Wall clock time and date at job start Tue Mar 31 2020 04:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47325 * 300.00251 * 3 2 1 6 6 H 1.48502 * 109.47124 * 60.00200 * 3 2 1 7 7 C 1.38804 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 163.07044 * 7 2 1 9 9 N 1.36937 * 119.99769 * 343.07101 * 7 2 1 10 10 C 1.46929 * 120.63474 * 331.83860 * 9 7 2 11 11 C 1.53188 * 108.77403 * 233.58809 * 10 9 7 12 12 C 1.53043 * 109.31144 * 305.35586 * 11 10 9 13 13 F 1.39895 * 109.46253 * 301.34833 * 12 11 10 14 14 F 1.39899 * 109.44720 * 181.37815 * 12 11 10 15 15 C 1.53043 * 109.53621 * 61.37133 * 12 11 10 16 16 H 1.09007 * 109.49729 * 58.61279 * 15 12 11 17 17 C 1.53000 * 109.49922 * 178.67877 * 15 12 11 18 18 N 1.46500 * 109.47273 * 184.99688 * 17 15 12 19 19 C 1.34771 * 119.99963 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00156 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99805 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.46940 * 179.97438 * 21 19 18 23 23 N 1.33241 * 125.52400 * 90.00418 * 22 21 19 24 24 C 1.30831 * 109.83094 * 179.97438 * 23 22 21 25 25 N 1.34430 * 108.07707 * 0.02562 * 24 23 22 26 26 H 0.97002 * 126.82882 * 179.97438 * 25 24 23 27 27 N 1.30709 * 125.52906 * 269.69292 * 22 21 19 28 28 C 1.46928 * 120.62957 * 151.81312 * 9 7 2 29 29 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58763 * 113.79627 * 10 9 7 31 31 H 1.08997 * 109.57978 * 353.37113 * 10 9 7 32 32 H 1.08998 * 109.49448 * 185.41088 * 11 10 9 33 33 H 1.09000 * 109.52754 * 65.32599 * 11 10 9 34 34 H 1.08990 * 109.47097 * 305.00452 * 17 15 12 35 35 H 1.09004 * 109.46536 * 65.00098 * 17 15 12 36 36 H 0.97003 * 119.99697 * 0.02562 * 18 17 15 37 37 H 1.08990 * 109.47741 * 300.00073 * 21 19 18 38 38 H 1.09004 * 109.47104 * 60.00462 * 21 19 18 39 39 H 1.07998 * 125.96448 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.58756 * 6.62671 * 28 9 7 41 41 H 1.09005 * 109.58803 * 246.20473 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3702 -2.3624 0.3443 10 6 0.2263 -2.3410 1.2662 11 6 0.4979 -3.3210 2.4117 12 6 0.8122 -4.7022 1.8323 13 9 -0.2663 -5.1382 1.0552 14 9 1.0299 -5.6070 2.8770 15 6 2.0675 -4.6181 0.9609 16 1 2.9027 -4.2553 1.5601 17 6 2.3999 -6.0057 0.4088 18 7 3.6658 -5.9485 -0.3263 19 6 4.1601 -7.0610 -0.9046 20 8 3.5572 -8.1096 -0.8160 21 6 5.4627 -7.0022 -1.6602 22 6 5.7899 -8.3690 -2.2042 23 7 5.4188 -8.8375 -3.3950 24 6 5.8688 -10.0559 -3.5524 25 7 6.5486 -10.3960 -2.4437 26 1 6.9951 -11.2398 -2.2713 27 7 6.4886 -9.2849 -1.5867 28 6 1.8138 -3.6526 -0.2011 29 1 -0.4850 0.8400 0.0004 30 1 -0.6769 -2.6411 0.7349 31 1 0.0995 -1.3356 1.6677 32 1 -0.3826 -3.3865 3.0509 33 1 1.3475 -2.9703 2.9976 34 1 2.4900 -6.7128 1.2333 35 1 1.6044 -6.3297 -0.2624 36 1 4.1482 -5.1099 -0.3968 37 1 5.3730 -6.2947 -2.4844 38 1 6.2580 -6.6789 -0.9886 39 1 5.7194 -10.6799 -4.4212 40 1 2.7344 -3.5127 -0.7676 41 1 1.0400 -4.0597 -0.8521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671972162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:18 Heat of formation + Delta-G solvation = -31.041595 kcal Electronic energy + Delta-G solvation = -28385.419707 eV Core-core repulsion = 23973.450660 eV Total energy + Delta-G solvation = -4411.969047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.140 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -48.51461 -46.46688 -42.32446 -39.61086 -37.36308 -34.99726 -33.53439 -32.70286 -31.92790 -30.97131 -30.24752 -29.09258 -25.59653 -25.10991 -23.09512 -22.52824 -21.72054 -21.08118 -20.13020 -19.51585 -18.59741 -17.52902 -16.90708 -16.78664 -16.28783 -15.88594 -15.53925 -15.38033 -15.32369 -15.09467 -14.80552 -14.16875 -13.71776 -13.57422 -13.45069 -13.23803 -13.11635 -12.98662 -12.77918 -12.38074 -12.21046 -12.18297 -11.67176 -11.57687 -11.51398 -11.23726 -10.84548 -10.62032 -10.50946 -10.42295 -10.27101 -10.09924 -10.07415 -9.91000 -9.81947 -9.59002 -9.00712 -8.62002 -6.89668 -5.93917 -3.38894 1.37219 2.39051 2.57355 2.65127 3.25522 3.29553 3.38012 3.39576 3.85904 4.22672 4.37199 4.37963 4.61456 4.66214 4.69050 4.85308 4.91342 5.16353 5.21582 5.27144 5.29969 5.42809 5.54923 5.66066 5.93182 5.94757 6.02277 6.13517 6.16247 6.27115 6.33601 6.42035 6.44028 6.70660 6.76676 7.10403 7.44978 7.49518 7.65511 7.83999 8.22222 8.26698 9.02686 9.65235 10.20728 11.15240 Molecular weight = 329.14amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.002980 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.050330 B = 9394.662304 C =10799.426403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.178 4.178 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.214 7.214 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.127 3.873 18 N -0.721 5.721 19 C 0.522 3.478 20 O -0.534 6.534 21 C -0.051 4.051 22 C 0.252 3.748 23 N -0.533 5.533 24 C 0.262 3.738 25 N -0.485 5.485 26 H 0.441 0.559 27 N -0.305 5.305 28 C 0.153 3.847 29 H 0.256 0.744 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.223 0.777 40 H 0.067 0.933 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.348 -15.288 -2.436 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.218 4.218 12 C 0.263 3.737 13 F -0.180 7.180 14 F -0.195 7.195 15 C -0.177 4.177 16 H 0.121 0.879 17 C 0.002 3.998 18 N -0.373 5.373 19 C 0.306 3.694 20 O -0.410 6.410 21 C -0.093 4.093 22 C -0.032 4.032 23 N -0.261 5.261 24 C -0.037 4.037 25 N -0.203 5.203 26 H 0.286 0.714 27 N -0.135 5.135 28 C 0.025 3.975 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.239 0.761 40 H 0.085 0.915 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.860 -15.580 -1.923 19.088 hybrid contribution 0.706 0.282 -0.047 0.762 sum 11.566 -15.298 -1.970 19.279 Atomic orbital electron populations 1.70026 1.05340 1.25802 1.53051 1.25096 0.95314 0.98645 1.00260 0.86196 0.79343 0.83651 0.77371 1.20128 1.21606 1.21473 1.19192 0.92671 0.84379 1.42743 0.91214 1.44102 1.35755 1.01532 1.49828 1.20840 0.89406 0.98076 0.87295 1.23270 1.03347 0.92982 1.02238 1.21036 0.84895 0.87468 0.80281 1.92967 1.58109 1.91140 1.75796 1.92956 1.95171 1.71187 1.60170 1.22977 0.97110 0.96927 1.00648 0.87945 1.21314 0.85718 0.96409 0.96319 1.45847 1.24593 1.11847 1.55031 1.20115 0.86326 0.83832 0.79111 1.90733 1.60608 1.29831 1.59839 1.19911 0.97022 0.90845 1.01550 1.23298 0.94373 0.96230 0.89263 1.70371 1.26343 1.09822 1.19540 1.26077 0.91702 0.93417 0.92516 1.48076 1.43288 1.15450 1.13492 0.71368 1.77973 1.24826 0.95009 1.15657 1.20923 0.99015 0.86253 0.91261 0.93376 0.94948 0.88160 0.90577 0.89571 0.91085 0.90641 0.75949 0.85620 0.86289 0.76093 0.91487 0.94903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 11.20 55.49 0.62 -24.06 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 20.35 29.59 -169.99 -5.03 15.32 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.53 9.58 -15.06 -0.14 -6.68 16 8 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.50 2.99 -172.32 -0.52 -14.02 16 10 C 0.17 3.79 5.10 -3.71 -0.02 3.77 16 11 C -0.18 -3.25 5.62 -26.61 -0.15 -3.40 16 12 C 0.30 5.31 1.63 -26.69 -0.04 5.27 16 13 F -0.20 -3.85 15.73 2.25 0.04 -3.81 16 14 F -0.21 -3.72 16.41 2.25 0.04 -3.68 16 15 C -0.16 -2.50 2.03 -90.50 -0.18 -2.69 16 16 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.13 1.92 4.83 -4.04 -0.02 1.90 16 18 N -0.72 -9.19 5.33 -60.30 -0.32 -9.51 16 19 C 0.52 7.30 7.82 -10.99 -0.09 7.21 16 20 O -0.53 -9.82 16.03 5.56 0.09 -9.73 16 21 C -0.05 -0.54 6.33 -29.03 -0.18 -0.72 16 22 C 0.25 3.24 6.63 -156.86 -1.04 2.20 16 23 N -0.53 -6.66 11.19 -11.98 -0.13 -6.80 16 24 C 0.26 2.15 13.13 -90.65 -1.19 0.96 16 25 N -0.48 -4.03 7.45 29.53 0.22 -3.81 16 26 H 0.44 1.84 8.96 -182.33 -1.63 0.21 16 27 N -0.31 -3.83 12.80 32.42 0.41 -3.42 16 28 C 0.15 2.88 5.40 -3.71 -0.02 2.86 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 31 H 0.10 2.48 6.06 -51.93 -0.31 2.16 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 35 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 36 H 0.41 4.16 7.71 -40.82 -0.31 3.85 16 37 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.22 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.07 1.15 7.14 -51.93 -0.37 0.78 16 41 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -35.31 349.32 -8.84 -44.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.35 Total: 3.35 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -3.17 Total: 10.76 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.28 Total: -61.61 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.31 -8.84 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671972162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.102 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds