 1.7552 1.4542 41 1 9.6572 0.8542 1.9712 42 1 8.9082 3.3940 0.9078 43 1 8.1068 4.9078 1.3188 44 1 6.8276 -1.2690 -0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671309150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = 94.737655 kcal Electronic energy + Delta-G solvation = -28304.851688 eV Core-core repulsion = 24452.566368 eV Total energy + Delta-G solvation = -3852.285320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54650 -40.25333 -38.29799 -37.05194 -34.52473 -33.77110 -32.32474 -31.55322 -31.25504 -30.97183 -28.84316 -27.90533 -25.20509 -24.13378 -23.18631 -22.71546 -21.82809 -21.43295 -20.85289 -19.07982 -18.54441 -18.13323 -16.90043 -16.52922 -16.23652 -16.04448 -15.82616 -15.08581 -14.34522 -14.17372 -13.91160 -13.76214 -13.63132 -13.44910 -13.28108 -13.22828 -13.07400 -12.88810 -12.84972 -12.50079 -12.19155 -11.99047 -11.57830 -11.27415 -11.24734 -11.00317 -10.86147 -10.63679 -10.53792 -10.31091 -9.85192 -9.65730 -9.16469 -8.94215 -8.88734 -8.63366 -8.59561 -8.24143 -6.63589 -5.78261 -2.74923 0.65658 0.80966 2.26134 2.51560 3.09229 3.17894 3.64412 3.71310 3.77473 3.84587 3.89574 4.14263 4.39588 4.51111 4.55469 4.79822 4.81303 4.84206 4.87575 4.93052 4.97851 5.05942 5.24193 5.26713 5.35807 5.43644 5.46809 5.66159 5.69557 5.78987 5.87532 5.92120 5.95149 6.03669 6.07649 6.17950 6.31753 6.41011 6.47591 6.77753 6.85876 6.93130 7.51596 7.65132 7.81325 8.06412 8.60255 9.14153 9.66533 10.49926 10.67249 11.72641 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.004244 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.079879 B = 6596.270248 C = 8931.675589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.473 5.473 4 C -0.003 4.003 5 C 0.047 3.953 6 C -0.183 4.183 7 C 0.574 3.426 8 O -0.474 6.474 9 N -0.613 5.613 10 C 0.087 3.913 11 C -0.132 4.132 12 C -0.124 4.124 13 C 0.130 3.870 14 H 0.075 0.925 15 C 0.151 3.849 16 N -0.736 5.736 17 C -0.334 4.334 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.942 5.942 21 Si 1.078 2.922 22 H -0.299 1.299 23 H -0.298 1.298 24 H -0.289 1.289 25 C 0.146 3.854 26 N -0.488 5.488 27 C 0.251 3.749 28 N -0.587 5.587 29 H 0.426 0.574 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.265 0.735 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -19.886 -10.580 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 N -0.193 5.193 4 C -0.123 4.123 5 C 0.019 3.981 6 C -0.191 4.191 7 C 0.361 3.639 8 O -0.345 6.345 9 N -0.350 5.350 10 C -0.036 4.036 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.027 3.973 14 H 0.093 0.907 15 C 0.022 3.978 16 N -0.387 5.387 17 C -0.465 4.465 18 H 0.073 0.927 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.911 3.089 22 H -0.227 1.227 23 H -0.225 1.225 24 H -0.215 1.215 25 C -0.021 4.021 26 N -0.201 5.201 27 C 0.015 3.985 28 N -0.202 5.202 29 H 0.266 0.734 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.176 0.824 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.223 0.777 43 H 0.077 0.923 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.988 -17.998 -9.281 22.579 hybrid contribution 0.543 -1.780 -0.911 2.072 sum -9.445 -19.778 -10.193 24.172 Atomic orbital electron populations 1.20421 0.83391 1.04976 1.04640 1.23730 0.95826 0.80305 0.97959 1.70471 1.00411 1.27424 1.21031 1.19532 0.92728 0.91549 1.08445 1.20935 0.87341 1.01635 0.88140 1.20678 0.94406 0.94836 1.09170 1.17388 0.81964 0.86548 0.78029 1.90850 1.84998 1.13692 1.45007 1.48248 1.05717 1.12912 1.68080 1.22672 0.98676 0.84286 0.97961 1.22790 0.94367 1.00605 0.99216 1.22643 0.97443 0.96246 0.99907 1.21919 0.80086 0.96345 0.98914 0.90657 1.20949 0.95598 0.90301 0.90960 1.42744 1.65269 1.21957 1.08748 1.19964 1.33427 1.06620 0.86516 0.92709 1.25580 0.98150 0.94578 1.05827 1.70677 1.45310 1.40672 1.02034 0.83278 0.75106 0.76093 0.74466 1.22726 1.22467 1.21546 1.23835 0.95047 0.91196 0.92057 1.66486 0.95713 1.40464 1.17462 1.19111 0.86168 0.91333 1.01869 1.42662 1.03658 1.10455 1.63461 0.73400 0.88967 0.88106 0.89930 0.82435 0.90201 0.90893 0.90529 0.89828 0.89997 0.90206 0.96319 0.96275 0.77662 0.92261 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.29 3.09 8.08 -154.74 -1.25 1.84 16 3 N -0.47 -7.17 11.29 -8.21 -0.09 -7.26 16 4 C 0.00 -0.05 7.23 -84.69 -0.61 -0.66 16 5 C 0.05 0.84 9.75 -38.58 -0.38 0.46 16 6 C -0.18 -3.11 5.83 -104.85 -0.61 -3.73 16 7 C 0.57 11.27 7.45 -12.40 -0.09 11.17 16 8 O -0.47 -11.80 13.06 5.30 0.07 -11.73 16 9 N -0.61 -9.90 3.06 -164.18 -0.50 -10.40 16 10 C 0.09 0.94 4.90 -2.53 -0.01 0.92 16 11 C -0.13 -1.16 7.08 -24.58 -0.17 -1.34 16 12 C -0.12 -1.40 6.44 -24.89 -0.16 -1.57 16 13 C 0.13 2.20 3.02 -66.95 -0.20 1.99 16 14 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 15 C 0.15 3.29 5.61 -4.04 -0.02 3.26 16 16 N -0.74 -20.56 4.48 -59.91 -0.27 -20.83 16 17 C -0.33 -10.36 9.99 -15.06 -0.15 -10.51 16 18 H 0.05 1.67 7.83 -52.48 -0.41 1.26 16 19 C -0.04 -1.35 5.50 -17.43 -0.10 -1.45 16 20 N -0.94 -31.89 13.70 55.49 0.76 -31.13 16 21 Si 1.08 28.31 29.92 -169.99 -5.09 23.22 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 25 C 0.15 2.06 9.39 -17.09 -0.16 1.90 16 26 N -0.49 -6.96 10.36 -11.97 -0.12 -7.08 16 27 C 0.25 3.61 8.45 -155.64 -1.31 2.29 16 28 N -0.59 -6.02 6.20 -9.44 -0.06 -6.08 16 29 H 0.43 2.73 8.96 -40.82 -0.37 2.37 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.16 2.99 7.78 -52.49 -0.41 2.58 16 34 H 0.08 0.75 6.41 -51.93 -0.33 0.42 16 35 H 0.07 0.70 7.04 -51.93 -0.37 0.33 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 40 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.38 11.25 3.85 -40.82 -0.16 11.10 16 43 H 0.27 9.09 6.67 -40.82 -0.27 8.82 16 44 H 0.19 2.10 3.63 -52.49 -0.19 1.91 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -41.64 355.83 -10.31 -51.95 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.51 Total: 9.41 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -4.86 Total: 4.58 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -0.29 Total: -82.79 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 28.31 SS G_CDS: -5.09 Total: 23.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -41.64 -10.31 -51.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671309150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.685 kcal (2) G-P(sol) polarization free energy of solvation -41.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds