Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36598 * 126.57476 * 2 1 4 4 C 1.47514 * 125.77303 * 0.04654 * 3 2 1 5 5 O 1.21598 * 120.00357 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99897 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46950 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.46698 * 65.00588 * 8 7 6 10 10 N 1.46497 * 109.47187 * 304.99968 * 8 7 6 11 11 C 1.36942 * 119.99715 * 154.99493 * 10 8 7 12 12 H 1.08001 * 119.99838 * 0.02562 * 11 10 8 13 13 C 1.38803 * 119.99940 * 179.97438 * 11 10 8 14 14 N 1.31622 * 120.00374 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00080 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46841 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47011 * 120.00562 * 15 13 11 18 18 H 1.48498 * 109.47022 * 240.00250 * 15 13 11 19 19 C 1.50693 * 109.46883 * 184.99833 * 8 7 6 20 20 C 1.38241 * 120.00021 * 79.73229 * 19 8 7 21 21 C 1.38229 * 120.00200 * 179.78706 * 20 19 8 22 22 C 1.38234 * 120.00007 * 0.43799 * 21 20 19 23 23 C 1.38235 * 119.99989 * 359.81783 * 22 21 20 24 24 C 1.38233 * 120.00411 * 260.00273 * 19 8 7 25 25 N 1.34404 * 108.45483 * 180.02562 * 3 2 1 26 26 N 1.28767 * 109.52070 * 359.75754 * 25 3 2 27 27 N 1.34808 * 126.58255 * 180.02562 * 2 1 3 28 28 C 1.46506 * 126.59290 * 359.91966 * 27 2 1 29 29 H 1.08997 * 109.46707 * 269.97523 * 1 2 3 30 30 H 1.08999 * 109.47251 * 29.97887 * 1 2 3 31 31 H 1.09000 * 109.47086 * 149.97957 * 1 2 3 32 32 H 0.96996 * 119.99991 * 359.97438 * 6 4 3 33 33 H 1.08995 * 109.47258 * 299.99937 * 7 6 4 34 34 H 1.09007 * 109.47132 * 60.00140 * 7 6 4 35 35 H 0.97000 * 120.00060 * 335.00530 * 10 8 7 36 36 H 0.96996 * 120.00174 * 179.97438 * 14 13 11 37 37 H 1.08008 * 119.99755 * 359.97438 * 20 19 8 38 38 H 1.08001 * 120.00277 * 180.27211 * 21 20 19 39 39 H 1.08001 * 120.00360 * 179.83749 * 22 21 20 40 40 H 1.08002 * 120.00345 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.99947 * 359.97438 * 24 19 8 42 42 H 1.08999 * 109.46892 * 90.00733 * 28 27 2 43 43 H 1.09000 * 109.46803 * 209.99906 * 28 27 2 44 44 H 1.09000 * 109.47214 * 330.00699 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0010 5 8 0.6859 2.7628 0.0014 6 7 2.7816 3.4988 0.0014 7 6 2.3374 4.8948 0.0018 8 6 3.5574 5.8182 0.0028 9 1 4.1096 5.6917 -0.9284 10 7 4.4243 5.4808 1.1346 11 6 5.7615 5.7713 1.0831 12 1 6.1769 6.2496 0.2084 13 6 6.5828 5.4521 2.1556 14 7 6.0765 4.8696 3.2218 15 14 8.4069 5.8490 2.0858 16 1 8.7228 6.4984 0.7882 17 1 8.7560 6.7696 3.1975 18 1 9.1917 4.5952 2.2164 19 6 3.1036 7.2499 0.1270 20 6 2.7536 7.7592 1.3636 21 6 2.3415 9.0737 1.4783 22 6 2.2708 9.8763 0.3550 23 6 2.6157 9.3655 -0.8823 24 6 3.0319 8.0522 -0.9963 25 7 3.5984 0.6790 -0.0006 26 7 3.6299 -0.6083 0.0042 27 7 2.3105 -1.0825 -0.0005 28 6 1.8865 -2.4849 0.0005 29 1 -0.3632 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 3.7291 3.2913 0.0014 33 1 1.7377 5.0855 -0.8882 34 1 1.7374 5.0850 0.8918 35 1 4.0511 5.0514 1.9202 36 1 6.6505 4.6462 3.9711 37 1 2.8050 7.1309 2.2407 38 1 2.0723 9.4729 2.4450 39 1 1.9463 10.9026 0.4441 40 1 2.5609 9.9926 -1.7599 41 1 3.3016 7.6532 -1.9630 42 1 1.7803 -2.8330 -1.0269 43 1 2.6338 -3.0900 0.5138 44 1 0.9299 -2.5748 0.5154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691778624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = 97.865322 kcal Electronic energy + Delta-G solvation = -27429.231330 eV Core-core repulsion = 23577.081636 eV Total energy + Delta-G solvation = -3852.149694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20236 -39.26115 -38.60159 -35.86239 -34.98514 -33.48283 -32.33572 -31.91689 -30.37396 -29.51025 -28.67349 -27.56809 -27.01971 -24.04539 -23.20266 -22.46824 -21.87685 -21.01103 -20.15458 -19.85116 -17.91567 -17.22866 -16.44909 -16.34021 -15.95503 -15.55016 -15.15471 -14.67099 -14.50055 -14.23237 -14.12359 -13.94438 -13.63932 -13.44750 -13.21470 -13.12802 -12.89644 -12.78702 -12.76072 -12.65791 -12.26523 -11.92676 -11.88479 -11.09655 -11.05794 -10.90323 -10.76444 -10.67786 -10.41514 -10.23499 -10.04222 -9.81847 -9.71839 -9.13210 -9.00839 -8.58081 -8.36946 -8.14990 -7.05075 -5.78282 -3.09420 1.12329 1.87415 1.89710 1.96376 1.99924 3.44573 3.49737 3.51467 3.52923 3.56981 4.20230 4.24316 4.34813 4.56648 4.58369 4.69782 4.81052 4.96582 5.21594 5.29245 5.32057 5.38152 5.45637 5.53572 5.56230 5.61373 5.64345 5.71733 5.80913 5.92046 5.96909 6.08099 6.13916 6.31779 6.35455 6.46466 6.52895 6.67764 6.83658 6.97311 7.06022 7.33143 7.56723 7.72183 7.83935 8.12513 8.37487 8.53305 9.50834 10.00423 10.36709 11.43294 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.003766 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.442866 B = 7432.200065 C = 9717.954979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.117 3.883 3 C -0.100 4.100 4 C 0.602 3.398 5 O -0.552 6.552 6 N -0.695 5.695 7 C 0.121 3.879 8 C 0.197 3.803 9 H 0.066 0.934 10 N -0.713 5.713 11 C -0.242 4.242 12 H 0.072 0.928 13 C -0.005 4.005 14 N -0.927 5.927 15 Si 0.904 3.096 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.291 1.291 19 C -0.080 4.080 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.120 4.120 25 N -0.190 5.190 26 N -0.070 5.070 27 N -0.370 5.370 28 C 0.089 3.911 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.419 0.581 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.387 0.613 36 H 0.255 0.745 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 -8.271 -7.860 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.021 4.021 3 C -0.239 4.239 4 C 0.386 3.614 5 O -0.430 6.430 6 N -0.346 5.346 7 C -0.003 4.003 8 C 0.086 3.914 9 H 0.084 0.916 10 N -0.354 5.354 11 C -0.373 4.373 12 H 0.090 0.910 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.736 3.264 16 H -0.205 1.205 17 H -0.220 1.220 18 H -0.218 1.218 19 C -0.083 4.083 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.139 4.139 25 N -0.063 5.063 26 N -0.050 5.050 27 N -0.156 5.156 28 C -0.052 4.052 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.257 0.743 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.756 -8.486 -7.885 17.231 hybrid contribution 0.583 0.147 0.462 0.758 sum -12.173 -8.339 -7.423 16.517 Atomic orbital electron populations 1.20685 0.84786 1.05169 1.04541 1.21882 0.96118 0.86418 0.97676 1.21282 0.88963 0.95587 1.18077 1.16683 0.85533 0.82527 0.76632 1.90720 1.15991 1.83756 1.52570 1.45774 1.11116 1.05478 1.72223 1.21640 0.96936 0.79670 1.02053 1.19483 0.89985 0.87985 0.93958 0.91588 1.42446 1.05120 1.71353 1.16440 1.19213 0.83860 1.33209 1.01011 0.91035 1.24705 0.98001 1.01024 0.96385 1.69665 1.34589 1.46685 1.06507 0.86163 0.85604 0.77445 0.77227 1.20528 1.21964 1.21812 1.20986 0.96036 0.98384 0.92941 1.21013 0.96324 0.95018 0.97805 1.21099 1.00931 0.94522 0.98036 1.20973 1.02026 0.99196 0.93125 1.20978 1.01053 0.95678 0.97124 1.21014 1.00685 0.94030 0.98175 1.74718 1.18938 1.03817 1.08836 1.82038 0.95695 1.03681 1.23538 1.50292 1.06662 1.07582 1.51062 1.22108 1.02325 0.76387 1.04423 0.89155 0.86927 0.90961 0.74276 0.91252 0.91328 0.77823 0.93505 0.85893 0.86893 0.87141 0.87035 0.86734 0.89491 0.88129 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.38 36.01 0.34 -0.49 16 2 C 0.12 1.49 7.02 -81.87 -0.57 0.91 16 3 C -0.10 -1.63 6.99 -83.55 -0.58 -2.22 16 4 C 0.60 10.55 7.82 -12.48 -0.10 10.45 16 5 O -0.55 -9.98 14.72 5.28 0.08 -9.91 16 6 N -0.70 -12.44 5.38 -61.35 -0.33 -12.77 16 7 C 0.12 2.09 5.21 -4.04 -0.02 2.07 16 8 C 0.20 3.74 2.64 -69.08 -0.18 3.55 16 9 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 10 N -0.71 -16.64 3.81 -54.55 -0.21 -16.85 16 11 C -0.24 -6.42 9.92 -15.06 -0.15 -6.57 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 14 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 15 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 C -0.08 -1.45 4.92 -104.63 -0.51 -1.97 16 20 C -0.08 -1.55 9.32 -39.58 -0.37 -1.92 16 21 C -0.13 -2.09 10.05 -39.59 -0.40 -2.48 16 22 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 23 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -1.95 9.67 -39.58 -0.38 -2.33 16 25 N -0.19 -3.41 12.04 32.84 0.40 -3.02 16 26 N -0.07 -1.12 13.78 60.35 0.83 -0.28 16 27 N -0.37 -4.35 4.03 -63.58 -0.26 -4.60 16 28 C 0.09 0.51 11.18 59.85 0.67 1.17 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 1.19 6.43 -51.93 -0.33 0.86 16 31 H 0.07 0.40 7.83 -51.93 -0.41 -0.01 16 32 H 0.42 8.10 7.82 -40.82 -0.32 7.78 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 2.44 7.73 -52.48 -0.41 2.04 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.64 8.04 -52.49 -0.42 1.22 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.30 7.77 -51.93 -0.40 -0.11 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -33.31 379.78 -7.17 -40.48 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -5.95 Total: 15.27 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.16 Total: -4.78 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: 1.16 Total: -64.13 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.31 -7.17 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.347 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds