Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 H 1.09007 * 109.46795 * 54.68444 * 3 2 1 5 5 C 1.52998 * 109.47331 * 294.68506 * 3 2 1 6 6 N 1.46500 * 109.46977 * 184.99874 * 5 3 2 7 7 C 1.34773 * 120.00321 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00348 * 179.97438 * 7 6 5 10 10 S 1.81007 * 109.47166 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99953 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99931 * 0.02562 * 11 10 9 13 13 C 1.38792 * 119.99818 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00038 * 179.97438 * 13 11 10 15 15 Si 1.86809 * 120.00287 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47119 * 89.99518 * 15 13 11 17 17 H 1.48490 * 109.47222 * 209.99937 * 15 13 11 18 18 H 1.48502 * 109.46744 * 329.99705 * 15 13 11 19 19 N 1.46900 * 109.46902 * 174.67963 * 3 2 1 20 20 C 1.46900 * 111.00193 * 272.62254 * 19 3 2 21 21 C 1.50697 * 109.47227 * 176.02000 * 20 19 3 22 22 O 1.21279 * 119.99912 * 0.02562 * 21 20 19 23 23 N 1.34780 * 120.00052 * 180.02562 * 21 20 19 24 24 C 1.47060 * 136.05733 * 359.63243 * 23 21 20 25 25 C 1.53238 * 88.08472 * 207.20427 * 24 23 21 26 26 C 1.47066 * 136.05608 * 179.97438 * 23 21 20 27 27 H 1.09001 * 109.47213 * 59.42128 * 1 2 3 28 28 H 1.08997 * 109.46782 * 299.41389 * 1 2 3 29 29 H 1.09000 * 109.46654 * 179.41847 * 1 2 3 30 30 H 1.08994 * 109.47475 * 120.01097 * 2 1 3 31 31 H 1.09002 * 109.46744 * 240.00841 * 2 1 3 32 32 H 1.09004 * 109.47151 * 304.99328 * 5 3 2 33 33 H 1.08993 * 109.47491 * 64.99553 * 5 3 2 34 34 H 0.96998 * 120.00161 * 359.97438 * 6 5 3 35 35 H 1.08993 * 109.47240 * 299.99869 * 9 7 6 36 36 H 1.08998 * 109.46975 * 60.00212 * 9 7 6 37 37 H 0.97003 * 119.99654 * 179.97438 * 14 13 11 38 38 H 1.00905 * 110.99721 * 148.67912 * 19 3 2 39 39 H 1.09003 * 109.47387 * 296.02485 * 20 19 3 40 40 H 1.09002 * 109.46790 * 56.02560 * 20 19 3 41 41 H 1.09001 * 113.46900 * 321.93547 * 24 23 21 42 42 H 1.09004 * 113.47127 * 92.37497 * 24 23 21 43 43 H 1.08997 * 114.32403 * 220.47316 * 25 24 23 44 44 H 1.08999 * 114.02184 * 87.71032 * 25 24 23 45 45 H 1.08992 * 113.47178 * 267.62569 * 26 23 21 46 46 H 1.09003 * 113.46555 * 38.07266 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8386 5 6 1.6421 2.1242 -1.3106 6 7 2.2312 3.4645 -1.3624 7 6 2.0147 4.2549 -2.4323 8 8 1.3317 3.8568 -3.3522 9 6 2.6202 5.6339 -2.4853 10 16 2.1508 6.4398 -4.0366 11 6 2.9695 7.9873 -3.8374 12 1 3.5436 8.1834 -2.9440 13 6 2.8764 8.9542 -4.8288 14 7 3.4876 10.1105 -4.6798 15 14 1.8827 8.6153 -6.3739 16 1 0.4784 9.0500 -6.1645 17 1 2.4685 9.3656 -7.5136 18 1 1.9115 7.1608 -6.6717 19 7 3.5034 1.4444 0.1284 20 6 3.9080 1.4248 1.5405 21 6 5.4091 1.3287 1.6316 22 8 6.0763 1.2818 0.6199 23 7 6.0103 1.2950 2.8374 24 6 5.5720 1.3353 4.2406 25 6 6.9329 1.9444 4.5945 26 6 7.3937 1.2077 3.3289 27 1 -0.3634 0.5228 -0.8848 28 1 -0.3633 0.5047 0.8952 29 1 -0.3632 -1.0276 -0.0104 30 1 1.8934 -0.5140 0.8898 31 1 1.8933 -0.5137 -0.8901 32 1 2.0062 1.5346 -2.1520 33 1 0.5563 2.2022 -1.3646 34 1 2.7771 3.7831 -0.6266 35 1 2.2554 6.2235 -1.6443 36 1 3.7061 5.5562 -2.4308 37 1 3.4228 10.7861 -5.3728 38 1 3.9075 2.2342 -0.3524 39 1 3.5722 2.3403 2.0275 40 1 3.4582 0.5640 2.0353 41 1 4.7363 2.0130 4.4150 42 1 5.4123 0.3480 4.6741 43 1 7.3693 1.5627 5.5175 44 1 6.9664 3.0311 4.5165 45 1 7.7238 0.1862 3.5172 46 1 8.1040 1.7771 2.7294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698589710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -32.114989 kcal Electronic energy + Delta-G solvation = -25330.521584 eV Core-core repulsion = 21575.886721 eV Total energy + Delta-G solvation = -3754.634863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70374 -39.61538 -38.42408 -37.39804 -33.96065 -33.25022 -32.42715 -30.70681 -29.94424 -28.01606 -26.60850 -25.66741 -25.39399 -24.04289 -22.40302 -20.68276 -20.46910 -19.40651 -18.04945 -17.50957 -16.93962 -16.67696 -16.40853 -16.01219 -15.89503 -15.48057 -14.96603 -14.94583 -14.37522 -14.28362 -13.93182 -13.63049 -13.40103 -13.34190 -13.14608 -13.10650 -12.94308 -12.78663 -12.54105 -12.21236 -12.04561 -11.91251 -11.71637 -11.46906 -11.28471 -11.25194 -10.99687 -10.90651 -10.58376 -10.08678 -9.84725 -9.54868 -9.16944 -9.04266 -8.97690 -8.84595 -8.49239 -6.90574 -6.27845 -3.99487 2.23427 2.37518 2.75311 2.96003 3.28614 3.34517 3.52156 3.59432 3.68015 3.81546 4.06719 4.34346 4.36916 4.41796 4.60655 4.66742 4.75616 4.81907 4.83720 4.86423 4.88130 4.89864 5.07345 5.11264 5.12572 5.15352 5.21304 5.26243 5.30332 5.43279 5.52729 5.60542 5.72384 5.75266 5.77953 5.92182 5.99681 6.01646 6.44872 6.51101 6.93021 7.29932 7.50961 7.84441 7.95279 8.42638 8.45682 9.18373 10.81426 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002492 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.180076 B =11232.848248 C =13135.964291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.079 3.921 4 H 0.054 0.946 5 C 0.117 3.883 6 N -0.741 5.741 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.671 5.671 20 C 0.048 3.952 21 C 0.539 3.461 22 O -0.517 6.517 23 N -0.655 5.655 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.103 3.897 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.271 0.729 38 H 0.355 0.645 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -21.599 23.823 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.031 4.031 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.397 5.397 7 C 0.319 3.681 8 O -0.389 6.389 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.307 5.307 20 C -0.084 4.084 21 C 0.328 3.672 22 O -0.391 6.391 23 N -0.394 5.394 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.177 0.823 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.502 -22.774 21.304 31.189 hybrid contribution 0.557 1.603 1.181 2.067 sum 1.059 -21.171 22.485 30.901 Atomic orbital electron populations 1.21861 0.95412 1.02054 1.02214 1.21475 0.95254 0.94852 1.03148 1.21868 0.87060 0.97212 0.96934 0.92766 1.21588 0.99018 0.82764 0.97364 1.46008 1.55136 1.16341 1.22169 1.20255 0.80160 0.86322 0.81371 1.90707 1.37752 1.74415 1.36074 1.23288 1.04186 0.94935 1.05180 1.84786 1.69511 1.16647 1.20426 1.22316 1.36733 0.98246 1.09572 0.89412 1.24716 0.94620 0.93929 0.98073 1.69942 1.41812 1.05285 1.34703 0.86728 0.80828 0.81480 0.82791 1.19217 1.19928 1.15881 1.60108 1.08497 1.51467 1.10606 1.21764 0.92006 1.02787 0.91828 1.20205 0.89916 0.75968 0.81123 1.90769 1.65965 1.48519 1.33809 1.49722 1.10222 1.74386 1.05030 1.22965 0.98540 1.01119 0.79889 1.23358 0.96359 1.01459 0.98251 1.22932 0.85462 1.00685 0.92862 0.92015 0.92808 0.92357 0.91747 0.90708 0.90382 0.90379 0.77273 0.88572 0.88380 0.91945 0.82305 0.92184 0.88010 0.90327 0.89583 0.89036 0.88599 0.89800 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.69 37.16 0.36 -0.72 16 2 C -0.11 -0.83 5.66 -26.73 -0.15 -0.98 16 3 C 0.08 0.67 2.27 -67.71 -0.15 0.52 16 4 H 0.05 0.40 7.81 -51.93 -0.41 -0.01 16 5 C 0.12 1.33 4.93 -4.04 -0.02 1.31 16 6 N -0.74 -9.61 4.97 -60.30 -0.30 -9.91 16 7 C 0.53 9.63 7.85 -10.99 -0.09 9.55 16 8 O -0.52 -11.28 15.86 5.55 0.09 -11.19 16 9 C -0.13 -2.47 6.16 36.01 0.22 -2.25 16 10 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 11 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 12 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 13 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 15 Si 0.86 22.06 27.74 -169.99 -4.72 17.35 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 19 N -0.67 -6.62 5.86 -107.99 -0.63 -7.25 16 20 C 0.05 0.38 5.76 -4.98 -0.03 0.35 16 21 C 0.54 5.76 8.13 -10.99 -0.09 5.67 16 22 O -0.52 -8.02 17.06 5.56 0.09 -7.92 16 23 N -0.66 -5.04 3.69 -185.43 -0.68 -5.73 16 24 C 0.10 0.35 8.40 -8.65 -0.07 0.28 16 25 C -0.16 -0.49 8.48 -26.34 -0.22 -0.71 16 26 C 0.10 0.61 8.61 -8.50 -0.07 0.53 16 27 H 0.06 0.47 6.66 -51.93 -0.35 0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 7.48 -51.93 -0.39 0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.90 6.81 -51.93 -0.35 0.55 16 34 H 0.39 4.12 7.42 -40.82 -0.30 3.81 16 35 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.35 3.99 6.57 -39.29 -0.26 3.74 16 39 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 40 H 0.10 0.63 7.46 -51.93 -0.39 0.24 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -37.74 392.51 -9.07 -46.81 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.51 Total: 2.24 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.10 Total: 1.38 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.84 Total: -48.97 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.74 -9.07 -46.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698589710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.695 kcal (2) G-P(sol) polarization free energy of solvation -37.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds