Wall clock time and date at job start Tue Mar 31 2020 04:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86810 * 120.00014 * 2 1 4 4 H 1.48496 * 109.46783 * 85.36598 * 3 2 1 5 5 H 1.48505 * 109.47035 * 205.36355 * 3 2 1 6 6 H 1.48494 * 109.46819 * 325.36159 * 3 2 1 7 7 C 1.38812 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00305 * 197.95113 * 7 2 1 9 9 N 1.36933 * 120.00097 * 17.94596 * 7 2 1 10 10 C 1.46930 * 120.62828 * 27.30969 * 9 7 2 11 11 C 1.53625 * 108.54107 * 126.36851 * 10 9 7 12 12 C 1.53042 * 109.24052 * 54.85799 * 11 10 9 13 13 F 1.39903 * 109.45910 * 178.48564 * 12 11 10 14 14 F 1.39897 * 109.44679 * 58.52576 * 12 11 10 15 15 C 1.53035 * 109.53871 * 298.51060 * 12 11 10 16 16 H 1.09005 * 109.49663 * 301.41013 * 15 12 11 17 17 C 1.53003 * 109.49875 * 181.31925 * 15 12 11 18 18 N 1.46494 * 109.47434 * 175.16270 * 17 15 12 19 19 C 1.34771 * 120.00350 * 180.02562 * 18 17 15 20 20 O 1.21280 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00227 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47382 * 179.97438 * 21 19 18 23 23 N 1.33246 * 125.52689 * 89.99635 * 22 21 19 24 24 C 1.30826 * 109.83230 * 180.02562 * 23 22 21 25 25 N 1.34426 * 108.07548 * 0.02562 * 24 23 22 26 26 H 0.97005 * 126.82493 * 179.97438 * 25 24 23 27 27 N 1.30711 * 125.52981 * 269.69722 * 22 21 19 28 28 C 1.46927 * 120.63454 * 207.59399 * 9 7 2 29 29 H 0.97001 * 120.00351 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58727 * 246.20312 * 10 9 7 31 31 H 1.09005 * 109.58710 * 6.62885 * 10 9 7 32 32 H 1.08997 * 109.63591 * 294.86198 * 11 10 9 33 33 H 1.09001 * 109.43220 * 174.72512 * 11 10 9 34 34 H 1.09004 * 109.46939 * 295.16237 * 17 15 12 35 35 H 1.08997 * 109.46959 * 55.15332 * 17 15 12 36 36 H 0.97005 * 119.99853 * 359.97438 * 18 17 15 37 37 H 1.09004 * 109.47161 * 299.99672 * 21 19 18 38 38 H 1.09005 * 109.47677 * 59.99752 * 21 19 18 39 39 H 1.08006 * 125.96209 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.58643 * 353.36739 * 28 9 7 41 41 H 1.08997 * 109.58843 * 113.79579 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3996 2.1030 1.3955 5 1 3.5933 1.4139 -0.5998 6 1 1.5000 2.6224 -0.7958 7 6 2.0102 -1.2021 -0.0005 8 1 3.0508 -1.2250 0.2877 9 7 1.3756 -2.3590 -0.3664 10 6 0.2342 -2.3265 -1.2911 11 6 0.5195 -3.2896 -2.4535 12 6 0.8338 -4.6782 -1.8922 13 9 1.0606 -5.5673 -2.9483 14 9 -0.2486 -5.1280 -1.1287 15 6 2.0831 -4.6035 -1.0114 16 1 2.9211 -4.2294 -1.5996 17 6 2.4156 -5.9982 -0.4774 18 7 3.6745 -5.9477 0.2701 19 6 4.1682 -7.0672 0.8350 20 8 3.5701 -8.1165 0.7250 21 6 5.4635 -7.0153 1.6034 22 6 5.7910 -8.3890 2.1295 23 7 6.5076 -9.3125 1.4900 24 6 6.6018 -10.3897 2.2264 25 7 5.9340 -10.1713 3.3724 26 1 5.8296 -10.7907 4.1116 27 7 5.4228 -8.8658 3.2895 28 6 1.8191 -3.6559 0.1629 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6693 -2.6388 -0.7674 31 1 0.1046 -1.3150 -1.6762 32 1 1.3721 -2.9277 -3.0281 33 1 -0.3566 -3.3480 -3.0994 34 1 1.6152 -6.3354 0.1814 35 1 2.5159 -6.6923 -1.3117 36 1 4.1531 -5.1085 0.3578 37 1 6.2637 -6.6780 0.9444 38 1 5.3635 -6.3213 2.4380 39 1 7.1249 -11.2964 1.9600 40 1 2.7356 -3.5219 0.7374 41 1 1.0422 -4.0744 0.8027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671972161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:14 Heat of formation + Delta-G solvation = -30.797232 kcal Electronic energy + Delta-G solvation = -28385.335154 eV Core-core repulsion = 23973.376703 eV Total energy + Delta-G solvation = -4411.958451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.51251 -46.46506 -42.32546 -39.61025 -37.35772 -34.99538 -33.53338 -32.70391 -31.92706 -30.95286 -30.24984 -29.09075 -25.59987 -25.11056 -23.09538 -22.53021 -21.71927 -21.08151 -20.12981 -19.52099 -18.59463 -17.52994 -16.90668 -16.78680 -16.30092 -15.84005 -15.56968 -15.39478 -15.25694 -15.19027 -14.75427 -14.17990 -13.71608 -13.57053 -13.45429 -13.23628 -13.11661 -12.99183 -12.77764 -12.37563 -12.21898 -12.17320 -11.66897 -11.57375 -11.51503 -11.24618 -10.81753 -10.62531 -10.54470 -10.42483 -10.27929 -10.10069 -10.06320 -9.92672 -9.82150 -9.59275 -9.00689 -8.61611 -6.91135 -5.94489 -3.38211 1.37763 2.39434 2.56772 2.65292 3.25542 3.29547 3.37827 3.39010 3.85275 4.22845 4.37051 4.38273 4.61628 4.65415 4.69194 4.85404 4.91311 5.17735 5.21517 5.26254 5.29100 5.42651 5.54935 5.66110 5.92948 5.94862 6.02226 6.13506 6.15862 6.26985 6.33100 6.42020 6.43153 6.69825 6.76918 7.09845 7.44364 7.49562 7.64817 7.83584 8.22283 8.25752 9.02053 9.64998 10.20238 11.14656 Molecular weight = 329.14amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002976 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.007186 B = 9404.913312 C =10800.833548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.213 7.213 14 F -0.199 7.199 15 C -0.155 4.155 16 H 0.103 0.897 17 C 0.127 3.873 18 N -0.721 5.721 19 C 0.522 3.478 20 O -0.534 6.534 21 C -0.051 4.051 22 C 0.251 3.749 23 N -0.535 5.535 24 C 0.261 3.739 25 N -0.484 5.484 26 H 0.441 0.559 27 N -0.303 5.303 28 C 0.153 3.847 29 H 0.257 0.743 30 H 0.033 0.967 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.405 0.595 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.524 -15.357 1.968 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.215 1.215 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.263 3.737 13 F -0.195 7.195 14 F -0.180 7.180 15 C -0.176 4.176 16 H 0.121 0.879 17 C 0.002 3.998 18 N -0.373 5.373 19 C 0.306 3.694 20 O -0.410 6.410 21 C -0.093 4.093 22 C -0.033 4.033 23 N -0.263 5.263 24 C -0.038 4.038 25 N -0.202 5.202 26 H 0.287 0.713 27 N -0.132 5.132 28 C 0.025 3.975 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.241 0.759 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.239 0.761 40 H 0.085 0.915 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.671 -15.494 2.049 18.924 hybrid contribution 0.514 0.357 0.388 0.736 sum 11.186 -15.137 2.437 18.978 Atomic orbital electron populations 1.70023 1.05358 1.25907 1.52926 1.25072 0.95283 0.98644 1.00326 0.86266 0.79238 0.83442 0.77717 1.21341 1.20271 1.21478 1.19151 0.93024 0.84584 1.42283 0.91239 1.44122 1.36092 1.01245 1.49753 1.20939 0.89340 0.98360 0.86972 1.23343 1.03347 0.92839 1.02342 1.21034 0.84758 0.87680 0.80200 1.92958 1.95018 1.72104 1.59378 1.92966 1.57821 1.90760 1.76500 1.22973 0.97210 0.96849 1.00617 0.87896 1.21314 0.85869 0.96384 0.96192 1.45846 1.25138 1.11398 1.54934 1.20117 0.86133 0.83830 0.79308 1.90733 1.60556 1.29940 1.59789 1.19909 0.97387 0.90455 1.01565 1.23299 0.94506 0.96546 0.88899 1.70353 1.22714 1.00866 1.32333 1.26058 0.94735 0.99277 0.83721 1.48081 1.41392 1.12911 1.17862 0.71330 1.78003 1.21667 0.92145 1.21362 1.20917 0.98954 0.86344 0.91254 0.93335 0.94935 0.88101 0.89527 0.90601 0.90710 0.91019 0.75947 0.85795 0.86118 0.76121 0.91510 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 11.20 55.49 0.62 -24.05 16 2 C 0.01 0.16 4.90 -17.43 -0.09 0.07 16 3 Si 0.90 20.32 29.59 -169.99 -5.03 15.29 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.55 9.58 -15.06 -0.14 -6.69 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.50 2.99 -172.05 -0.51 -14.02 16 10 C 0.17 3.79 5.14 -3.48 -0.02 3.78 16 11 C -0.18 -3.25 5.64 -26.38 -0.15 -3.40 16 12 C 0.30 5.31 1.63 -26.69 -0.04 5.27 16 13 F -0.21 -3.72 16.41 2.25 0.04 -3.68 16 14 F -0.20 -3.85 15.72 2.25 0.04 -3.82 16 15 C -0.15 -2.50 2.03 -90.50 -0.18 -2.69 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.13 1.92 4.83 -4.04 -0.02 1.90 16 18 N -0.72 -9.19 5.33 -60.30 -0.32 -9.51 16 19 C 0.52 7.30 7.82 -10.99 -0.09 7.21 16 20 O -0.53 -9.83 16.03 5.56 0.09 -9.74 16 21 C -0.05 -0.54 6.33 -29.04 -0.18 -0.72 16 22 C 0.25 3.23 6.63 -156.85 -1.04 2.19 16 23 N -0.53 -6.55 11.19 -11.98 -0.13 -6.68 16 24 C 0.26 2.11 13.13 -90.66 -1.19 0.92 16 25 N -0.48 -4.08 7.45 29.53 0.22 -3.86 16 26 H 0.44 1.92 8.96 -182.33 -1.63 0.28 16 27 N -0.30 -3.87 12.80 32.42 0.41 -3.46 16 28 C 0.15 2.87 5.39 -3.71 -0.02 2.85 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 31 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 35 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 36 H 0.41 4.16 7.70 -40.82 -0.31 3.85 16 37 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.22 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 41 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -35.30 349.30 -8.83 -44.13 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.35 Total: 3.44 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -3.16 Total: 10.69 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.29 Total: -61.58 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.30 -8.83 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671972161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.333 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds